RNA–Protein interactions for RNA: ENST00000537380.1

CIITA-203, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best)

Gene CIITA, Length 1,062 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-203ENST00000537380 FOXO4P98177 505 aa11.65□□□□□ -0.54
CIITA-203ENST00000537380 ANKRD45Q5TZF3 282 aa11.65□□□□□ -0.54
CIITA-203ENST00000537380 ZBTB47Q9UFB7 747 aaPredicted RBP11.65□□□□□ -0.54
CIITA-203ENST00000537380 ANKRD31Q8N7Z5 1873 aa11.65□□□□□ -0.54
CIITA-203ENST00000537380 KIF1BPQ96EK5 621 aa11.64□□□□□ -0.55
CIITA-203ENST00000537380 UTP14AQ9BVJ6 771 aaKnown RBP11.64□□□□□ -0.55
CIITA-203ENST00000537380 LRRCC1Q9C099 1032 aa11.64□□□□□ -0.55
CIITA-203ENST00000537380 NYXQ9GZU5 481 aa11.64□□□□□ -0.55
CIITA-203ENST00000537380 CARMIL3Q8ND23 1372 aa11.64□□□□□ -0.55
CIITA-203ENST00000537380 RTL9Q8NET4 1388 aa11.64□□□□□ -0.55
CIITA-203ENST00000537380 UBN2Q6ZU65 1347 aa11.63□□□□□ -0.55
CIITA-203ENST00000537380 SH3TC1Q8TE82 1336 aa11.63□□□□□ -0.55
CIITA-203ENST00000537380 PDE8AO60658 829 aa11.63□□□□□ -0.55
CIITA-203ENST00000537380 RFX5P48382 616 aaPredicted RBP11.63□□□□□ -0.55
CIITA-203ENST00000537380 TGFB2P61812 414 aa11.63□□□□□ -0.55
CIITA-203ENST00000537380 EPHA10Q5JZY3 1008 aa11.63□□□□□ -0.55
CIITA-203ENST00000537380 SLC10A5Q5PT55 438 aa11.63□□□□□ -0.55
CIITA-203ENST00000537380 TBC1D9BQ66K14 1250 aa11.63□□□□□ -0.55
CIITA-203ENST00000537380 OSBPL3Q9H4L5 887 aa11.63□□□□□ -0.55
CIITA-203ENST00000537380 TRMT112Q9UI30 125 aaKnown RBP11.63□□□□□ -0.55
CIITA-203ENST00000537380 SURF6O75683 361 aaKnown RBP11.62□□□□□ -0.55
CIITA-203ENST00000537380 CIAO1O76071 339 aa11.62□□□□□ -0.55
CIITA-203ENST00000537380 NTSR2O95665 410 aa11.62□□□□□ -0.55
CIITA-203ENST00000537380 LMBR1LQ6UX01 489 aa11.62□□□□□ -0.55
CIITA-203ENST00000537380 NIP7Q9Y221 180 aaKnown RBP eCLIP11.62□□□□□ -0.55
CIITA-203ENST00000537380 ARFGEF1Q9Y6D6 1849 aa11.62□□□□□ -0.55
CIITA-203ENST00000537380 MYH3P11055 1940 aa11.62□□□□□ -0.55
CIITA-203ENST00000537380 LAMB2P55268 1798 aa11.62□□□□□ -0.55
CIITA-203ENST00000537380 AOX1Q06278 1338 aa11.61□□□□□ -0.55
CIITA-203ENST00000537380 RIC1Q4ADV7 1423 aa11.61□□□□□ -0.55
CIITA-203ENST00000537380 COL11A2P13942 1736 aaPredicted RBP11.61□□□□□ -0.55
CIITA-203ENST00000537380 IRS4O14654 1257 aaPredicted RBP11.61□□□□□ -0.55
CIITA-203ENST00000537380 SERPINB2P05120 415 aa11.61□□□□□ -0.55
CIITA-203ENST00000537380 GPTP24298 496 aa11.61□□□□□ -0.55
CIITA-203ENST00000537380 PDE4AP27815 886 aa11.61□□□□□ -0.55
CIITA-203ENST00000537380 PTPN12Q05209 780 aaKnown RBP11.61□□□□□ -0.55
CIITA-203ENST00000537380 SUSD4Q5VX71 490 aa11.61□□□□□ -0.55
CIITA-203ENST00000537380 RHPN1Q8TCX5 695 aa11.61□□□□□ -0.55
CIITA-203ENST00000537380 FAM89AQ96GI7 184 aa11.61□□□□□ -0.55
CIITA-203ENST00000537380 SETDB2Q96T68 719 aa11.61□□□□□ -0.55
CIITA-203ENST00000537380 LNPKQ9C0E8 428 aa11.61□□□□□ -0.55
CIITA-203ENST00000537380 STAP2Q9UGK3 403 aa11.61□□□□□ -0.55
CIITA-203ENST00000537380 CTSWP56202 376 aa11.6□□□□□ -0.55
CIITA-203ENST00000537380 G3BP1Q13283 466 aaKnown RBP eCLIP11.6□□□□□ -0.55
CIITA-203ENST00000537380 BMP2KLQ5H9B9 411 aa11.6□□□□□ -0.55
CIITA-203ENST00000537380 TTLL11Q8NHH1 800 aa11.6□□□□□ -0.55
CIITA-203ENST00000537380 GPR108Q9NPR9 543 aa11.6□□□□□ -0.55
CIITA-203ENST00000537380 EXOC6BQ9Y2D4 811 aa11.6□□□□□ -0.55
CIITA-203ENST00000537380 SALL3Q9BXA9 1300 aa11.6□□□□□ -0.55
CIITA-203ENST00000537380 YBX3P16989 372 aaKnown RBP eCLIP11.59□□□□□ -0.55
CIITA-203ENST00000537380 KCNA3P22001 575 aa11.59□□□□□ -0.55
CIITA-203ENST00000537380 CCDC57Q2TAC2 916 aa11.59□□□□□ -0.55
CIITA-203ENST00000537380 PRR5LQ6MZQ0 368 aa11.59□□□□□ -0.55
CIITA-203ENST00000537380 TPTE2Q6XPS3 522 aa11.59□□□□□ -0.55
CIITA-203ENST00000537380 BICDL1Q6ZP65 573 aa11.59□□□□□ -0.55
CIITA-203ENST00000537380 PLEKHM2Q8IWE5 1019 aa11.59□□□□□ -0.55
CIITA-203ENST00000537380 EIF5BO60841 1220 aaKnown RBP11.58□□□□□ -0.56
CIITA-203ENST00000537380 DPEP1P16444 411 aa11.58□□□□□ -0.56
CIITA-203ENST00000537380 IL15P40933 162 aaPredicted RBP11.58□□□□□ -0.56
CIITA-203ENST00000537380 RGS3P49796 1198 aa11.58□□□□□ -0.56
CIITA-203ENST00000537380 C1QTNF8P60827 252 aa11.58□□□□□ -0.56
CIITA-203ENST00000537380 IFIT5Q13325 482 aaKnown RBP11.58□□□□□ -0.56
CIITA-203ENST00000537380 SF3B3Q15393 1217 aaKnown RBP11.58□□□□□ -0.56
CIITA-203ENST00000537380 CLASRPQ8N2M8 674 aaKnown RBP11.58□□□□□ -0.56
CIITA-203ENST00000537380 TNRC6CQ9HCJ0 1690 aaKnown RBP11.57□□□□□ -0.56
CIITA-203ENST00000537380 A0A0G2JLW4 131 aa11.57□□□□□ -0.56
CIITA-203ENST00000537380 FAM161AQ3B820 660 aa11.57□□□□□ -0.56
CIITA-203ENST00000537380 CCDC152Q4G0S7 254 aa11.57□□□□□ -0.56
CIITA-203ENST00000537380 TICAM2Q86XR7 235 aa11.57□□□□□ -0.56
CIITA-203ENST00000537380 CNBD1Q8NA66 436 aa11.57□□□□□ -0.56
CIITA-203ENST00000537380 GPBP1L1Q9HC44 474 aaPredicted RBP11.57□□□□□ -0.56
CIITA-203ENST00000537380 WWC3Q9ULE0 1092 aa11.57□□□□□ -0.56
CIITA-203ENST00000537380 DDX60Q8IY21 1712 aaKnown RBP11.57□□□□□ -0.56
CIITA-203ENST00000537380 TTC41PQ6P2S7 1318 aa11.57□□□□□ -0.56
CIITA-203ENST00000537380 ANKRD18BA2A2Z9 1011 aa11.56□□□□□ -0.56
CIITA-203ENST00000537380 EYA2O00167 538 aa11.56□□□□□ -0.56
CIITA-203ENST00000537380 SASH1O94885 1247 aa11.56□□□□□ -0.56
CIITA-203ENST00000537380 PDE1AP54750 535 aa11.56□□□□□ -0.56
CIITA-203ENST00000537380 OS9Q13438 667 aaPredicted RBP11.56□□□□□ -0.56
CIITA-203ENST00000537380 JARID2Q92833 1246 aaPredicted RBP11.56□□□□□ -0.56
CIITA-203ENST00000537380 BRIP1Q9BX63 1249 aa11.56□□□□□ -0.56
CIITA-203ENST00000537380 BACH2Q9BYV9 841 aa11.56□□□□□ -0.56
CIITA-203ENST00000537380 PA2G4Q9UQ80 394 aaKnown RBP11.56□□□□□ -0.56
CIITA-203ENST00000537380 MX1P20591 662 aa11.55□□□□□ -0.56
CIITA-203ENST00000537380 ITGA6P23229 1130 aa11.55□□□□□ -0.56
CIITA-203ENST00000537380 CHRNA5P30532 468 aa11.55□□□□□ -0.56
CIITA-203ENST00000537380 ATG9AQ7Z3C6 839 aa11.55□□□□□ -0.56
CIITA-203ENST00000537380 NBPF5PQ86XG9 351 aaPredicted RBP11.55□□□□□ -0.56
CIITA-203ENST00000537380 SYNE4Q8N205 404 aa11.55□□□□□ -0.56
CIITA-203ENST00000537380 GPATCH3Q96I76 525 aa11.55□□□□□ -0.56
CIITA-203ENST00000537380 BCS1LQ9Y276 419 aa11.55□□□□□ -0.56
CIITA-203ENST00000537380 KLRG2A4D1S0 409 aaPredicted RBP11.54□□□□□ -0.56
CIITA-203ENST00000537380 PDE6BP35913 854 aa11.54□□□□□ -0.56
CIITA-203ENST00000537380 ST5P78524 1137 aa11.54□□□□□ -0.56
CIITA-203ENST00000537380 RTL5Q5HYW3 569 aaPredicted RBP11.54□□□□□ -0.56
CIITA-203ENST00000537380 TTC22Q5TAA0 569 aa11.54□□□□□ -0.56
CIITA-203ENST00000537380 ZNF526Q8TF50 670 aaPredicted RBP11.54□□□□□ -0.56
CIITA-203ENST00000537380 NLRP3Q96P20 1036 aa11.54□□□□□ -0.56
CIITA-203ENST00000537380 CDC5LQ99459 802 aaKnown RBP11.54□□□□□ -0.56
CIITA-203ENST00000537380 GREM2Q9H772 168 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms