RNA–Protein interactions for RNA: ENST00000537750.5

SYNE1-236, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 2,850 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-236ENST00000537750 SYT10Q6XYQ8 523 aa17.53■□□□□ 0.4
SYNE1-236ENST00000537750 CCAR1Q8IX12 1150 aaKnown RBP17.53■□□□□ 0.4
SYNE1-236ENST00000537750 CAVIN2O95810 425 aa17.53■□□□□ 0.4
SYNE1-236ENST00000537750 ANKRD1Q15327 319 aa17.53■□□□□ 0.4
SYNE1-236ENST00000537750 AOPEPQ8N6M6 819 aa17.53■□□□□ 0.4
SYNE1-236ENST00000537750 DNAAF4Q8WXU2 420 aa17.53■□□□□ 0.4
SYNE1-236ENST00000537750 CHPF2Q9P2E5 772 aa17.53■□□□□ 0.4
SYNE1-236ENST00000537750 SNW1Q13573 536 aaKnown RBP17.52■□□□□ 0.4
SYNE1-236ENST00000537750 CALCOCO1Q9P1Z2 691 aa17.52■□□□□ 0.4
SYNE1-236ENST00000537750 FHOD1Q9Y613 1164 aa17.52■□□□□ 0.4
SYNE1-236ENST00000537750 PXDNLA1KZ92 1463 aa17.52■□□□□ 0.4
SYNE1-236ENST00000537750 KDRP35968 1356 aa17.52■□□□□ 0.39
SYNE1-236ENST00000537750 CLCN6P51797 869 aa17.52■□□□□ 0.39
SYNE1-236ENST00000537750 BMS1Q14692 1282 aaKnown RBP17.52■□□□□ 0.39
SYNE1-236ENST00000537750 E4F1Q66K89 784 aaPredicted RBP17.52■□□□□ 0.39
SYNE1-236ENST00000537750 ZNF589Q86UQ0 364 aaPredicted RBP17.52■□□□□ 0.39
SYNE1-236ENST00000537750 BOLA2Q9H3K6 86 aa17.52■□□□□ 0.39
SYNE1-236ENST00000537750 AKAP12Q02952 1782 aa17.52■□□□□ 0.39
SYNE1-236ENST00000537750 SETD1AO15047 1707 aaKnown RBP17.51■□□□□ 0.39
SYNE1-236ENST00000537750 IGSF1Q8N6C5 1336 aa17.51■□□□□ 0.39
SYNE1-236ENST00000537750 PPFIA3O75145 1194 aa17.51■□□□□ 0.39
SYNE1-236ENST00000537750 H2AFXP16104 143 aaPredicted RBP17.51■□□□□ 0.39
SYNE1-236ENST00000537750 GORABQ5T7V8 394 aa17.51■□□□□ 0.39
SYNE1-236ENST00000537750 NBPF11Q86T75 865 aa17.51■□□□□ 0.39
SYNE1-236ENST00000537750 GPATCH3Q96I76 525 aa17.51■□□□□ 0.39
SYNE1-236ENST00000537750 HNRNPH2P55795 449 aaKnown RBP17.51■□□□□ 0.39
SYNE1-236ENST00000537750 TLR7Q9NYK1 1049 aaKnown RBP17.51■□□□□ 0.39
SYNE1-236ENST00000537750 ITSN1Q15811 1721 aa17.51■□□□□ 0.39
SYNE1-236ENST00000537750 NPHP4O75161 1426 aaPredicted RBP17.51■□□□□ 0.39
SYNE1-236ENST00000537750 CRYBG1Q9Y4K1 1723 aa17.5■□□□□ 0.39
SYNE1-236ENST00000537750 CYP2C19P33261 490 aa17.5■□□□□ 0.39
SYNE1-236ENST00000537750 RNF20Q5VTR2 975 aa17.5■□□□□ 0.39
SYNE1-236ENST00000537750 LTV1Q96GA3 475 aaPredicted RBP17.5■□□□□ 0.39
SYNE1-236ENST00000537750 FSD1Q9BTV5 496 aa17.5■□□□□ 0.39
SYNE1-236ENST00000537750 LRRC2Q9BYS8 371 aa17.5■□□□□ 0.39
SYNE1-236ENST00000537750 HTATSF1O43719 755 aaKnown RBP17.5■□□□□ 0.39
SYNE1-236ENST00000537750 ADD1P35611 737 aaKnown RBP17.5■□□□□ 0.39
SYNE1-236ENST00000537750 EAF2Q96CJ1 260 aaPredicted RBP17.5■□□□□ 0.39
SYNE1-236ENST00000537750 EDC3Q96F86 508 aaKnown RBP17.5■□□□□ 0.39
SYNE1-236ENST00000537750 PPP1R13BQ96KQ4 1090 aa17.5■□□□□ 0.39
SYNE1-236ENST00000537750 ADGRL3Q9HAR2 1447 aa17.49■□□□□ 0.39
SYNE1-236ENST00000537750 PNMA6AP0CW24 399 aaPredicted RBP17.49■□□□□ 0.39
SYNE1-236ENST00000537750 PLA2G4AP47712 749 aa17.49■□□□□ 0.39
SYNE1-236ENST00000537750 ARHGAP29Q52LW3 1261 aa17.49■□□□□ 0.39
SYNE1-236ENST00000537750 PLCD3Q8N3E9 789 aa17.49■□□□□ 0.39
SYNE1-236ENST00000537750 CFAP45Q9UL16 551 aa17.49■□□□□ 0.39
SYNE1-236ENST00000537750 GIGYF1O75420 1035 aaPredicted RBP17.49■□□□□ 0.39
SYNE1-236ENST00000537750 HSP90B1P14625 803 aaKnown RBP17.49■□□□□ 0.39
SYNE1-236ENST00000537750 L2HGDHQ9H9P8 463 aa17.49■□□□□ 0.39
SYNE1-236ENST00000537750 FLT4P35916 1363 aa17.49■□□□□ 0.39
SYNE1-236ENST00000537750 USP31Q70CQ4 1352 aa17.49■□□□□ 0.39
SYNE1-236ENST00000537750 SPATA31D1Q6ZQQ2 1576 aa17.48■□□□□ 0.39
SYNE1-236ENST00000537750 POLR3GO15318 223 aaPredicted RBP17.48■□□□□ 0.39
SYNE1-236ENST00000537750 TULP2O00295 520 aa17.48■□□□□ 0.39
SYNE1-236ENST00000537750 KCNQ3O43525 872 aa17.48■□□□□ 0.39
SYNE1-236ENST00000537750 ANO10Q9NW15 660 aa17.48■□□□□ 0.39
SYNE1-236ENST00000537750 C9orf78Q9NZ63 289 aaPredicted RBP17.48■□□□□ 0.39
SYNE1-236ENST00000537750 USP6P35125 1406 aa17.47■□□□□ 0.39
SYNE1-236ENST00000537750 KINO60870 393 aaKnown RBP17.47■□□□□ 0.39
SYNE1-236ENST00000537750 SASH1O94885 1247 aa17.47■□□□□ 0.39
SYNE1-236ENST00000537750 ARMCX5Q6P1M9 558 aa17.47■□□□□ 0.39
SYNE1-236ENST00000537750 CCDC73Q6ZRK6 1079 aa17.47■□□□□ 0.39
SYNE1-236ENST00000537750 USP28Q96RU2 1077 aa17.47■□□□□ 0.39
SYNE1-236ENST00000537750 CHGBP05060 677 aa17.47■□□□□ 0.39
SYNE1-236ENST00000537750 CCDC93Q567U6 631 aa17.47■□□□□ 0.39
SYNE1-236ENST00000537750 Q6ZUG5 572 aa17.47■□□□□ 0.39
SYNE1-236ENST00000537750 USHBP1Q8N6Y0 703 aa17.47■□□□□ 0.39
SYNE1-236ENST00000537750 SBNO1A3KN83 1393 aa17.46■□□□□ 0.39
SYNE1-236ENST00000537750 CTAGE5O15320 804 aa17.46■□□□□ 0.39
SYNE1-236ENST00000537750 TMC6Q7Z403 805 aa17.46■□□□□ 0.39
SYNE1-236ENST00000537750 SIL1Q9H173 461 aa17.46■□□□□ 0.39
SYNE1-236ENST00000537750 RCOR1Q9UKL0 485 aa17.46■□□□□ 0.39
SYNE1-236ENST00000537750 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP17.46■□□□□ 0.39
SYNE1-236ENST00000537750 KIF2AO00139 706 aaPredicted RBP17.46■□□□□ 0.39
SYNE1-236ENST00000537750 MLECQ14165 292 aa17.46■□□□□ 0.39
SYNE1-236ENST00000537750 CWF19L2Q2TBE0 894 aaKnown RBP17.46■□□□□ 0.39
SYNE1-236ENST00000537750 CEP57L1Q8IYX8 460 aa17.46■□□□□ 0.39
SYNE1-236ENST00000537750 FSIP1Q8NA03 581 aa17.46■□□□□ 0.39
SYNE1-236ENST00000537750 NEK11Q8NG66 645 aa17.46■□□□□ 0.39
SYNE1-236ENST00000537750 SIRT1Q96EB6 747 aa17.46■□□□□ 0.39
SYNE1-236ENST00000537750 FMNL2Q96PY5 1086 aa17.46■□□□□ 0.39
SYNE1-236ENST00000537750 XPO4Q9C0E2 1151 aaKnown RBP17.46■□□□□ 0.39
SYNE1-236ENST00000537750 ALDH8A1Q9H2A2 487 aaPredicted RBP17.46■□□□□ 0.39
SYNE1-236ENST00000537750 ZSCAN16Q9H4T2 348 aaPredicted RBP17.46■□□□□ 0.39
SYNE1-236ENST00000537750 ZKSCAN7Q9P0L1 754 aaPredicted RBP17.46■□□□□ 0.39
SYNE1-236ENST00000537750 ROBO2Q9HCK4 1378 aa17.46■□□□□ 0.39
SYNE1-236ENST00000537750 PLEKHG3A1L390 1219 aa17.46■□□□□ 0.38
SYNE1-236ENST00000537750 SMC2O95347 1197 aa17.46■□□□□ 0.38
SYNE1-236ENST00000537750 GSDMDP57764 484 aa17.46■□□□□ 0.38
SYNE1-236ENST00000537750 GUCY1B3Q02153 619 aa17.46■□□□□ 0.38
SYNE1-236ENST00000537750 ENGASEQ8NFI3 743 aa17.46■□□□□ 0.38
SYNE1-236ENST00000537750 RICTORQ6R327 1708 aa17.45■□□□□ 0.38
SYNE1-236ENST00000537750 HIP1O00291 1037 aa17.45■□□□□ 0.38
SYNE1-236ENST00000537750 SCRN1Q12765 414 aa17.45■□□□□ 0.38
SYNE1-236ENST00000537750 NUTM2GQ5VZR2 741 aa17.45■□□□□ 0.38
SYNE1-236ENST00000537750 OSBPL5Q9H0X9 879 aaPredicted RBP17.45■□□□□ 0.38
SYNE1-236ENST00000537750 KCND1Q9NSA2 647 aa17.45■□□□□ 0.38
SYNE1-236ENST00000537750 IFNKQ9P0W0 207 aa17.45■□□□□ 0.38
SYNE1-236ENST00000537750 CACNA1FO60840 1977 aa17.45■□□□□ 0.38
SYNE1-236ENST00000537750 SEC31AO94979 1220 aaKnown RBP17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms