RNA–Protein interactions for RNA: ENST00000539338.6

CACNB1-206, Transcript of calcium voltage-gated channel auxiliary subunit beta 1, humanhuman

TSL 1 (best)

Gene CACNB1, Length 5,308 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CACNB1-206ENST00000539338 CCDC148Q8NFR7 591 aa16.81■□□□□ 0.28
CACNB1-206ENST00000539338 HMG20BQ9P0W2 317 aa16.81■□□□□ 0.28
CACNB1-206ENST00000539338 CASQ1P31415 396 aa16.81■□□□□ 0.28
CACNB1-206ENST00000539338 ATP8B2P98198 1209 aa16.81■□□□□ 0.28
CACNB1-206ENST00000539338 KIF4BQ2VIQ3 1234 aa16.81■□□□□ 0.28
CACNB1-206ENST00000539338 ANKRD13DQ6ZTN6 518 aa16.81■□□□□ 0.28
CACNB1-206ENST00000539338 USP48Q86UV5 1035 aa16.81■□□□□ 0.28
CACNB1-206ENST00000539338 SPDYE4A6NLX3 237 aa16.8■□□□□ 0.28
CACNB1-206ENST00000539338 IARSP41252 1262 aaKnown RBP16.8■□□□□ 0.28
CACNB1-206ENST00000539338 ZNF710Q8N1W2 664 aa16.8■□□□□ 0.28
CACNB1-206ENST00000539338 CCDC191Q8NCU4 936 aa16.8■□□□□ 0.28
CACNB1-206ENST00000539338 SNX21Q969T3 373 aa16.8■□□□□ 0.28
CACNB1-206ENST00000539338 MYCNP04198 464 aaPredicted RBP16.8■□□□□ 0.28
CACNB1-206ENST00000539338 TMEM67Q5HYA8 995 aa16.8■□□□□ 0.28
CACNB1-206ENST00000539338 ZNF397Q8NF99 534 aaPredicted RBP16.8■□□□□ 0.28
CACNB1-206ENST00000539338 RBM8AQ9Y5S9 174 aaKnown RBP16.8■□□□□ 0.28
CACNB1-206ENST00000539338 KIF5CO60282 957 aa16.8■□□□□ 0.28
CACNB1-206ENST00000539338 PHACTR3Q96KR7 559 aa16.8■□□□□ 0.28
CACNB1-206ENST00000539338 PER1O15534 1290 aaPredicted RBP16.8■□□□□ 0.28
CACNB1-206ENST00000539338 TPTE2Q6XPS3 522 aa16.79■□□□□ 0.28
CACNB1-206ENST00000539338 RNF41Q9H4P4 317 aaPredicted RBP16.79■□□□□ 0.28
CACNB1-206ENST00000539338 ZBTB40Q9NUA8 1239 aa16.79■□□□□ 0.28
CACNB1-206ENST00000539338 NLRP5P59047 1200 aa16.79■□□□□ 0.28
CACNB1-206ENST00000539338 DNMT1P26358 1616 aaKnown RBP16.79■□□□□ 0.28
CACNB1-206ENST00000539338 KIAA0754O94854 1291 aa16.79■□□□□ 0.28
CACNB1-206ENST00000539338 SNRPA1P09661 255 aaKnown RBP16.79■□□□□ 0.28
CACNB1-206ENST00000539338 SLC39A6Q13433 755 aa16.79■□□□□ 0.28
CACNB1-206ENST00000539338 SUPT20HQ8NEM7 779 aa16.79■□□□□ 0.28
CACNB1-206ENST00000539338 TAF4BQ92750 862 aa16.79■□□□□ 0.28
CACNB1-206ENST00000539338 SAMD9Q5K651 1589 aa16.79■□□□□ 0.28
CACNB1-206ENST00000539338 TRPM2O94759 1503 aa16.79■□□□□ 0.28
CACNB1-206ENST00000539338 NEFHP12036 1026 aa16.78■□□□□ 0.28
CACNB1-206ENST00000539338 MTHFSDQ2M296 383 aaKnown RBP16.78■□□□□ 0.28
CACNB1-206ENST00000539338 CABLES1Q8TDN4 633 aa16.78■□□□□ 0.28
CACNB1-206ENST00000539338 XAGE3Q8WTP9 111 aa16.78■□□□□ 0.28
CACNB1-206ENST00000539338 PA2G4Q9UQ80 394 aaKnown RBP16.78■□□□□ 0.28
CACNB1-206ENST00000539338 SPA17Q15506 151 aa16.78■□□□□ 0.28
CACNB1-206ENST00000539338 UVSSAQ2YD98 709 aa16.78■□□□□ 0.28
CACNB1-206ENST00000539338 METAP2P50579 478 aaKnown RBP eCLIP16.78■□□□□ 0.28
CACNB1-206ENST00000539338 CEP85Q6P2H3 762 aa16.78■□□□□ 0.28
CACNB1-206ENST00000539338 MCM5P33992 734 aa16.78■□□□□ 0.28
CACNB1-206ENST00000539338 TAX1BP1Q86VP1 789 aa16.78■□□□□ 0.28
CACNB1-206ENST00000539338 NCOA7Q8NI08 942 aa16.78■□□□□ 0.28
CACNB1-206ENST00000539338 NUP88Q99567 741 aaPredicted RBP16.78■□□□□ 0.28
CACNB1-206ENST00000539338 PHAXQ9H814 394 aaKnown RBP16.78■□□□□ 0.28
CACNB1-206ENST00000539338 SHANK2Q9UPX8 1470 aa16.78■□□□□ 0.28
CACNB1-206ENST00000539338 H0YIN7 160 aa16.77■□□□□ 0.28
CACNB1-206ENST00000539338 DCTPP1Q9H773 170 aa16.77■□□□□ 0.28
CACNB1-206ENST00000539338 TCIRG1Q13488 830 aa16.77■□□□□ 0.28
CACNB1-206ENST00000539338 COPS6Q7L5N1 327 aa16.77■□□□□ 0.28
CACNB1-206ENST00000539338 CCDC194A0A1B0GVG4 234 aa16.77■□□□□ 0.28
CACNB1-206ENST00000539338 PIK3C2GO75747 1445 aa16.77■□□□□ 0.28
CACNB1-206ENST00000539338 CATIPQ7Z7H3 387 aa16.77■□□□□ 0.28
CACNB1-206ENST00000539338 ZNF444Q8N0Y2 327 aaPredicted RBP16.77■□□□□ 0.28
CACNB1-206ENST00000539338 SLC26A6Q9BXS9 759 aa16.77■□□□□ 0.28
CACNB1-206ENST00000539338 FKBP15Q5T1M5 1219 aa16.77■□□□□ 0.27
CACNB1-206ENST00000539338 NEMFO60524 1076 aa16.77■□□□□ 0.27
CACNB1-206ENST00000539338 ANAPC15P60006 121 aa16.77■□□□□ 0.27
CACNB1-206ENST00000539338 ENOX2Q16206 610 aaKnown RBP16.77■□□□□ 0.27
CACNB1-206ENST00000539338 ZGPATQ8N5A5 531 aaKnown RBP16.77■□□□□ 0.27
CACNB1-206ENST00000539338 NLRP3Q96P20 1036 aa16.77■□□□□ 0.27
CACNB1-206ENST00000539338 GSDMDP57764 484 aa16.76■□□□□ 0.27
CACNB1-206ENST00000539338 SMC5Q8IY18 1101 aa16.76■□□□□ 0.27
CACNB1-206ENST00000539338 KLF18A0A0U1RQI7 1052 aa16.76■□□□□ 0.27
CACNB1-206ENST00000539338 DNM1Q05193 864 aaKnown RBP16.76■□□□□ 0.27
CACNB1-206ENST00000539338 TAF3Q5VWG9 929 aa16.76■□□□□ 0.27
CACNB1-206ENST00000539338 ARHGEF12Q9NZN5 1544 aa16.76■□□□□ 0.27
CACNB1-206ENST00000539338 TMEM94Q12767 1356 aa16.76■□□□□ 0.27
CACNB1-206ENST00000539338 DNA2P51530 1060 aa16.76■□□□□ 0.27
CACNB1-206ENST00000539338 TTF1Q15361 905 aaPredicted RBP16.76■□□□□ 0.27
CACNB1-206ENST00000539338 CRACR2AQ9BSW2 395 aa16.76■□□□□ 0.27
CACNB1-206ENST00000539338 SLC4A8Q2Y0W8 1093 aa16.76■□□□□ 0.27
CACNB1-206ENST00000539338 CACNA2D4Q7Z3S7 1137 aa16.76■□□□□ 0.27
CACNB1-206ENST00000539338 GRM8O00222 908 aa16.75■□□□□ 0.27
CACNB1-206ENST00000539338 GNPATO15228 680 aa16.75■□□□□ 0.27
CACNB1-206ENST00000539338 PLEKHM2Q8IWE5 1019 aa16.75■□□□□ 0.27
CACNB1-206ENST00000539338 ZSCAN16Q9H4T2 348 aaPredicted RBP16.75■□□□□ 0.27
CACNB1-206ENST00000539338 ABCA5Q8WWZ7 1642 aa16.75■□□□□ 0.27
CACNB1-206ENST00000539338 ANO6Q4KMQ2 910 aa16.75■□□□□ 0.27
CACNB1-206ENST00000539338 ARHGAP27Q6ZUM4 889 aa16.75■□□□□ 0.27
CACNB1-206ENST00000539338 HOOK2Q96ED9 719 aa16.75■□□□□ 0.27
CACNB1-206ENST00000539338 PRIM1P49642 420 aaKnown RBP16.75■□□□□ 0.27
CACNB1-206ENST00000539338 LDHCP07864 332 aa16.75■□□□□ 0.27
CACNB1-206ENST00000539338 RAB3GAP1Q15042 981 aa16.75■□□□□ 0.27
CACNB1-206ENST00000539338 MFSD6Q6ZSS7 791 aa16.75■□□□□ 0.27
CACNB1-206ENST00000539338 UBA5Q9GZZ9 404 aa16.74■□□□□ 0.27
CACNB1-206ENST00000539338 BCS1LQ9Y276 419 aa16.74■□□□□ 0.27
CACNB1-206ENST00000539338 PCDH11XQ9BZA7 1347 aa16.74■□□□□ 0.27
CACNB1-206ENST00000539338 PCDH11YQ9BZA8 1340 aa16.74■□□□□ 0.27
CACNB1-206ENST00000539338 F13A1P00488 732 aa16.74■□□□□ 0.27
CACNB1-206ENST00000539338 KIF22Q14807 665 aa16.74■□□□□ 0.27
CACNB1-206ENST00000539338 DHX37Q8IY37 1157 aaKnown RBP16.74■□□□□ 0.27
CACNB1-206ENST00000539338 GBP3Q9H0R5 595 aa16.74■□□□□ 0.27
CACNB1-206ENST00000539338 CGNQ9P2M7 1197 aaKnown RBP16.74■□□□□ 0.27
CACNB1-206ENST00000539338 NMIQ13287 307 aaPredicted RBP16.74■□□□□ 0.27
CACNB1-206ENST00000539338 Q6ZUG5 572 aa16.74■□□□□ 0.27
CACNB1-206ENST00000539338 SNW1Q13573 536 aaKnown RBP16.74■□□□□ 0.27
CACNB1-206ENST00000539338 KSR2Q6VAB6 950 aa16.74■□□□□ 0.27
CACNB1-206ENST00000539338 POLR3GO15318 223 aaPredicted RBP16.73■□□□□ 0.27
CACNB1-206ENST00000539338 TNNI2P48788 182 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms