RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, human

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD4-208	ENST00000540960	KIF20B	Q96Q89	1820 aa		10.85	□□□□□ -0.67
CHD4-208	ENST00000540960		A0A087WZG4	1122 aa		10.84	□□□□□ -0.67
CHD4-208	ENST00000540960	WTIP	A6NIX2	430 aa	Predicted RBP	10.84	□□□□□ -0.67
CHD4-208	ENST00000540960	CAMTA2	O94983	1202 aa		10.84	□□□□□ -0.67
CHD4-208	ENST00000540960	MOB2	Q70IA6	237 aa		10.84	□□□□□ -0.67
CHD4-208	ENST00000540960	NBPF5P	Q86XG9	351 aa	Predicted RBP	10.84	□□□□□ -0.67
CHD4-208	ENST00000540960	ARMC5	Q96C12	935 aa		10.84	□□□□□ -0.67
CHD4-208	ENST00000540960	STXBP5L	Q9Y2K9	1186 aa		10.84	□□□□□ -0.67
CHD4-208	ENST00000540960	TCERG1	O14776	1098 aa	Known RBP	10.83	□□□□□ -0.68
CHD4-208	ENST00000540960	PPIP5K2	O43314	1243 aa		10.83	□□□□□ -0.68
CHD4-208	ENST00000540960	RAD17	O75943	681 aa		10.83	□□□□□ -0.68
CHD4-208	ENST00000540960	ALDH1B1	P30837	517 aa		10.83	□□□□□ -0.68
CHD4-208	ENST00000540960	TM4SF4	P48230	202 aa		10.83	□□□□□ -0.68
CHD4-208	ENST00000540960	CAP1	Q01518	475 aa		10.83	□□□□□ -0.68
CHD4-208	ENST00000540960	EIF4A2	Q14240	407 aa	Known RBP	10.83	□□□□□ -0.68
CHD4-208	ENST00000540960	DEFB123	Q8N688	67 aa		10.83	□□□□□ -0.68
CHD4-208	ENST00000540960	RUNDC1	Q96C34	613 aa		10.83	□□□□□ -0.68
CHD4-208	ENST00000540960	BCL2L13	Q9BXK5	485 aa		10.83	□□□□□ -0.68
CHD4-208	ENST00000540960	LGR6	Q9HBX8	967 aa		10.83	□□□□□ -0.68
CHD4-208	ENST00000540960	PTPN22	Q9Y2R2	807 aa		10.83	□□□□□ -0.68
CHD4-208	ENST00000540960	FAM177B	A6PVY3	158 aa		10.82	□□□□□ -0.68
CHD4-208	ENST00000540960	MYC	P01106	439 aa	Predicted RBP	10.82	□□□□□ -0.68
CHD4-208	ENST00000540960	GOLGA2	Q08379	1002 aa		10.82	□□□□□ -0.68
CHD4-208	ENST00000540960	MKRN3	Q13064	507 aa	Known RBP	10.82	□□□□□ -0.68
CHD4-208	ENST00000540960	MICALL2	Q8IY33	904 aa		10.82	□□□□□ -0.68
CHD4-208	ENST00000540960	DPF3	Q92784	378 aa		10.82	□□□□□ -0.68
CHD4-208	ENST00000540960	SUPT16H	Q9Y5B9	1047 aa	Known RBP	10.82	□□□□□ -0.68
CHD4-208	ENST00000540960	MRC1	P22897	1456 aa		10.81	□□□□□ -0.68
CHD4-208	ENST00000540960		E9PSI1	815 aa		10.81	□□□□□ -0.68
CHD4-208	ENST00000540960	DIAPH1	O60610	1272 aa	Known RBP	10.81	□□□□□ -0.68
CHD4-208	ENST00000540960	KCNA4	P22459	653 aa		10.81	□□□□□ -0.68
CHD4-208	ENST00000540960	PLA2G5	P39877	138 aa		10.81	□□□□□ -0.68
CHD4-208	ENST00000540960	CCDC27	Q2M243	656 aa		10.81	□□□□□ -0.68
CHD4-208	ENST00000540960	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	10.81	□□□□□ -0.68
CHD4-208	ENST00000540960	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	10.81	□□□□□ -0.68
CHD4-208	ENST00000540960	TMEM106C	Q9BVX2	250 aa		10.81	□□□□□ -0.68
CHD4-208	ENST00000540960	SLC52A2	Q9HAB3	445 aa		10.81	□□□□□ -0.68
CHD4-208	ENST00000540960	ZNRF3	Q9ULT6	936 aa		10.81	□□□□□ -0.68
CHD4-208	ENST00000540960	ASTN2	O75129	1339 aa	Predicted RBP	10.81	□□□□□ -0.68
CHD4-208	ENST00000540960	HOXD11	P31277	338 aa	Predicted RBP	10.8	□□□□□ -0.68
CHD4-208	ENST00000540960	CALD1	Q05682	793 aa	Known RBP	10.8	□□□□□ -0.68
CHD4-208	ENST00000540960	C1orf141	Q5JVX7	400 aa		10.8	□□□□□ -0.68
CHD4-208	ENST00000540960	RBM26	Q5T8P6	1007 aa	Known RBP	10.8	□□□□□ -0.68
CHD4-208	ENST00000540960	ZNF333	Q96JL9	665 aa		10.8	□□□□□ -0.68
CHD4-208	ENST00000540960	MTMR10	Q9NXD2	777 aa		10.8	□□□□□ -0.68
CHD4-208	ENST00000540960	ZBTB12	Q9Y330	459 aa	Predicted RBP	10.8	□□□□□ -0.68
CHD4-208	ENST00000540960		H7C1D1	291 aa		10.79	□□□□□ -0.68
CHD4-208	ENST00000540960	A1BG	P04217	495 aa		10.79	□□□□□ -0.68
CHD4-208	ENST00000540960	U2AF1L5	P0DN76	240 aa	Predicted RBP	10.79	□□□□□ -0.68
CHD4-208	ENST00000540960	TNNT2	P45379	298 aa	Predicted RBP	10.79	□□□□□ -0.68
CHD4-208	ENST00000540960	U2AF1	Q01081	240 aa	Known RBP eCLIP	10.79	□□□□□ -0.68
CHD4-208	ENST00000540960	CC2D2B	Q6DHV5	1058 aa		10.79	□□□□□ -0.68
CHD4-208	ENST00000540960	AEBP1	Q8IUX7	1158 aa		10.79	□□□□□ -0.68
CHD4-208	ENST00000540960	WDR63	Q8IWG1	891 aa		10.79	□□□□□ -0.68
CHD4-208	ENST00000540960	CDCA5	Q96FF9	252 aa		10.79	□□□□□ -0.68
CHD4-208	ENST00000540960	CFHR5	Q9BXR6	569 aa		10.79	□□□□□ -0.68
CHD4-208	ENST00000540960	UBR2	Q8IWV8	1755 aa		10.79	□□□□□ -0.68
CHD4-208	ENST00000540960	MAPK8IP3	Q9UPT6	1336 aa		10.79	□□□□□ -0.68
CHD4-208	ENST00000540960	YDJC	A8MPS7	323 aa		10.78	□□□□□ -0.68
CHD4-208	ENST00000540960	UBE2Q2L	H0YL09	131 aa		10.78	□□□□□ -0.68
CHD4-208	ENST00000540960	SLC4A8	Q2Y0W8	1093 aa		10.78	□□□□□ -0.68
CHD4-208	ENST00000540960	AMOT	Q4VCS5	1084 aa		10.78	□□□□□ -0.68
CHD4-208	ENST00000540960	VSIG10	Q8N0Z9	540 aa		10.78	□□□□□ -0.68
CHD4-208	ENST00000540960	DCPS	Q96C86	337 aa	Known RBP	10.78	□□□□□ -0.68
CHD4-208	ENST00000540960	POLK	Q9UBT6	870 aa		10.78	□□□□□ -0.68
CHD4-208	ENST00000540960	RCAN3	Q9UKA8	241 aa		10.78	□□□□□ -0.68
CHD4-208	ENST00000540960	CDHR2	Q9BYE9	1310 aa		10.78	□□□□□ -0.68
CHD4-208	ENST00000540960	TTC28	Q96AY4	2481 aa		10.78	□□□□□ -0.68
CHD4-208	ENST00000540960	PRAMEF22	A3QJZ6	481 aa		10.77	□□□□□ -0.69
CHD4-208	ENST00000540960	STARD3NL	O95772	234 aa		10.77	□□□□□ -0.69
CHD4-208	ENST00000540960	PIP4K2A	P48426	406 aa	Predicted RBP	10.77	□□□□□ -0.69
CHD4-208	ENST00000540960	CD99L2	Q8TCZ2	262 aa		10.77	□□□□□ -0.69
CHD4-208	ENST00000540960	FAM122A	Q96E09	287 aa		10.77	□□□□□ -0.69
CHD4-208	ENST00000540960	MYH16	Q9H6N6	1097 aa		10.77	□□□□□ -0.69
CHD4-208	ENST00000540960	PPP4R2	Q9NY27	417 aa		10.77	□□□□□ -0.69
CHD4-208	ENST00000540960	APAF1	O14727	1248 aa		10.76	□□□□□ -0.69
CHD4-208	ENST00000540960	CT47B1	P0C2W7	299 aa	Predicted RBP	10.76	□□□□□ -0.69
CHD4-208	ENST00000540960	IL6ST	P40189	918 aa	Predicted RBP	10.76	□□□□□ -0.69
CHD4-208	ENST00000540960	LMOD3	Q0VAK6	560 aa		10.76	□□□□□ -0.69
CHD4-208	ENST00000540960	CRY2	Q49AN0	593 aa		10.76	□□□□□ -0.69
CHD4-208	ENST00000540960	TPTE2	Q6XPS3	522 aa		10.76	□□□□□ -0.69
CHD4-208	ENST00000540960	DZIP3	Q86Y13	1208 aa	Known RBP	10.76	□□□□□ -0.69
CHD4-208	ENST00000540960	STAP2	Q9UGK3	403 aa		10.76	□□□□□ -0.69
CHD4-208	ENST00000540960	SCAF8	Q9UPN6	1271 aa	Known RBP	10.76	□□□□□ -0.69
CHD4-208	ENST00000540960	EYS	Q5T1H1	3165 aa		10.75	□□□□□ -0.69
CHD4-208	ENST00000540960	ZBTB7B	O15156	539 aa	Predicted RBP	10.75	□□□□□ -0.69
CHD4-208	ENST00000540960	TNIP1	Q15025	636 aa		10.75	□□□□□ -0.69
CHD4-208	ENST00000540960	ANKRD13D	Q6ZTN6	518 aa		10.75	□□□□□ -0.69
CHD4-208	ENST00000540960	ZNF521	Q96K83	1311 aa		10.75	□□□□□ -0.69
CHD4-208	ENST00000540960	ABCC12	Q96J65	1359 aa		10.75	□□□□□ -0.69
CHD4-208	ENST00000540960		A0A1W2PPC1	479 aa		10.74	□□□□□ -0.69
CHD4-208	ENST00000540960	U2SURP	O15042	1029 aa	Known RBP	10.74	□□□□□ -0.69
CHD4-208	ENST00000540960	RNMT	O43148	476 aa	Known RBP	10.74	□□□□□ -0.69
CHD4-208	ENST00000540960	SLFN5	Q08AF3	891 aa		10.74	□□□□□ -0.69
CHD4-208	ENST00000540960	NUTM1	Q86Y26	1132 aa		10.74	□□□□□ -0.69
CHD4-208	ENST00000540960	SULF1	Q8IWU6	871 aa		10.74	□□□□□ -0.69
CHD4-208	ENST00000540960	SHISA4	Q96DD7	197 aa		10.74	□□□□□ -0.69
CHD4-208	ENST00000540960	ZNF496	Q96IT1	587 aa	Predicted RBP	10.74	□□□□□ -0.69
CHD4-208	ENST00000540960	GGA3	Q9NZ52	723 aa		10.74	□□□□□ -0.69
CHD4-208	ENST00000540960	NIP7	Q9Y221	180 aa	Known RBP eCLIP	10.74	□□□□□ -0.69

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