RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 NYXQ9GZU5 481 aa13.26□□□□□ -0.29
VPS33A-204ENST00000540669 LRRFIP2Q9Y608 721 aaKnown RBP13.26□□□□□ -0.29
VPS33A-204ENST00000540669 SERPINB2P05120 415 aa13.25□□□□□ -0.29
VPS33A-204ENST00000540669 POLA2Q14181 598 aa13.25□□□□□ -0.29
VPS33A-204ENST00000540669 SSH3Q8TE77 659 aa13.25□□□□□ -0.29
VPS33A-204ENST00000540669 BICC1Q9H694 974 aaKnown RBP13.25□□□□□ -0.29
VPS33A-204ENST00000540669 C9orf78Q9NZ63 289 aaPredicted RBP13.25□□□□□ -0.29
VPS33A-204ENST00000540669 TRMT112Q9UI30 125 aaKnown RBP13.25□□□□□ -0.29
VPS33A-204ENST00000540669 TAF1P21675 1872 aa13.25□□□□□ -0.29
VPS33A-204ENST00000540669 ARAP2Q8WZ64 1704 aa13.25□□□□□ -0.29
VPS33A-204ENST00000540669 KDM2BQ8NHM5 1336 aa13.24□□□□□ -0.29
VPS33A-204ENST00000540669 IRS4O14654 1257 aaPredicted RBP13.24□□□□□ -0.29
VPS33A-204ENST00000540669 RFX5P48382 616 aaPredicted RBP13.24□□□□□ -0.29
VPS33A-204ENST00000540669 CTSWP56202 376 aa13.24□□□□□ -0.29
VPS33A-204ENST00000540669 HDAC1Q13547 482 aaPredicted RBP13.24□□□□□ -0.29
VPS33A-204ENST00000540669 SF3B3Q15393 1217 aaKnown RBP13.24□□□□□ -0.29
VPS33A-204ENST00000540669 ERFEQ4G0M1 354 aa13.24□□□□□ -0.29
VPS33A-204ENST00000540669 C3orf67Q6ZVT6 689 aa13.24□□□□□ -0.29
VPS33A-204ENST00000540669 CNBD1Q8NA66 436 aa13.24□□□□□ -0.29
VPS33A-204ENST00000540669 SNED1Q8TER0 1413 aa13.23□□□□□ -0.29
VPS33A-204ENST00000540669 SRCAPQ6ZRS2 3230 aa13.23□□□□□ -0.29
VPS33A-204ENST00000540669 PDE8AO60658 829 aa13.23□□□□□ -0.29
VPS33A-204ENST00000540669 NEFLP07196 543 aa13.23□□□□□ -0.29
VPS33A-204ENST00000540669 MSL1Q68DK7 614 aa13.23□□□□□ -0.29
VPS33A-204ENST00000540669 NBPF5PQ86XG9 351 aaPredicted RBP13.23□□□□□ -0.29
VPS33A-204ENST00000540669 NUTM1Q86Y26 1132 aa13.23□□□□□ -0.29
VPS33A-204ENST00000540669 RPAP2Q8IXW5 612 aaPredicted RBP13.23□□□□□ -0.29
VPS33A-204ENST00000540669 TTLL11Q8NHH1 800 aa13.23□□□□□ -0.29
VPS33A-204ENST00000540669 ARXQ96QS3 562 aa13.23□□□□□ -0.29
VPS33A-204ENST00000540669 C1orf115Q9H7X2 142 aa13.23□□□□□ -0.29
VPS33A-204ENST00000540669 PNMA6EA0A0J9YXQ4 647 aa13.22□□□□□ -0.29
VPS33A-204ENST00000540669 TPTE2Q6XPS3 522 aa13.22□□□□□ -0.29
VPS33A-204ENST00000540669 BICDL1Q6ZP65 573 aa13.22□□□□□ -0.29
VPS33A-204ENST00000540669 HDAC5Q9UQL6 1122 aa13.22□□□□□ -0.29
VPS33A-204ENST00000540669 ATP8B2P98198 1209 aa13.21□□□□□ -0.29
VPS33A-204ENST00000540669 KLHL34Q8N239 644 aa13.21□□□□□ -0.29
VPS33A-204ENST00000540669 JARID2Q92833 1246 aaPredicted RBP13.21□□□□□ -0.29
VPS33A-204ENST00000540669 CACNA1SQ13698 1873 aa13.21□□□□□ -0.3
VPS33A-204ENST00000540669 DUOX1Q9NRD9 1551 aa13.2□□□□□ -0.3
VPS33A-204ENST00000540669 HCLS1P14317 486 aaPredicted RBP13.2□□□□□ -0.3
VPS33A-204ENST00000540669 HSP90B1P14625 803 aaKnown RBP13.2□□□□□ -0.3
VPS33A-204ENST00000540669 HOXA10P31260 410 aaPredicted RBP13.2□□□□□ -0.3
VPS33A-204ENST00000540669 BRIP1Q9BX63 1249 aa13.2□□□□□ -0.3
VPS33A-204ENST00000540669 COPRSQ9NQ92 184 aa13.2□□□□□ -0.3
VPS33A-204ENST00000540669 NOP58Q9Y2X3 529 aaKnown RBP13.2□□□□□ -0.3
VPS33A-204ENST00000540669 ARFGEF1Q9Y6D6 1849 aa13.2□□□□□ -0.3
VPS33A-204ENST00000540669 PTPN12Q05209 780 aaKnown RBP13.19□□□□□ -0.3
VPS33A-204ENST00000540669 FAM161AQ3B820 660 aa13.19□□□□□ -0.3
VPS33A-204ENST00000540669 LMBR1LQ6UX01 489 aa13.19□□□□□ -0.3
VPS33A-204ENST00000540669 SMC5Q8IY18 1101 aa13.19□□□□□ -0.3
VPS33A-204ENST00000540669 PARP3Q9Y6F1 533 aa13.19□□□□□ -0.3
VPS33A-204ENST00000540669 ST5P78524 1137 aa13.18□□□□□ -0.3
VPS33A-204ENST00000540669 RTL5Q5HYW3 569 aaPredicted RBP13.18□□□□□ -0.3
VPS33A-204ENST00000540669 GREM2Q9H772 168 aa13.18□□□□□ -0.3
VPS33A-204ENST00000540669 PPP4R2Q9NY27 417 aa13.18□□□□□ -0.3
VPS33A-204ENST00000540669 SLX4Q8IY92 1834 aa13.18□□□□□ -0.3
VPS33A-204ENST00000540669 FAM177BA6PVY3 158 aa13.17□□□□□ -0.3
VPS33A-204ENST00000540669 DCTPP1Q9H773 170 aa13.17□□□□□ -0.3
VPS33A-204ENST00000540669 FBXO3Q9UK99 471 aa13.17□□□□□ -0.3
VPS33A-204ENST00000540669 SRGAP3O43295 1099 aa13.16□□□□□ -0.3
VPS33A-204ENST00000540669 IGHDP01880 384 aa13.16□□□□□ -0.3
VPS33A-204ENST00000540669 SRGNP10124 158 aa13.16□□□□□ -0.3
VPS33A-204ENST00000540669 CCDC152Q4G0S7 254 aa13.16□□□□□ -0.3
VPS33A-204ENST00000540669 PDZRN3Q9UPQ7 1066 aa13.16□□□□□ -0.3
VPS33A-204ENST00000540669 GOLGB1Q14789 3259 aaKnown RBP13.15□□□□□ -0.3
VPS33A-204ENST00000540669 CHD4Q14839 1912 aa13.15□□□□□ -0.3
VPS33A-204ENST00000540669 HMMRO75330 724 aa13.15□□□□□ -0.3
VPS33A-204ENST00000540669 CIAO1O76071 339 aa13.15□□□□□ -0.3
VPS33A-204ENST00000540669 ITGA6P23229 1130 aa13.15□□□□□ -0.3
VPS33A-204ENST00000540669 ATG9AQ7Z3C6 839 aa13.15□□□□□ -0.3
VPS33A-204ENST00000540669 CCDC24Q8N4L8 307 aa13.15□□□□□ -0.3
VPS33A-204ENST00000540669 NLRP3Q96P20 1036 aa13.15□□□□□ -0.3
VPS33A-204ENST00000540669 CRAMP1Q96RY5 1269 aa13.15□□□□□ -0.3
VPS33A-204ENST00000540669 GTF3C3Q9Y5Q9 886 aa13.15□□□□□ -0.3
VPS33A-204ENST00000540669 ZNF646O15015 1829 aaPredicted RBP13.15□□□□□ -0.3
VPS33A-204ENST00000540669 FER1L6Q2WGJ9 1857 aa13.14□□□□□ -0.31
VPS33A-204ENST00000540669 ZNF609O15014 1411 aa13.14□□□□□ -0.31
VPS33A-204ENST00000540669 NPHP1O15259 732 aa13.14□□□□□ -0.31
VPS33A-204ENST00000540669 KCNA3P22001 575 aa13.14□□□□□ -0.31
VPS33A-204ENST00000540669 VGLL2Q8N8G2 317 aa13.14□□□□□ -0.31
VPS33A-204ENST00000540669 SEC31BQ9NQW1 1179 aa13.14□□□□□ -0.31
VPS33A-204ENST00000540669 CD2APQ9Y5K6 639 aa13.14□□□□□ -0.31
VPS33A-204ENST00000540669 PDE6BP35913 854 aa13.13□□□□□ -0.31
VPS33A-204ENST00000540669 STYK1Q6J9G0 422 aa13.13□□□□□ -0.31
VPS33A-204ENST00000540669 CELF1Q92879 486 aaKnown RBP13.13□□□□□ -0.31
VPS33A-204ENST00000540669 PA2G4Q9UQ80 394 aaKnown RBP13.13□□□□□ -0.31
VPS33A-204ENST00000540669 SALL3Q9BXA9 1300 aa13.13□□□□□ -0.31
VPS33A-204ENST00000540669 EYA2O00167 538 aa13.12□□□□□ -0.31
VPS33A-204ENST00000540669 NPR1P16066 1061 aa13.12□□□□□ -0.31
VPS33A-204ENST00000540669 IFIT5Q13325 482 aaKnown RBP13.12□□□□□ -0.31
VPS33A-204ENST00000540669 GRAPQ13588 217 aa13.12□□□□□ -0.31
VPS33A-204ENST00000540669 CENPQQ7L2Z9 268 aaPredicted RBP13.12□□□□□ -0.31
VPS33A-204ENST00000540669 KLHDC4Q8TBB5 520 aa13.12□□□□□ -0.31
VPS33A-204ENST00000540669 GRAPLQ8TC17 118 aaPredicted RBP13.12□□□□□ -0.31
VPS33A-204ENST00000540669 GCC1Q96CN9 775 aa13.12□□□□□ -0.31
VPS33A-204ENST00000540669 FHDC1Q9C0D6 1143 aaPredicted RBP13.12□□□□□ -0.31
VPS33A-204ENST00000540669 RIPOR2Q9Y4F9 1068 aa13.12□□□□□ -0.31
VPS33A-204ENST00000540669 IRS2Q9Y4H2 1338 aa13.12□□□□□ -0.31
VPS33A-204ENST00000540669 ANKRD18BA2A2Z9 1011 aa13.11□□□□□ -0.31
VPS33A-204ENST00000540669 SASH1O94885 1247 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms