RNA–Protein interactions for RNA: ENST00000539080.1

CLIP1-211, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 4

Gene CLIP1, Length 560 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-211ENST00000539080 FLIIQ13045 1269 aa24.33■■□□□ 1.49
CLIP1-211ENST00000539080 JDP2Q8WYK2 163 aa24.33■■□□□ 1.49
CLIP1-211ENST00000539080 FZD9O00144 591 aa24.32■■□□□ 1.48
CLIP1-211ENST00000539080 RTL5Q5HYW3 569 aaPredicted RBP24.32■■□□□ 1.48
CLIP1-211ENST00000539080 G2E3Q7L622 706 aa24.32■■□□□ 1.48
CLIP1-211ENST00000539080 SUPT20HQ8NEM7 779 aa24.32■■□□□ 1.48
CLIP1-211ENST00000539080 LRRC37AA6NMS7 1700 aa24.32■■□□□ 1.48
CLIP1-211ENST00000539080 POTECB2RU33 542 aa24.31■■□□□ 1.48
CLIP1-211ENST00000539080 DDNO94850 711 aaPredicted RBP24.31■■□□□ 1.48
CLIP1-211ENST00000539080 RTFDC1Q9BY42 306 aaPredicted RBP24.31■■□□□ 1.48
CLIP1-211ENST00000539080 CDHR2Q9BYE9 1310 aa24.31■■□□□ 1.48
CLIP1-211ENST00000539080 IGKV5-2P06315 115 aa24.3■■□□□ 1.48
CLIP1-211ENST00000539080 L3MBTL3Q96JM7 780 aaPredicted RBP24.3■■□□□ 1.48
CLIP1-211ENST00000539080 TAF1P21675 1872 aa24.3■■□□□ 1.48
CLIP1-211ENST00000539080 SCN4AP35499 1836 aa24.29■■□□□ 1.48
CLIP1-211ENST00000539080 PDE8AO60658 829 aa24.29■■□□□ 1.48
CLIP1-211ENST00000539080 FKBP5Q13451 457 aaPredicted RBP24.29■■□□□ 1.48
CLIP1-211ENST00000539080 IQCA1LA6NCM1 817 aa24.28■■□□□ 1.48
CLIP1-211ENST00000539080 DPP8Q6V1X1 898 aaPredicted RBP24.28■■□□□ 1.48
CLIP1-211ENST00000539080 SLC51AQ86UW1 340 aa24.28■■□□□ 1.48
CLIP1-211ENST00000539080 LARGE2Q8N3Y3 721 aa24.28■■□□□ 1.48
CLIP1-211ENST00000539080 MPNDQ8N594 471 aa24.28■■□□□ 1.48
CLIP1-211ENST00000539080 SMC1BQ8NDV3 1235 aa24.28■■□□□ 1.48
CLIP1-211ENST00000539080 NEURL1BA8MQ27 555 aa24.27■■□□□ 1.48
CLIP1-211ENST00000539080 CCDC152Q4G0S7 254 aa24.27■■□□□ 1.48
CLIP1-211ENST00000539080 CELF1Q92879 486 aaKnown RBP24.27■■□□□ 1.48
CLIP1-211ENST00000539080 ZNF541Q9H0D2 1346 aa24.27■■□□□ 1.48
CLIP1-211ENST00000539080 COL4A5P29400 1685 aa24.27■■□□□ 1.48
CLIP1-211ENST00000539080 E9PSI1 815 aa24.26■■□□□ 1.47
CLIP1-211ENST00000539080 EIF6P56537 245 aaKnown RBP24.26■■□□□ 1.47
CLIP1-211ENST00000539080 GPC2Q8N158 579 aa24.26■■□□□ 1.47
CLIP1-211ENST00000539080 DNAAF4Q8WXU2 420 aa24.26■■□□□ 1.47
CLIP1-211ENST00000539080 PPIP5K2O43314 1243 aa24.25■■□□□ 1.47
CLIP1-211ENST00000539080 APLP1P51693 650 aa24.25■■□□□ 1.47
CLIP1-211ENST00000539080 CWF19L2Q2TBE0 894 aaKnown RBP24.25■■□□□ 1.47
CLIP1-211ENST00000539080 NIM1KQ8IY84 436 aa24.25■■□□□ 1.47
CLIP1-211ENST00000539080 RPS8P62241 208 aaKnown RBP24.24■■□□□ 1.47
CLIP1-211ENST00000539080 LINS1Q8NG48 757 aa24.24■■□□□ 1.47
CLIP1-211ENST00000539080 MYH3P11055 1940 aa24.23■■□□□ 1.47
CLIP1-211ENST00000539080 AOC3Q16853 763 aa24.23■■□□□ 1.47
CLIP1-211ENST00000539080 DUOX1Q9NRD9 1551 aa24.23■■□□□ 1.47
CLIP1-211ENST00000539080 COL4A1P02462 1669 aa24.22■■□□□ 1.47
CLIP1-211ENST00000539080 H7C1W4 665 aa24.22■■□□□ 1.47
CLIP1-211ENST00000539080 KIAA2012Q0VF49 1180 aa24.22■■□□□ 1.47
CLIP1-211ENST00000539080 GCKRQ14397 625 aa24.22■■□□□ 1.47
CLIP1-211ENST00000539080 JARID2Q92833 1246 aaPredicted RBP24.22■■□□□ 1.47
CLIP1-211ENST00000539080 CTSWP56202 376 aa24.21■■□□□ 1.47
CLIP1-211ENST00000539080 LTBP1Q14766 1721 aa24.21■■□□□ 1.47
CLIP1-211ENST00000539080 SLFN5Q08AF3 891 aa24.2■■□□□ 1.46
CLIP1-211ENST00000539080 UBE3BQ7Z3V4 1068 aa24.2■■□□□ 1.46
CLIP1-211ENST00000539080 SEC31BQ9NQW1 1179 aa24.2■■□□□ 1.46
CLIP1-211ENST00000539080 HACL1Q9UJ83 578 aa24.2■■□□□ 1.46
CLIP1-211ENST00000539080 ZNRF3Q9ULT6 936 aa24.2■■□□□ 1.46
CLIP1-211ENST00000539080 NSFL1CQ9UNZ2 370 aaKnown RBP24.2■■□□□ 1.46
CLIP1-211ENST00000539080 RTL9Q8NET4 1388 aa24.19■■□□□ 1.46
CLIP1-211ENST00000539080 PLA2G12BQ9BX93 195 aa24.19■■□□□ 1.46
CLIP1-211ENST00000539080 TAF1DQ9H5J8 278 aaPredicted RBP24.19■■□□□ 1.46
CLIP1-211ENST00000539080 TTLL11Q8NHH1 800 aa24.18■■□□□ 1.46
CLIP1-211ENST00000539080 GPSM2P81274 684 aa24.17■■□□□ 1.46
CLIP1-211ENST00000539080 BEND3Q5T5X7 828 aa24.17■■□□□ 1.46
CLIP1-211ENST00000539080 ANKRD18AQ8IVF6 992 aa24.17■■□□□ 1.46
CLIP1-211ENST00000539080 CDC5LQ99459 802 aaKnown RBP24.17■■□□□ 1.46
CLIP1-211ENST00000539080 PODXL2Q9NZ53 605 aa24.17■■□□□ 1.46
CLIP1-211ENST00000539080 CASP7P55210 303 aa24.16■■□□□ 1.46
CLIP1-211ENST00000539080 WASHC4Q2M389 1173 aa24.16■■□□□ 1.46
CLIP1-211ENST00000539080 CHADLQ6NUI6 762 aa24.16■■□□□ 1.46
CLIP1-211ENST00000539080 PNMA8AQ86V59 439 aaPredicted RBP24.16■■□□□ 1.46
CLIP1-211ENST00000539080 LDHDQ86WU2 507 aa24.16■■□□□ 1.46
CLIP1-211ENST00000539080 EYA3Q99504 573 aa24.16■■□□□ 1.46
CLIP1-211ENST00000539080 GJA3Q9Y6H8 435 aa24.16■■□□□ 1.46
CLIP1-211ENST00000539080 F6X3S4 739 aa24.15■■□□□ 1.46
CLIP1-211ENST00000539080 EPHX2P34913 555 aa24.15■■□□□ 1.46
CLIP1-211ENST00000539080 CCDC85AQ96PX6 553 aaPredicted RBP24.15■■□□□ 1.46
CLIP1-211ENST00000539080 ADAMTSL1Q8N6G6 1762 aa24.14■■□□□ 1.46
CLIP1-211ENST00000539080 LMOD1P29536 600 aaPredicted RBP24.14■■□□□ 1.45
CLIP1-211ENST00000539080 DIEXFQ68CQ4 756 aaKnown RBP24.14■■□□□ 1.45
CLIP1-211ENST00000539080 TRMT2AQ8IZ69 625 aaKnown RBP24.14■■□□□ 1.45
CLIP1-211ENST00000539080 POLLQ9UGP5 575 aa24.14■■□□□ 1.45
CLIP1-211ENST00000539080 C6orf229H3BNL8 230 aa24.13■■□□□ 1.45
CLIP1-211ENST00000539080 CXCL9Q07325 125 aa24.13■■□□□ 1.45
CLIP1-211ENST00000539080 TBC1D16Q8TBP0 767 aa24.13■■□□□ 1.45
CLIP1-211ENST00000539080 GREM2Q9H772 168 aa24.13■■□□□ 1.45
CLIP1-211ENST00000539080 ANKIB1Q9P2G1 1089 aa24.13■■□□□ 1.45
CLIP1-211ENST00000539080 POTEIP0CG38 1075 aa24.12■■□□□ 1.45
CLIP1-211ENST00000539080 POTEJP0CG39 1038 aa24.12■■□□□ 1.45
CLIP1-211ENST00000539080 SCNN1DP51172 638 aa24.12■■□□□ 1.45
CLIP1-211ENST00000539080 TNIP1Q15025 636 aa24.12■■□□□ 1.45
CLIP1-211ENST00000539080 CIAPIN1Q6FI81 312 aa24.12■■□□□ 1.45
CLIP1-211ENST00000539080 MRPL50Q8N5N7 158 aaKnown RBP24.12■■□□□ 1.45
CLIP1-211ENST00000539080 BSDC1Q9NW68 430 aaPredicted RBP24.12■■□□□ 1.45
CLIP1-211ENST00000539080 ALDH1L1O75891 902 aa24.11■■□□□ 1.45
CLIP1-211ENST00000539080 CSF1RP07333 972 aa24.11■■□□□ 1.45
CLIP1-211ENST00000539080 CDCA7LQ96GN5 454 aa24.11■■□□□ 1.45
CLIP1-211ENST00000539080 GGA1Q9UJY5 639 aa24.11■■□□□ 1.45
CLIP1-211ENST00000539080 PTPRCP08575 1304 aa24.1■■□□□ 1.45
CLIP1-211ENST00000539080 XDHP47989 1333 aa24.1■■□□□ 1.45
CLIP1-211ENST00000539080 CT47B1P0C2W7 299 aaPredicted RBP24.1■■□□□ 1.45
CLIP1-211ENST00000539080 ALDH1L2Q3SY69 923 aa24.1■■□□□ 1.45
CLIP1-211ENST00000539080 EAPPQ56P03 285 aaPredicted RBP24.1■■□□□ 1.45
CLIP1-211ENST00000539080 ZC3H12CQ9C0D7 883 aaKnown RBP24.1■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 75.3 ms