RNA–Protein interactions for RNA: ENST00000538708.5

PTPRB-204, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

TSL 1 (best) BASIC

Gene PTPRB, Length 5,839 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-204ENST00000538708 GGA1Q9UJY5 639 aa10.96□□□□□ -0.66
PTPRB-204ENST00000538708 PRIM1P49642 420 aaKnown RBP10.95□□□□□ -0.66
PTPRB-204ENST00000538708 AMPD3Q01432 767 aa10.95□□□□□ -0.66
PTPRB-204ENST00000538708 ZRSR2Q15696 482 aaKnown RBP10.95□□□□□ -0.66
PTPRB-204ENST00000538708 TRAK2O60296 914 aa10.95□□□□□ -0.66
PTPRB-204ENST00000538708 PRKG1Q13976 671 aa10.95□□□□□ -0.66
PTPRB-204ENST00000538708 NIM1KQ8IY84 436 aa10.95□□□□□ -0.66
PTPRB-204ENST00000538708 TAF4BQ92750 862 aa10.95□□□□□ -0.66
PTPRB-204ENST00000538708 ASXL1Q8IXJ9 1541 aa10.95□□□□□ -0.66
PTPRB-204ENST00000538708 KLHL10Q6JEL2 608 aa10.95□□□□□ -0.66
PTPRB-204ENST00000538708 ERMNQ8TAM6 284 aa10.95□□□□□ -0.66
PTPRB-204ENST00000538708 USP16Q9Y5T5 823 aa10.95□□□□□ -0.66
PTPRB-204ENST00000538708 CEP170Q5SW79 1584 aa10.95□□□□□ -0.66
PTPRB-204ENST00000538708 ALDH1L1O75891 902 aa10.95□□□□□ -0.66
PTPRB-204ENST00000538708 GBP2P32456 591 aaPredicted RBP10.95□□□□□ -0.66
PTPRB-204ENST00000538708 NCBP1Q09161 790 aaKnown RBP10.95□□□□□ -0.66
PTPRB-204ENST00000538708 MAGEB6Q8N7X4 407 aa10.95□□□□□ -0.66
PTPRB-204ENST00000538708 ESR2Q92731 530 aa10.95□□□□□ -0.66
PTPRB-204ENST00000538708 PUF60Q9UHX1 559 aaKnown RBP10.95□□□□□ -0.66
PTPRB-204ENST00000538708 TBCAO75347 108 aaKnown RBP10.94□□□□□ -0.66
PTPRB-204ENST00000538708 ARHGAP27Q6ZUM4 889 aa10.94□□□□□ -0.66
PTPRB-204ENST00000538708 CACNA2D4Q7Z3S7 1137 aa10.94□□□□□ -0.66
PTPRB-204ENST00000538708 SH2B1Q9NRF2 756 aaPredicted RBP10.94□□□□□ -0.66
PTPRB-204ENST00000538708 WDR70Q9NW82 654 aa10.94□□□□□ -0.66
PTPRB-204ENST00000538708 CALM1P0DP23 149 aa10.94□□□□□ -0.66
PTPRB-204ENST00000538708 CALM2P0DP24 149 aa10.94□□□□□ -0.66
PTPRB-204ENST00000538708 CALM3P0DP25 149 aa10.94□□□□□ -0.66
PTPRB-204ENST00000538708 PDIA4P13667 645 aaKnown RBP10.94□□□□□ -0.66
PTPRB-204ENST00000538708 TRIM27P14373 513 aa10.94□□□□□ -0.66
PTPRB-204ENST00000538708 FERMT3Q86UX7 667 aa10.94□□□□□ -0.66
PTPRB-204ENST00000538708 SAP30BPQ9UHR5 308 aaKnown RBP10.94□□□□□ -0.66
PTPRB-204ENST00000538708 IL16Q14005 1332 aa10.94□□□□□ -0.66
PTPRB-204ENST00000538708 ZFYP08048 801 aaPredicted RBP10.94□□□□□ -0.66
PTPRB-204ENST00000538708 CAMK4Q16566 473 aa10.94□□□□□ -0.66
PTPRB-204ENST00000538708 CNNM2Q9H8M5 875 aa10.94□□□□□ -0.66
PTPRB-204ENST00000538708 MCM9Q9NXL9 1143 aa10.94□□□□□ -0.66
PTPRB-204ENST00000538708 SLC9C2Q5TAH2 1124 aa10.94□□□□□ -0.66
PTPRB-204ENST00000538708 C11orf95C9JLR9 678 aaPredicted RBP10.94□□□□□ -0.66
PTPRB-204ENST00000538708 CETN1Q12798 172 aa10.94□□□□□ -0.66
PTPRB-204ENST00000538708 MIGA1Q8NAN2 632 aa10.94□□□□□ -0.66
PTPRB-204ENST00000538708 MAST1Q9Y2H9 1570 aa10.93□□□□□ -0.66
PTPRB-204ENST00000538708 TSPOAP1O95153 1857 aa10.93□□□□□ -0.66
PTPRB-204ENST00000538708 HMGN5P82970 282 aaKnown RBP10.93□□□□□ -0.66
PTPRB-204ENST00000538708 RAB3GAP1Q15042 981 aa10.93□□□□□ -0.66
PTPRB-204ENST00000538708 TSHZ3Q63HK5 1081 aa10.93□□□□□ -0.66
PTPRB-204ENST00000538708 EYA1Q99502 592 aa10.93□□□□□ -0.66
PTPRB-204ENST00000538708 SH2D4AQ9H788 454 aa10.93□□□□□ -0.66
PTPRB-204ENST00000538708 PARP10Q53GL7 1025 aa10.93□□□□□ -0.66
PTPRB-204ENST00000538708 TRPC5Q9UL62 973 aaPredicted RBP10.93□□□□□ -0.66
PTPRB-204ENST00000538708 NEK1Q96PY6 1258 aa10.93□□□□□ -0.66
PTPRB-204ENST00000538708 MCM5P33992 734 aa10.92□□□□□ -0.66
PTPRB-204ENST00000538708 NAPAP54920 295 aa10.92□□□□□ -0.66
PTPRB-204ENST00000538708 ENOX2Q16206 610 aaKnown RBP10.92□□□□□ -0.66
PTPRB-204ENST00000538708 MMRN2Q9H8L6 949 aa10.92□□□□□ -0.66
PTPRB-204ENST00000538708 GOLGA6L10A6NI86 522 aa10.92□□□□□ -0.66
PTPRB-204ENST00000538708 VPS36Q86VN1 386 aa10.92□□□□□ -0.66
PTPRB-204ENST00000538708 FAM177A1Q8N128 213 aaPredicted RBP10.92□□□□□ -0.66
PTPRB-204ENST00000538708 RRP36Q96EU6 259 aaKnown RBP10.92□□□□□ -0.66
PTPRB-204ENST00000538708 DENND2AQ9ULE3 1009 aa10.92□□□□□ -0.66
PTPRB-204ENST00000538708 NOD1Q9Y239 953 aa10.92□□□□□ -0.66
PTPRB-204ENST00000538708 ABCA5Q8WWZ7 1642 aa10.92□□□□□ -0.66
PTPRB-204ENST00000538708 NUP160Q12769 1436 aa10.92□□□□□ -0.66
PTPRB-204ENST00000538708 CCDC148Q8NFR7 591 aa10.92□□□□□ -0.66
PTPRB-204ENST00000538708 HOOK2Q96ED9 719 aa10.92□□□□□ -0.66
PTPRB-204ENST00000538708 LARP6Q9BRS8 491 aaKnown RBP10.92□□□□□ -0.66
PTPRB-204ENST00000538708 LRRC27Q9C0I9 530 aa10.92□□□□□ -0.66
PTPRB-204ENST00000538708 EPB41L2O43491 1005 aaKnown RBP10.92□□□□□ -0.66
PTPRB-204ENST00000538708 GNAT2P19087 354 aa10.92□□□□□ -0.66
PTPRB-204ENST00000538708 USP8P40818 1118 aa10.92□□□□□ -0.66
PTPRB-204ENST00000538708 DPY19L2Q6NUT2 758 aa10.92□□□□□ -0.66
PTPRB-204ENST00000538708 CCDC174Q6PII3 467 aa10.92□□□□□ -0.66
PTPRB-204ENST00000538708 RHPN1Q8TCX5 695 aa10.92□□□□□ -0.66
PTPRB-204ENST00000538708 IDEP14735 1019 aa10.92□□□□□ -0.66
PTPRB-204ENST00000538708 ALDH1B1P30837 517 aa10.92□□□□□ -0.66
PTPRB-204ENST00000538708 PDE6BP35913 854 aa10.92□□□□□ -0.66
PTPRB-204ENST00000538708 CCDC40Q4G0X9 1142 aa10.92□□□□□ -0.66
PTPRB-204ENST00000538708 TCERG1LQ5VWI1 586 aa10.92□□□□□ -0.66
PTPRB-204ENST00000538708 SPDYE3A6NKU9 549 aa10.91□□□□□ -0.66
PTPRB-204ENST00000538708 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.91□□□□□ -0.66
PTPRB-204ENST00000538708 PAG1Q9NWQ8 432 aa10.91□□□□□ -0.66
PTPRB-204ENST00000538708 POLKQ9UBT6 870 aa10.91□□□□□ -0.66
PTPRB-204ENST00000538708 SPA17Q15506 151 aa10.91□□□□□ -0.66
PTPRB-204ENST00000538708 CNNM3Q8NE01 707 aa10.91□□□□□ -0.66
PTPRB-204ENST00000538708 ZFYVE9O95405 1425 aa10.91□□□□□ -0.66
PTPRB-204ENST00000538708 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.91□□□□□ -0.66
PTPRB-204ENST00000538708 ZNF354CQ86Y25 554 aa10.91□□□□□ -0.66
PTPRB-204ENST00000538708 CCDC24Q8N4L8 307 aa10.91□□□□□ -0.66
PTPRB-204ENST00000538708 MAST3O60307 1309 aa10.91□□□□□ -0.66
PTPRB-204ENST00000538708 ZNF771Q7L3S4 317 aaPredicted RBP10.91□□□□□ -0.66
PTPRB-204ENST00000538708 HMG20BQ9P0W2 317 aa10.91□□□□□ -0.66
PTPRB-204ENST00000538708 CWF19L2Q2TBE0 894 aaKnown RBP10.9□□□□□ -0.66
PTPRB-204ENST00000538708 FLAD1Q8NFF5 587 aa10.9□□□□□ -0.66
PTPRB-204ENST00000538708 ZBTB21Q9ULJ3 1066 aa10.9□□□□□ -0.66
PTPRB-204ENST00000538708 PRC1O43663 620 aa10.9□□□□□ -0.66
PTPRB-204ENST00000538708 HCLS1P14317 486 aaPredicted RBP10.9□□□□□ -0.66
PTPRB-204ENST00000538708 GNAQP50148 359 aa10.9□□□□□ -0.66
PTPRB-204ENST00000538708 CFAP100Q494V2 611 aa10.9□□□□□ -0.66
PTPRB-204ENST00000538708 IQCEQ6IPM2 695 aa10.9□□□□□ -0.66
PTPRB-204ENST00000538708 IVNS1ABPQ9Y6Y0 642 aa10.9□□□□□ -0.66
PTPRB-204ENST00000538708 TAF12Q16514 161 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms