RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 DDX11Q96FC9 970 aa12.75□□□□□ -0.37
CLIP1-213ENST00000540338 ZNF335Q9H4Z2 1342 aaPredicted RBP12.75□□□□□ -0.37
CLIP1-213ENST00000540338 ESPNB1AK53 854 aa12.75□□□□□ -0.37
CLIP1-213ENST00000540338 IDH1O75874 414 aaKnown RBP12.75□□□□□ -0.37
CLIP1-213ENST00000540338 SYT1P21579 422 aa12.75□□□□□ -0.37
CLIP1-213ENST00000540338 NFXL1Q6ZNB6 911 aa12.75□□□□□ -0.37
CLIP1-213ENST00000540338 USP48Q86UV5 1035 aa12.75□□□□□ -0.37
CLIP1-213ENST00000540338 FAM89AQ96GI7 184 aa12.75□□□□□ -0.37
CLIP1-213ENST00000540338 F13A1P00488 732 aa12.74□□□□□ -0.37
CLIP1-213ENST00000540338 TCIRG1Q13488 830 aa12.74□□□□□ -0.37
CLIP1-213ENST00000540338 EDC3Q96F86 508 aaKnown RBP12.74□□□□□ -0.37
CLIP1-213ENST00000540338 DNAJC5Q9H3Z4 198 aa12.74□□□□□ -0.37
CLIP1-213ENST00000540338 SALL3Q9BXA9 1300 aa12.74□□□□□ -0.37
CLIP1-213ENST00000540338 EPHA10Q5JZY3 1008 aa12.74□□□□□ -0.37
CLIP1-213ENST00000540338 ZNF594Q96JF6 807 aaPredicted RBP12.74□□□□□ -0.37
CLIP1-213ENST00000540338 SPATA32Q96LK8 384 aa12.74□□□□□ -0.37
CLIP1-213ENST00000540338 A0A1B0GUL7 405 aa12.74□□□□□ -0.37
CLIP1-213ENST00000540338 GOLGA6L6A8MZA4 724 aa12.74□□□□□ -0.37
CLIP1-213ENST00000540338 ZFYP08048 801 aaPredicted RBP12.74□□□□□ -0.37
CLIP1-213ENST00000540338 PTPN12Q05209 780 aaKnown RBP12.74□□□□□ -0.37
CLIP1-213ENST00000540338 PDIA6Q15084 440 aa12.74□□□□□ -0.37
CLIP1-213ENST00000540338 ATP2B3Q16720 1220 aa12.74□□□□□ -0.37
CLIP1-213ENST00000540338 CCDC183Q5T5S1 534 aa12.74□□□□□ -0.37
CLIP1-213ENST00000540338 KBTBD3Q8NAB2 608 aa12.74□□□□□ -0.37
CLIP1-213ENST00000540338 A0A0D9SFI3 127 aa12.74□□□□□ -0.37
CLIP1-213ENST00000540338 DBNLQ9UJU6 430 aaKnown RBP12.74□□□□□ -0.37
CLIP1-213ENST00000540338 NCOA3Q9Y6Q9 1424 aa12.74□□□□□ -0.37
CLIP1-213ENST00000540338 UBE2HP62256 183 aa12.73□□□□□ -0.37
CLIP1-213ENST00000540338 LRSAM1Q6UWE0 723 aa12.73□□□□□ -0.37
CLIP1-213ENST00000540338 SCAND2PQ9GZW5 306 aaPredicted RBP12.73□□□□□ -0.37
CLIP1-213ENST00000540338 NDUFB9Q9Y6M9 179 aa12.73□□□□□ -0.37
CLIP1-213ENST00000540338 RGPD8O14715 1765 aaPredicted RBP12.73□□□□□ -0.37
CLIP1-213ENST00000540338 MST1RQ04912 1400 aa12.73□□□□□ -0.37
CLIP1-213ENST00000540338 CCDC73Q6ZRK6 1079 aa12.73□□□□□ -0.37
CLIP1-213ENST00000540338 ZSWIM6Q9HCJ5 1215 aa12.73□□□□□ -0.37
CLIP1-213ENST00000540338 CNPY2Q9Y2B0 182 aa12.73□□□□□ -0.37
CLIP1-213ENST00000540338 PXDNQ92626 1479 aa12.73□□□□□ -0.37
CLIP1-213ENST00000540338 RNF113AO15541 343 aaKnown RBP12.73□□□□□ -0.37
CLIP1-213ENST00000540338 IGHMBP2P38935 993 aaKnown RBP12.73□□□□□ -0.37
CLIP1-213ENST00000540338 SASS6Q6UVJ0 657 aa12.73□□□□□ -0.37
CLIP1-213ENST00000540338 MAP4K1Q92918 833 aa12.73□□□□□ -0.37
CLIP1-213ENST00000540338 BRF1Q92994 677 aa12.73□□□□□ -0.37
CLIP1-213ENST00000540338 CCDC39Q9UFE4 941 aa12.73□□□□□ -0.37
CLIP1-213ENST00000540338 CFAP45Q9UL16 551 aa12.73□□□□□ -0.37
CLIP1-213ENST00000540338 RPS6KB1P23443 525 aa12.72□□□□□ -0.37
CLIP1-213ENST00000540338 ZNF396Q96N95 335 aaPredicted RBP12.72□□□□□ -0.37
CLIP1-213ENST00000540338 HELLSQ9NRZ9 838 aa12.72□□□□□ -0.37
CLIP1-213ENST00000540338 USP42Q9H9J4 1324 aaKnown RBP12.72□□□□□ -0.37
CLIP1-213ENST00000540338 DCCP43146 1447 aa12.72□□□□□ -0.37
CLIP1-213ENST00000540338 FSD2A1L4K1 749 aa12.72□□□□□ -0.37
CLIP1-213ENST00000540338 DDIT3P35638 169 aa12.72□□□□□ -0.37
CLIP1-213ENST00000540338 TRIM29Q14134 588 aa12.72□□□□□ -0.37
CLIP1-213ENST00000540338 DDB1Q16531 1140 aa12.72□□□□□ -0.37
CLIP1-213ENST00000540338 PIP4K2BP78356 416 aa12.72□□□□□ -0.37
CLIP1-213ENST00000540338 DZIP3Q86Y13 1208 aaKnown RBP12.72□□□□□ -0.37
CLIP1-213ENST00000540338 HMGN5P82970 282 aaKnown RBP12.72□□□□□ -0.37
CLIP1-213ENST00000540338 CCDC129Q6ZRS4 1044 aa12.72□□□□□ -0.37
CLIP1-213ENST00000540338 Q6ZUG5 572 aa12.72□□□□□ -0.37
CLIP1-213ENST00000540338 KAT6BQ8WYB5 2073 aa12.71□□□□□ -0.37
CLIP1-213ENST00000540338 IRS4O14654 1257 aaPredicted RBP12.71□□□□□ -0.37
CLIP1-213ENST00000540338 CCDC192P0DO97 292 aa12.71□□□□□ -0.37
CLIP1-213ENST00000540338 CEBPZQ03701 1054 aaKnown RBP12.71□□□□□ -0.37
CLIP1-213ENST00000540338 TTF1Q15361 905 aaPredicted RBP12.71□□□□□ -0.37
CLIP1-213ENST00000540338 HAUS7Q99871 368 aa12.71□□□□□ -0.37
CLIP1-213ENST00000540338 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.71□□□□□ -0.37
CLIP1-213ENST00000540338 ZNF652Q9Y2D9 606 aa12.71□□□□□ -0.37
CLIP1-213ENST00000540338 UTYO14607 1347 aa12.71□□□□□ -0.37
CLIP1-213ENST00000540338 H7C1W4 665 aa12.71□□□□□ -0.37
CLIP1-213ENST00000540338 PRIM1P49642 420 aaKnown RBP12.71□□□□□ -0.37
CLIP1-213ENST00000540338 ERICH2A1L162 156 aa12.71□□□□□ -0.38
CLIP1-213ENST00000540338 ZNF213O14771 459 aa12.71□□□□□ -0.38
CLIP1-213ENST00000540338 ZNF445P59923 1031 aa12.71□□□□□ -0.38
CLIP1-213ENST00000540338 AIDAQ96BJ3 306 aa12.71□□□□□ -0.38
CLIP1-213ENST00000540338 ASAP1Q9ULH1 1129 aa12.71□□□□□ -0.38
CLIP1-213ENST00000540338 GOLGA6L19H0YKK7 550 aa12.7□□□□□ -0.38
CLIP1-213ENST00000540338 ADCK5Q3MIX3 580 aa12.7□□□□□ -0.38
CLIP1-213ENST00000540338 CLEC17AQ6ZS10 378 aa12.7□□□□□ -0.38
CLIP1-213ENST00000540338 LRRC2Q9BYS8 371 aa12.7□□□□□ -0.38
CLIP1-213ENST00000540338 GNL3LQ9NVN8 582 aaKnown RBP12.7□□□□□ -0.38
CLIP1-213ENST00000540338 NFAT5O94916 1531 aa12.7□□□□□ -0.38
CLIP1-213ENST00000540338 SLC5A1P13866 664 aa12.7□□□□□ -0.38
CLIP1-213ENST00000540338 DNM1Q05193 864 aaKnown RBP12.7□□□□□ -0.38
CLIP1-213ENST00000540338 NACAP1Q9BZK3 213 aa12.7□□□□□ -0.38
CLIP1-213ENST00000540338 NUP62CLQ9H1M0 184 aa12.7□□□□□ -0.38
CLIP1-213ENST00000540338 TNMDQ9H2S6 317 aa12.7□□□□□ -0.38
CLIP1-213ENST00000540338 GPR108Q9NPR9 543 aa12.7□□□□□ -0.38
CLIP1-213ENST00000540338 ATP6V1AP38606 617 aa12.7□□□□□ -0.38
CLIP1-213ENST00000540338 CCT2P78371 535 aaKnown RBP12.7□□□□□ -0.38
CLIP1-213ENST00000540338 DHX32Q7L7V1 743 aaKnown RBP12.7□□□□□ -0.38
CLIP1-213ENST00000540338 CDCA7Q9BWT1 371 aaPredicted RBP12.7□□□□□ -0.38
CLIP1-213ENST00000540338 NALCNQ8IZF0 1738 aa12.7□□□□□ -0.38
CLIP1-213ENST00000540338 BECN2A8MW95 431 aa12.69□□□□□ -0.38
CLIP1-213ENST00000540338 UQCRFS1P1P0C7P4 283 aa12.69□□□□□ -0.38
CLIP1-213ENST00000540338 ACSBG1Q96GR2 724 aa12.69□□□□□ -0.38
CLIP1-213ENST00000540338 TFIP11Q9UBB9 837 aaKnown RBP12.69□□□□□ -0.38
CLIP1-213ENST00000540338 HAND2P61296 217 aa12.69□□□□□ -0.38
CLIP1-213ENST00000540338 LRRC24Q50LG9 513 aa12.69□□□□□ -0.38
CLIP1-213ENST00000540338 XAGE2Q96GT9 111 aa12.69□□□□□ -0.38
CLIP1-213ENST00000540338 CPDO75976 1380 aa12.69□□□□□ -0.38
CLIP1-213ENST00000540338 NBPF26B4DH59 902 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms