RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 PHLPP1O60346 1717 aa13.03□□□□□ -0.32
CLIP1-210ENST00000538120 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.03□□□□□ -0.32
CLIP1-210ENST00000538120 MRE11P49959 708 aa13.03□□□□□ -0.32
CLIP1-210ENST00000538120 GAS2L3Q86XJ1 694 aa13.03□□□□□ -0.32
CLIP1-210ENST00000538120 CNTROBQ8N137 903 aa13.03□□□□□ -0.32
CLIP1-210ENST00000538120 ZFP91Q96JP5 570 aaPredicted RBP13.03□□□□□ -0.32
CLIP1-210ENST00000538120 CCDC8Q9H0W5 538 aaPredicted RBP13.03□□□□□ -0.32
CLIP1-210ENST00000538120 CWC25Q9NXE8 425 aaPredicted RBP13.03□□□□□ -0.32
CLIP1-210ENST00000538120 TLR7Q9NYK1 1049 aaKnown RBP13.03□□□□□ -0.32
CLIP1-210ENST00000538120 LRP6O75581 1613 aa13.03□□□□□ -0.32
CLIP1-210ENST00000538120 ITGB4P16144 1822 aa13.03□□□□□ -0.32
CLIP1-210ENST00000538120 NAP1L5Q96NT1 182 aaPredicted RBP13.03□□□□□ -0.32
CLIP1-210ENST00000538120 TEX13AQ9BXU3 409 aaPredicted RBP13.03□□□□□ -0.32
CLIP1-210ENST00000538120 PALD1Q9ULE6 856 aa13.03□□□□□ -0.32
CLIP1-210ENST00000538120 SPATA31A1Q5TZJ5 1347 aa13.03□□□□□ -0.32
CLIP1-210ENST00000538120 DDX11L8A8MPP1 907 aa13.02□□□□□ -0.32
CLIP1-210ENST00000538120 CLCN1P35523 988 aa13.02□□□□□ -0.32
CLIP1-210ENST00000538120 CCDC191Q8NCU4 936 aa13.02□□□□□ -0.32
CLIP1-210ENST00000538120 IL17RAQ96F46 866 aa13.02□□□□□ -0.32
CLIP1-210ENST00000538120 ISCA1Q9BUE6 129 aa13.02□□□□□ -0.32
CLIP1-210ENST00000538120 ANO2Q9NQ90 1003 aa13.02□□□□□ -0.32
CLIP1-210ENST00000538120 TJP1Q07157 1748 aa13.02□□□□□ -0.33
CLIP1-210ENST00000538120 NRAPQ86VF7 1730 aa13.02□□□□□ -0.33
CLIP1-210ENST00000538120 SGSM2O43147 1006 aa13.02□□□□□ -0.33
CLIP1-210ENST00000538120 GABBR2O75899 941 aa13.02□□□□□ -0.33
CLIP1-210ENST00000538120 LMBR1LQ6UX01 489 aa13.02□□□□□ -0.33
CLIP1-210ENST00000538120 WNK3Q9BYP7 1800 aa13.01□□□□□ -0.33
CLIP1-210ENST00000538120 PDAP1Q13442 181 aaKnown RBP13.01□□□□□ -0.33
CLIP1-210ENST00000538120 GPATCH3Q96I76 525 aa13.01□□□□□ -0.33
CLIP1-210ENST00000538120 EPB41L2O43491 1005 aaKnown RBP13□□□□□ -0.33
CLIP1-210ENST00000538120 STARD3NLO95772 234 aa13□□□□□ -0.33
CLIP1-210ENST00000538120 CYP19A1P11511 503 aaPredicted RBP13□□□□□ -0.33
CLIP1-210ENST00000538120 PRIM1P49642 420 aaKnown RBP13□□□□□ -0.33
CLIP1-210ENST00000538120 TFCP2Q12800 502 aa13□□□□□ -0.33
CLIP1-210ENST00000538120 TCIRG1Q13488 830 aa13□□□□□ -0.33
CLIP1-210ENST00000538120 PIP4K2BP78356 416 aa13□□□□□ -0.33
CLIP1-210ENST00000538120 SP7Q8TDD2 431 aaPredicted RBP13□□□□□ -0.33
CLIP1-210ENST00000538120 CDCA7Q9BWT1 371 aaPredicted RBP13□□□□□ -0.33
CLIP1-210ENST00000538120 LSG1Q9H089 658 aaKnown RBP13□□□□□ -0.33
CLIP1-210ENST00000538120 THRAP3Q9Y2W1 955 aaKnown RBP13□□□□□ -0.33
CLIP1-210ENST00000538120 NUTM2BA6NNL0 878 aaPredicted RBP12.99□□□□□ -0.33
CLIP1-210ENST00000538120 NUTM2EB1AL46 878 aaPredicted RBP12.99□□□□□ -0.33
CLIP1-210ENST00000538120 ANAPC15P60006 121 aa12.99□□□□□ -0.33
CLIP1-210ENST00000538120 TRIM28Q13263 835 aaKnown RBP12.99□□□□□ -0.33
CLIP1-210ENST00000538120 RAB3GAP1Q15042 981 aa12.99□□□□□ -0.33
CLIP1-210ENST00000538120 NUTM2AQ8IVF1 878 aaPredicted RBP12.99□□□□□ -0.33
CLIP1-210ENST00000538120 SPATA31A5Q5VU36 1347 aa12.99□□□□□ -0.33
CLIP1-210ENST00000538120 SPATA31A7Q8IWB4 1347 aa12.99□□□□□ -0.33
CLIP1-210ENST00000538120 HSPA4P34932 840 aa12.99□□□□□ -0.33
CLIP1-210ENST00000538120 PSEN1P49768 467 aa12.99□□□□□ -0.33
CLIP1-210ENST00000538120 TNNI3KQ59H18 835 aa12.99□□□□□ -0.33
CLIP1-210ENST00000538120 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.99□□□□□ -0.33
CLIP1-210ENST00000538120 EVI5LQ96CN4 794 aa12.99□□□□□ -0.33
CLIP1-210ENST00000538120 FPGT-TNNI3KV9GXZ4 949 aa12.99□□□□□ -0.33
CLIP1-210ENST00000538120 MCCP23508 829 aa12.98□□□□□ -0.33
CLIP1-210ENST00000538120 CWC27Q6UX04 472 aaKnown RBP12.98□□□□□ -0.33
CLIP1-210ENST00000538120 ATG9AQ7Z3C6 839 aa12.98□□□□□ -0.33
CLIP1-210ENST00000538120 HS6ST3Q8IZP7 471 aa12.98□□□□□ -0.33
CLIP1-210ENST00000538120 DBNLQ9UJU6 430 aaKnown RBP12.98□□□□□ -0.33
CLIP1-210ENST00000538120 ZNF330Q9Y3S2 320 aaPredicted RBP12.98□□□□□ -0.33
CLIP1-210ENST00000538120 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.98□□□□□ -0.33
CLIP1-210ENST00000538120 SLIT2O94813 1529 aa12.98□□□□□ -0.33
CLIP1-210ENST00000538120 ST18O60284 1047 aa12.98□□□□□ -0.33
CLIP1-210ENST00000538120 TOM1O60784 492 aa12.98□□□□□ -0.33
CLIP1-210ENST00000538120 CLCN6P51797 869 aa12.98□□□□□ -0.33
CLIP1-210ENST00000538120 MARCH10Q8NA82 808 aaPredicted RBP12.98□□□□□ -0.33
CLIP1-210ENST00000538120 SYTL4Q96C24 671 aaPredicted RBP12.98□□□□□ -0.33
CLIP1-210ENST00000538120 BOLA2Q9H3K6 86 aa12.98□□□□□ -0.33
CLIP1-210ENST00000538120 MAP3K15Q6ZN16 1313 aa12.97□□□□□ -0.33
CLIP1-210ENST00000538120 RAD50Q92878 1312 aa12.97□□□□□ -0.33
CLIP1-210ENST00000538120 STK25O00506 426 aa12.97□□□□□ -0.33
CLIP1-210ENST00000538120 HSP90AA1P07900 732 aaKnown RBP12.97□□□□□ -0.33
CLIP1-210ENST00000538120 DDB1Q16531 1140 aa12.97□□□□□ -0.33
CLIP1-210ENST00000538120 HLFQ16534 295 aa12.97□□□□□ -0.33
CLIP1-210ENST00000538120 AK9Q5TCS8 1911 aa12.97□□□□□ -0.33
CLIP1-210ENST00000538120 ESPNB1AK53 854 aa12.97□□□□□ -0.33
CLIP1-210ENST00000538120 KIF6Q6ZMV9 814 aa12.97□□□□□ -0.33
CLIP1-210ENST00000538120 ZBTB1Q9Y2K1 713 aa12.97□□□□□ -0.33
CLIP1-210ENST00000538120 SSFA2P28290 1259 aa12.96□□□□□ -0.33
CLIP1-210ENST00000538120 NEK4P51957 841 aa12.96□□□□□ -0.33
CLIP1-210ENST00000538120 GIGYF2Q6Y7W6 1299 aaKnown RBP12.96□□□□□ -0.33
CLIP1-210ENST00000538120 DIAPH3Q9NSV4 1193 aa12.96□□□□□ -0.33
CLIP1-210ENST00000538120 CHMP3Q9Y3E7 222 aa12.96□□□□□ -0.33
CLIP1-210ENST00000538120 DOT1LQ8TEK3 1739 aa12.96□□□□□ -0.34
CLIP1-210ENST00000538120 ATP5JP18859 108 aa12.96□□□□□ -0.34
CLIP1-210ENST00000538120 BARGINQ6ZT62 677 aa12.96□□□□□ -0.34
CLIP1-210ENST00000538120 GBP4Q96PP9 640 aa12.96□□□□□ -0.34
CLIP1-210ENST00000538120 DBNDD2Q9BQY9 259 aa12.96□□□□□ -0.34
CLIP1-210ENST00000538120 PCCAP05165 728 aaPredicted RBP12.95□□□□□ -0.34
CLIP1-210ENST00000538120 PTH1RQ03431 593 aa12.95□□□□□ -0.34
CLIP1-210ENST00000538120 ZNF594Q96JF6 807 aaPredicted RBP12.95□□□□□ -0.34
CLIP1-210ENST00000538120 LRRC24Q50LG9 513 aa12.95□□□□□ -0.34
CLIP1-210ENST00000538120 FAM89AQ96GI7 184 aa12.95□□□□□ -0.34
CLIP1-210ENST00000538120 ACSBG1Q96GR2 724 aa12.95□□□□□ -0.34
CLIP1-210ENST00000538120 FAM227BQ96M60 508 aa12.95□□□□□ -0.34
CLIP1-210ENST00000538120 SNRKQ9NRH2 765 aa12.95□□□□□ -0.34
CLIP1-210ENST00000538120 SNX14Q9Y5W7 946 aa12.95□□□□□ -0.34
CLIP1-210ENST00000538120 NMIQ13287 307 aaPredicted RBP12.94□□□□□ -0.34
CLIP1-210ENST00000538120 RUFY2Q8WXA3 655 aa12.94□□□□□ -0.34
CLIP1-210ENST00000538120 EDC3Q96F86 508 aaKnown RBP12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms