RNA–Protein interactions for RNA: ENST00000540663.5

SYNE1-238, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 776 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-238ENST00000540663 SUPT20HQ8NEM7 779 aa15.1■□□□□ 0.01
SYNE1-238ENST00000540663 RBM46Q8TBY0 533 aaKnown RBP15.1■□□□□ 0.01
SYNE1-238ENST00000540663 RRAGCQ9HB90 399 aa15.1■□□□□ 0.01
SYNE1-238ENST00000540663 CDHR2Q9BYE9 1310 aa15.1■□□□□ 0.01
SYNE1-238ENST00000540663 PDE8AO60658 829 aa15.09■□□□□ 0.01
SYNE1-238ENST00000540663 CCDC152Q4G0S7 254 aa15.09■□□□□ 0.01
SYNE1-238ENST00000540663 RTL5Q5HYW3 569 aaPredicted RBP15.09■□□□□ 0.01
SYNE1-238ENST00000540663 DNAAF4Q8WXU2 420 aa15.09■□□□□ 0.01
SYNE1-238ENST00000540663 JDP2Q8WYK2 163 aa15.09■□□□□ 0.01
SYNE1-238ENST00000540663 ZNF428Q96B54 188 aa15.09■□□□□ 0.01
SYNE1-238ENST00000540663 NEURL1BA8MQ27 555 aa15.08■□□□□ 0
SYNE1-238ENST00000540663 RTFDC1Q9BY42 306 aaPredicted RBP15.08■□□□□ 0
SYNE1-238ENST00000540663 LRRC37AA6NMS7 1700 aa15.07■□□□□ 0
SYNE1-238ENST00000540663 FZD9O00144 591 aa15.07■□□□□ 0
SYNE1-238ENST00000540663 FSTL1Q12841 308 aa15.07■□□□□ 0
SYNE1-238ENST00000540663 DIEXFQ68CQ4 756 aaKnown RBP15.07■□□□□ 0
SYNE1-238ENST00000540663 DPP8Q6V1X1 898 aaPredicted RBP15.07■□□□□ 0
SYNE1-238ENST00000540663 MPNDQ8N594 471 aa15.07■□□□□ 0
SYNE1-238ENST00000540663 LINS1Q8NG48 757 aa15.07■□□□□ 0
SYNE1-238ENST00000540663 L3MBTL3Q96JM7 780 aaPredicted RBP15.07■□□□□ 0
SYNE1-238ENST00000540663 HSPA6P17066 643 aa15.06■□□□□ 0
SYNE1-238ENST00000540663 SLFN5Q08AF3 891 aa15.06■□□□□ 0
SYNE1-238ENST00000540663 GCKRQ14397 625 aa15.06■□□□□ 0
SYNE1-238ENST00000540663 CWF19L2Q2TBE0 894 aaKnown RBP15.06■□□□□ 0
SYNE1-238ENST00000540663 LARGE2Q8N3Y3 721 aa15.06■□□□□ 0
SYNE1-238ENST00000540663 CEP350Q5VT06 3117 aa15.06■□□□□ 0
SYNE1-238ENST00000540663 IQCA1LA6NCM1 817 aa15.05■□□□□ -0
SYNE1-238ENST00000540663 DDNO94850 711 aaPredicted RBP15.05■□□□□ -0
SYNE1-238ENST00000540663 CTSWP56202 376 aa15.05■□□□□ -0
SYNE1-238ENST00000540663 RPS8P62241 208 aaKnown RBP15.05■□□□□ -0
SYNE1-238ENST00000540663 NIM1KQ8IY84 436 aa15.05■□□□□ -0
SYNE1-238ENST00000540663 CELF1Q92879 486 aaKnown RBP15.05■□□□□ -0
SYNE1-238ENST00000540663 RTL9Q8NET4 1388 aa15.05■□□□□ -0
SYNE1-238ENST00000540663 ZNF541Q9H0D2 1346 aa15.04■□□□□ -0
SYNE1-238ENST00000540663 POTECB2RU33 542 aa15.04■□□□□ -0
SYNE1-238ENST00000540663 H7C1W4 665 aa15.04■□□□□ -0
SYNE1-238ENST00000540663 PPIP5K2O43314 1243 aa15.04■□□□□ -0
SYNE1-238ENST00000540663 EIF6P56537 245 aaKnown RBP15.04■□□□□ -0
SYNE1-238ENST00000540663 SLC51AQ86UW1 340 aa15.04■□□□□ -0
SYNE1-238ENST00000540663 GPC2Q8N158 579 aa15.04■□□□□ -0
SYNE1-238ENST00000540663 SMC1BQ8NDV3 1235 aa15.04■□□□□ -0
SYNE1-238ENST00000540663 KIAA2012Q0VF49 1180 aa15.03■□□□□ -0
SYNE1-238ENST00000540663 UBE3BQ7Z3V4 1068 aa15.03■□□□□ -0
SYNE1-238ENST00000540663 TRMT2AQ8IZ69 625 aaKnown RBP15.03■□□□□ -0
SYNE1-238ENST00000540663 JARID2Q92833 1246 aaPredicted RBP15.03■□□□□ -0
SYNE1-238ENST00000540663 CDC5LQ99459 802 aaKnown RBP15.03■□□□□ -0
SYNE1-238ENST00000540663 TAF1P21675 1872 aa15.03■□□□□ -0
SYNE1-238ENST00000540663 SCN4AP35499 1836 aa15.03■□□□□ -0
SYNE1-238ENST00000540663 COL4A5P29400 1685 aa15.03■□□□□ -0
SYNE1-238ENST00000540663 MYH3P11055 1940 aa15.02■□□□□ -0
SYNE1-238ENST00000540663 CT47B1P0C2W7 299 aaPredicted RBP15.02■□□□□ -0
SYNE1-238ENST00000540663 AOC3Q16853 763 aa15.02■□□□□ -0
SYNE1-238ENST00000540663 BEND3Q5T5X7 828 aa15.02■□□□□ -0
SYNE1-238ENST00000540663 TTLL11Q8NHH1 800 aa15.02■□□□□ -0
SYNE1-238ENST00000540663 PLA2G12BQ9BX93 195 aa15.02■□□□□ -0
SYNE1-238ENST00000540663 SEC31BQ9NQW1 1179 aa15.02■□□□□ -0
SYNE1-238ENST00000540663 DUOX1Q9NRD9 1551 aa15.02□□□□□ -0.01
SYNE1-238ENST00000540663 F6X3S4 739 aa15.01□□□□□ -0.01
SYNE1-238ENST00000540663 APLP1P51693 650 aa15.01□□□□□ -0.01
SYNE1-238ENST00000540663 CASP7P55210 303 aa15.01□□□□□ -0.01
SYNE1-238ENST00000540663 ANKRD18AQ8IVF6 992 aa15.01□□□□□ -0.01
SYNE1-238ENST00000540663 MIER1Q8N108 512 aa15.01□□□□□ -0.01
SYNE1-238ENST00000540663 EYA3Q99504 573 aa15.01□□□□□ -0.01
SYNE1-238ENST00000540663 ZNRF3Q9ULT6 936 aa15.01□□□□□ -0.01
SYNE1-238ENST00000540663 PTPRCP08575 1304 aa15□□□□□ -0.01
SYNE1-238ENST00000540663 ALDH1L1O75891 902 aa15□□□□□ -0.01
SYNE1-238ENST00000540663 ALDH1L2Q3SY69 923 aa15□□□□□ -0.01
SYNE1-238ENST00000540663 MRPL50Q8N5N7 158 aaKnown RBP15□□□□□ -0.01
SYNE1-238ENST00000540663 CDCA7LQ96GN5 454 aa15□□□□□ -0.01
SYNE1-238ENST00000540663 TAF1DQ9H5J8 278 aaPredicted RBP15□□□□□ -0.01
SYNE1-238ENST00000540663 PODXL2Q9NZ53 605 aa15□□□□□ -0.01
SYNE1-238ENST00000540663 HACL1Q9UJ83 578 aa15□□□□□ -0.01
SYNE1-238ENST00000540663 NSFL1CQ9UNZ2 370 aaKnown RBP15□□□□□ -0.01
SYNE1-238ENST00000540663 LTBP1Q14766 1721 aa15□□□□□ -0.01
SYNE1-238ENST00000540663 COL4A1P02462 1669 aa15□□□□□ -0.01
SYNE1-238ENST00000540663 GPSM2P81274 684 aa14.99□□□□□ -0.01
SYNE1-238ENST00000540663 C6orf229H3BNL8 230 aa14.98□□□□□ -0.01
SYNE1-238ENST00000540663 GRM8O00222 908 aa14.98□□□□□ -0.01
SYNE1-238ENST00000540663 CSF1RP07333 972 aa14.98□□□□□ -0.01
SYNE1-238ENST00000540663 LMOD1P29536 600 aaPredicted RBP14.98□□□□□ -0.01
SYNE1-238ENST00000540663 TNIP1Q15025 636 aa14.98□□□□□ -0.01
SYNE1-238ENST00000540663 WASHC4Q2M389 1173 aa14.98□□□□□ -0.01
SYNE1-238ENST00000540663 PNMA8AQ86V59 439 aaPredicted RBP14.98□□□□□ -0.01
SYNE1-238ENST00000540663 LDHDQ86WU2 507 aa14.98□□□□□ -0.01
SYNE1-238ENST00000540663 SSH1Q8WYL5 1049 aa14.98□□□□□ -0.01
SYNE1-238ENST00000540663 CCDC85AQ96PX6 553 aaPredicted RBP14.98□□□□□ -0.01
SYNE1-238ENST00000540663 SRCIN1Q9C0H9 1055 aa14.98□□□□□ -0.01
SYNE1-238ENST00000540663 GREM2Q9H772 168 aa14.98□□□□□ -0.01
SYNE1-238ENST00000540663 BSDC1Q9NW68 430 aaPredicted RBP14.98□□□□□ -0.01
SYNE1-238ENST00000540663 ANKIB1Q9P2G1 1089 aa14.98□□□□□ -0.01
SYNE1-238ENST00000540663 POLLQ9UGP5 575 aa14.98□□□□□ -0.01
SYNE1-238ENST00000540663 GGA1Q9UJY5 639 aa14.98□□□□□ -0.01
SYNE1-238ENST00000540663 GJA3Q9Y6H8 435 aa14.98□□□□□ -0.01
SYNE1-238ENST00000540663 XDHP47989 1333 aa14.97□□□□□ -0.01
SYNE1-238ENST00000540663 EPHX2P34913 555 aa14.97□□□□□ -0.01
SYNE1-238ENST00000540663 CHADLQ6NUI6 762 aa14.97□□□□□ -0.01
SYNE1-238ENST00000540663 SLC4A10Q6U841 1118 aa14.97□□□□□ -0.01
SYNE1-238ENST00000540663 TBC1D16Q8TBP0 767 aa14.97□□□□□ -0.01
SYNE1-238ENST00000540663 UFL1O94874 794 aa14.96□□□□□ -0.01
SYNE1-238ENST00000540663 IGHMBP2P38935 993 aaKnown RBP14.96□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms