RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 SOGA3Q5TF21 947 aa21.97■■□□□ 1.11
CLSTN3-210ENST00000540931 TMEM57Q8N5G2 664 aa21.97■■□□□ 1.11
CLSTN3-210ENST00000540931 ZNF526Q8TF50 670 aaPredicted RBP21.97■■□□□ 1.11
CLSTN3-210ENST00000540931 ABCC12Q96J65 1359 aa21.97■■□□□ 1.11
CLSTN3-210ENST00000540931 LAMB2P55268 1798 aa21.97■■□□□ 1.11
CLSTN3-210ENST00000540931 CTSWP56202 376 aa21.96■■□□□ 1.11
CLSTN3-210ENST00000540931 MVPQ14764 893 aaKnown RBP21.96■■□□□ 1.11
CLSTN3-210ENST00000540931 TTLL6Q8N841 843 aa21.96■■□□□ 1.11
CLSTN3-210ENST00000540931 RTL9Q8NET4 1388 aa21.96■■□□□ 1.11
CLSTN3-210ENST00000540931 BBOX1O75936 387 aa21.95■■□□□ 1.1
CLSTN3-210ENST00000540931 DPEP1P16444 411 aa21.95■■□□□ 1.1
CLSTN3-210ENST00000540931 RTL5Q5HYW3 569 aaPredicted RBP21.95■■□□□ 1.1
CLSTN3-210ENST00000540931 CSF1RP07333 972 aa21.94■■□□□ 1.1
CLSTN3-210ENST00000540931 NBPF7P0C2Y1 421 aaPredicted RBP21.94■■□□□ 1.1
CLSTN3-210ENST00000540931 DALRD3Q5D0E6 543 aaKnown RBP21.94■■□□□ 1.1
CLSTN3-210ENST00000540931 CC2D2BQ6DHV5 1058 aa21.94■■□□□ 1.1
CLSTN3-210ENST00000540931 ZNF622Q969S3 477 aaKnown RBP eCLIP21.94■■□□□ 1.1
CLSTN3-210ENST00000540931 CDC5LQ99459 802 aaKnown RBP21.94■■□□□ 1.1
CLSTN3-210ENST00000540931 WWC3Q9ULE0 1092 aa21.94■■□□□ 1.1
CLSTN3-210ENST00000540931 A0A0G2JLW4 131 aa21.93■■□□□ 1.1
CLSTN3-210ENST00000540931 GNAI2P04899 355 aa21.93■■□□□ 1.1
CLSTN3-210ENST00000540931 ANKRD31Q8N7Z5 1873 aa21.93■■□□□ 1.1
CLSTN3-210ENST00000540931 TTLL11Q8NHH1 800 aa21.93■■□□□ 1.1
CLSTN3-210ENST00000540931 PLIN1O60240 522 aa21.92■■□□□ 1.1
CLSTN3-210ENST00000540931 SYNE4Q8N205 404 aa21.92■■□□□ 1.1
CLSTN3-210ENST00000540931 CCDC24Q8N4L8 307 aa21.92■■□□□ 1.1
CLSTN3-210ENST00000540931 MYH3P11055 1940 aa21.92■■□□□ 1.1
CLSTN3-210ENST00000540931 ZBTB7BO15156 539 aaPredicted RBP21.91■■□□□ 1.1
CLSTN3-210ENST00000540931 RLBP1P12271 317 aa21.91■■□□□ 1.1
CLSTN3-210ENST00000540931 IFIT5Q13325 482 aaKnown RBP21.91■■□□□ 1.1
CLSTN3-210ENST00000540931 GRAPQ13588 217 aa21.91■■□□□ 1.1
CLSTN3-210ENST00000540931 CCDC57Q2TAC2 916 aa21.91■■□□□ 1.1
CLSTN3-210ENST00000540931 RABL6Q3YEC7 729 aaPredicted RBP21.91■■□□□ 1.1
CLSTN3-210ENST00000540931 GRAPLQ8TC17 118 aaPredicted RBP21.91■■□□□ 1.1
CLSTN3-210ENST00000540931 PANK1Q8TE04 598 aa21.91■■□□□ 1.1
CLSTN3-210ENST00000540931 DLEC1Q9Y238 1755 aa21.91■■□□□ 1.1
CLSTN3-210ENST00000540931 DDX60Q8IY21 1712 aaKnown RBP21.91■■□□□ 1.1
CLSTN3-210ENST00000540931 ANKRD18BA2A2Z9 1011 aa21.9■■□□□ 1.1
CLSTN3-210ENST00000540931 KIF3CO14782 793 aa21.9■■□□□ 1.1
CLSTN3-210ENST00000540931 KCNA3P22001 575 aa21.9■■□□□ 1.1
CLSTN3-210ENST00000540931 CHRNA5P30532 468 aa21.9■■□□□ 1.1
CLSTN3-210ENST00000540931 FOXO4P98177 505 aa21.89■■□□□ 1.09
CLSTN3-210ENST00000540931 SUCLG2Q96I99 432 aa21.89■■□□□ 1.09
CLSTN3-210ENST00000540931 MEIS3Q99687 375 aa21.89■■□□□ 1.09
CLSTN3-210ENST00000540931 SUPT16HQ9Y5B9 1047 aaKnown RBP21.89■■□□□ 1.09
CLSTN3-210ENST00000540931 IGHMBP2P38935 993 aaKnown RBP21.88■■□□□ 1.09
CLSTN3-210ENST00000540931 RPS8P62241 208 aaKnown RBP21.88■■□□□ 1.09
CLSTN3-210ENST00000540931 LMBR1LQ6UX01 489 aa21.88■■□□□ 1.09
CLSTN3-210ENST00000540931 ANKRD18AQ8IVF6 992 aa21.88■■□□□ 1.09
CLSTN3-210ENST00000540931 COG6Q9Y2V7 657 aa21.88■■□□□ 1.09
CLSTN3-210ENST00000540931 JARID2Q92833 1246 aaPredicted RBP21.87■■□□□ 1.09
CLSTN3-210ENST00000540931 BICC1Q9H694 974 aaKnown RBP21.87■■□□□ 1.09
CLSTN3-210ENST00000540931 FBXO3Q9UK99 471 aa21.87■■□□□ 1.09
CLSTN3-210ENST00000540931 TNNQ9UQP3 1299 aa21.87■■□□□ 1.09
CLSTN3-210ENST00000540931 CHMP3Q9Y3E7 222 aa21.87■■□□□ 1.09
CLSTN3-210ENST00000540931 TNRC6CQ9HCJ0 1690 aaKnown RBP21.86■■□□□ 1.09
CLSTN3-210ENST00000540931 ITGA6P23229 1130 aa21.86■■□□□ 1.09
CLSTN3-210ENST00000540931 MTX1Q13505 466 aa21.86■■□□□ 1.09
CLSTN3-210ENST00000540931 TAF7LQ5H9L4 462 aa21.86■■□□□ 1.09
CLSTN3-210ENST00000540931 PRPF40BQ6NWY9 871 aaKnown RBP21.86■■□□□ 1.09
CLSTN3-210ENST00000540931 BCS1LQ9Y276 419 aa21.86■■□□□ 1.09
CLSTN3-210ENST00000540931 KIAA1551Q9HCM1 1747 aa21.86■■□□□ 1.09
CLSTN3-210ENST00000540931 RPAP2Q8IXW5 612 aaPredicted RBP21.85■■□□□ 1.09
CLSTN3-210ENST00000540931 SP8Q8IXZ3 490 aa21.85■■□□□ 1.09
CLSTN3-210ENST00000540931 RTKN2Q8IZC4 609 aa21.85■■□□□ 1.09
CLSTN3-210ENST00000540931 MPHOSPH8Q99549 860 aa21.85■■□□□ 1.09
CLSTN3-210ENST00000540931 LRRFIP2Q9Y608 721 aaKnown RBP21.85■■□□□ 1.09
CLSTN3-210ENST00000540931 PPEF1O14829 653 aaPredicted RBP21.84■■□□□ 1.09
CLSTN3-210ENST00000540931 C3orf67Q6ZVT6 689 aa21.84■■□□□ 1.09
CLSTN3-210ENST00000540931 GREM2Q9H772 168 aa21.84■■□□□ 1.09
CLSTN3-210ENST00000540931 ZBTB40Q9NUA8 1239 aa21.84■■□□□ 1.09
CLSTN3-210ENST00000540931 BSDC1Q9NW68 430 aaPredicted RBP21.84■■□□□ 1.09
CLSTN3-210ENST00000540931 BRCA1P38398 1863 aaKnown RBP21.83■■□□□ 1.09
CLSTN3-210ENST00000540931 HMMRO75330 724 aa21.83■■□□□ 1.09
CLSTN3-210ENST00000540931 CCDC93Q567U6 631 aa21.83■■□□□ 1.09
CLSTN3-210ENST00000540931 KAZALD1Q96I82 304 aa21.83■■□□□ 1.09
CLSTN3-210ENST00000540931 ATP6V0A2Q9Y487 856 aa21.83■■□□□ 1.09
CLSTN3-210ENST00000540931 COL11A2P13942 1736 aaPredicted RBP21.83■■□□□ 1.08
CLSTN3-210ENST00000540931 ANKRD44Q8N8A2 993 aa21.82■■□□□ 1.08
CLSTN3-210ENST00000540931 FAM161AQ3B820 660 aa21.81■■□□□ 1.08
CLSTN3-210ENST00000540931 C20orf194Q5TEA3 1177 aa21.81■■□□□ 1.08
CLSTN3-210ENST00000540931 SUPT20HQ8NEM7 779 aa21.81■■□□□ 1.08
CLSTN3-210ENST00000540931 ANKRD2Q9GZV1 360 aa21.81■■□□□ 1.08
CLSTN3-210ENST00000540931 VPS33BQ9H267 617 aa21.81■■□□□ 1.08
CLSTN3-210ENST00000540931 ARFGEF1Q9Y6D6 1849 aa21.8■■□□□ 1.08
CLSTN3-210ENST00000540931 ATP8B2P98198 1209 aa21.8■■□□□ 1.08
CLSTN3-210ENST00000540931 EPHA10Q5JZY3 1008 aa21.8■■□□□ 1.08
CLSTN3-210ENST00000540931 SRGAP3O43295 1099 aa21.79■■□□□ 1.08
CLSTN3-210ENST00000540931 LDHAL6AQ6ZMR3 332 aa21.79■■□□□ 1.08
CLSTN3-210ENST00000540931 C7orf43Q8WVR3 580 aa21.79■■□□□ 1.08
CLSTN3-210ENST00000540931 CELF1Q92879 486 aaKnown RBP21.79■■□□□ 1.08
CLSTN3-210ENST00000540931 SEC31BQ9NQW1 1179 aa21.79■■□□□ 1.08
CLSTN3-210ENST00000540931 APLP1P51693 650 aa21.78■■□□□ 1.08
CLSTN3-210ENST00000540931 CCDC85AQ96PX6 553 aaPredicted RBP21.78■■□□□ 1.08
CLSTN3-210ENST00000540931 C21orf2O43822 256 aa21.77■■□□□ 1.08
CLSTN3-210ENST00000540931 TOMM70O94826 608 aa21.77■■□□□ 1.08
CLSTN3-210ENST00000540931 HSP90AB4PQ58FF6 505 aa21.77■■□□□ 1.08
CLSTN3-210ENST00000540931 DNAJC5GQ8N7S2 189 aa21.77■■□□□ 1.08
CLSTN3-210ENST00000540931 PSMD1Q99460 953 aa21.77■■□□□ 1.08
CLSTN3-210ENST00000540931 COPRSQ9NQ92 184 aa21.77■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms