RNA–Protein interactions for RNA: ENST00000535997.6

CHMP1A-202, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2 BASIC

Gene CHMP1A, Length 2,295 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-202ENST00000535997 UBE3BQ7Z3V4 1068 aa19.08■□□□□ 0.65
CHMP1A-202ENST00000535997 RFX7Q2KHR2 1363 aa19.08■□□□□ 0.64
CHMP1A-202ENST00000535997 PTMAP06454 111 aaKnown RBP19.08■□□□□ 0.64
CHMP1A-202ENST00000535997 PLBD2Q8NHP8 589 aa19.08■□□□□ 0.64
CHMP1A-202ENST00000535997 A0A087WZG4 1122 aa19.07■□□□□ 0.64
CHMP1A-202ENST00000535997 CABP4P57796 275 aa19.07■□□□□ 0.64
CHMP1A-202ENST00000535997 KRT85P78386 507 aa19.07■□□□□ 0.64
CHMP1A-202ENST00000535997 TOB2Q14106 344 aaPredicted RBP19.07■□□□□ 0.64
CHMP1A-202ENST00000535997 ELP1O95163 1332 aa19.07■□□□□ 0.64
CHMP1A-202ENST00000535997 FUCA2Q9BTY2 467 aa19.07■□□□□ 0.64
CHMP1A-202ENST00000535997 COL18A1P39060 1754 aa19.07■□□□□ 0.64
CHMP1A-202ENST00000535997 RRP9O43818 475 aaKnown RBP19.06■□□□□ 0.64
CHMP1A-202ENST00000535997 HCLS1P14317 486 aaPredicted RBP19.06■□□□□ 0.64
CHMP1A-202ENST00000535997 COL9A3Q14050 684 aaPredicted RBP19.06■□□□□ 0.64
CHMP1A-202ENST00000535997 HAUS7Q99871 368 aa19.06■□□□□ 0.64
CHMP1A-202ENST00000535997 CASP7P55210 303 aa19.05■□□□□ 0.64
CHMP1A-202ENST00000535997 JARID2Q92833 1246 aaPredicted RBP19.05■□□□□ 0.64
CHMP1A-202ENST00000535997 EDC3Q96F86 508 aaKnown RBP19.05■□□□□ 0.64
CHMP1A-202ENST00000535997 ATP5J2-PTCD1G3V325 749 aa19.05■□□□□ 0.64
CHMP1A-202ENST00000535997 PTCD1O75127 700 aaKnown RBP19.05■□□□□ 0.64
CHMP1A-202ENST00000535997 TICAM2Q86XR7 235 aa19.05■□□□□ 0.64
CHMP1A-202ENST00000535997 TAF6LQ9Y6J9 622 aa19.05■□□□□ 0.64
CHMP1A-202ENST00000535997 PIP4K2AP48426 406 aaPredicted RBP19.04■□□□□ 0.64
CHMP1A-202ENST00000535997 MCMDC2Q4G0Z9 681 aa19.04■□□□□ 0.64
CHMP1A-202ENST00000535997 NEK1Q96PY6 1258 aa19.04■□□□□ 0.64
CHMP1A-202ENST00000535997 U3KPZ7 1027 aaPredicted RBP19.04■□□□□ 0.64
CHMP1A-202ENST00000535997 DTNBO60941 627 aa19.04■□□□□ 0.64
CHMP1A-202ENST00000535997 KDM4AO75164 1064 aa19.04■□□□□ 0.64
CHMP1A-202ENST00000535997 TPRNQ4KMQ1 711 aa19.04■□□□□ 0.64
CHMP1A-202ENST00000535997 GIMAP6Q6P9H5 292 aa19.04■□□□□ 0.64
CHMP1A-202ENST00000535997 CDC37L1Q7L3B6 337 aa19.04■□□□□ 0.64
CHMP1A-202ENST00000535997 TCEANC2Q96MN5 208 aa19.04■□□□□ 0.64
CHMP1A-202ENST00000535997 SCAND2PQ9GZW5 306 aaPredicted RBP19.04■□□□□ 0.64
CHMP1A-202ENST00000535997 USP25Q9UHP3 1055 aa19.04■□□□□ 0.64
CHMP1A-202ENST00000535997 HSP90AA2PQ14568 343 aaPredicted RBP19.03■□□□□ 0.64
CHMP1A-202ENST00000535997 CABLES1Q8TDN4 633 aa19.03■□□□□ 0.64
CHMP1A-202ENST00000535997 DDX17Q92841 729 aaKnown RBP19.03■□□□□ 0.64
CHMP1A-202ENST00000535997 H7C1W4 665 aa19.03■□□□□ 0.64
CHMP1A-202ENST00000535997 ADCY5O95622 1261 aa19.03■□□□□ 0.64
CHMP1A-202ENST00000535997 TTC6Q86TZ1 520 aa19.03■□□□□ 0.64
CHMP1A-202ENST00000535997 DBNDD2Q9BQY9 259 aa19.03■□□□□ 0.64
CHMP1A-202ENST00000535997 DCCP43146 1447 aa19.02■□□□□ 0.64
CHMP1A-202ENST00000535997 CHRNA2Q15822 529 aa19.02■□□□□ 0.64
CHMP1A-202ENST00000535997 LMBR1LQ6UX01 489 aa19.02■□□□□ 0.64
CHMP1A-202ENST00000535997 R3HCC1Q9Y3T6 440 aaKnown RBP19.02■□□□□ 0.64
CHMP1A-202ENST00000535997 AFDNP55196 1824 aaKnown RBP19.02■□□□□ 0.63
CHMP1A-202ENST00000535997 CCDC192P0DO97 292 aa19.02■□□□□ 0.63
CHMP1A-202ENST00000535997 FERMT3Q86UX7 667 aa19.02■□□□□ 0.63
CHMP1A-202ENST00000535997 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP19.02■□□□□ 0.635e-7■■□□□ 12.9
CHMP1A-202ENST00000535997 TMEM94Q12767 1356 aa19.02■□□□□ 0.63
CHMP1A-202ENST00000535997 KIAA2012Q0VF49 1180 aa19.01■□□□□ 0.63
CHMP1A-202ENST00000535997 KBTBD3Q8NAB2 608 aa19.01■□□□□ 0.63
CHMP1A-202ENST00000535997 DNAJC2Q99543 621 aaKnown RBP19.01■□□□□ 0.63
CHMP1A-202ENST00000535997 GPR108Q9NPR9 543 aa19.01■□□□□ 0.63
CHMP1A-202ENST00000535997 CPDO75976 1380 aa19■□□□□ 0.63
CHMP1A-202ENST00000535997 FOXO4P98177 505 aa19■□□□□ 0.63
CHMP1A-202ENST00000535997 CADPS2Q86UW7 1296 aa19■□□□□ 0.63
CHMP1A-202ENST00000535997 GTF3C6Q969F1 213 aa19■□□□□ 0.63
CHMP1A-202ENST00000535997 ARFGEF2Q9Y6D5 1785 aa19■□□□□ 0.63
CHMP1A-202ENST00000535997 PKD1L3Q7Z443 1732 aa19■□□□□ 0.63
CHMP1A-202ENST00000535997 HMGB1P09429 215 aaKnown RBP19■□□□□ 0.63
CHMP1A-202ENST00000535997 ZNF609O15014 1411 aa18.99■□□□□ 0.63
CHMP1A-202ENST00000535997 TNS3Q68CZ2 1445 aa18.99■□□□□ 0.63
CHMP1A-202ENST00000535997 CYP21A2P08686 494 aa18.99■□□□□ 0.63
CHMP1A-202ENST00000535997 NDUFB9Q9Y6M9 179 aa18.99■□□□□ 0.63
CHMP1A-202ENST00000535997 SH3TC1Q8TE82 1336 aa18.99■□□□□ 0.63
CHMP1A-202ENST00000535997 NBPF26B4DH59 902 aa18.99■□□□□ 0.63
CHMP1A-202ENST00000535997 STK3Q13188 491 aa18.99■□□□□ 0.63
CHMP1A-202ENST00000535997 NBPF14Q5TI25 921 aa18.99■□□□□ 0.63
CHMP1A-202ENST00000535997 NBPF10Q6P3W6 841 aaKnown RBP18.99■□□□□ 0.63
CHMP1A-202ENST00000535997 NBPF15Q8N660 670 aa18.99■□□□□ 0.63
CHMP1A-202ENST00000535997 SPATA31A3Q5VYP0 1347 aa18.98■□□□□ 0.63
CHMP1A-202ENST00000535997 Q6ZUG5 572 aa18.98■□□□□ 0.63
CHMP1A-202ENST00000535997 DDX46Q7L014 1031 aaKnown RBP18.98■□□□□ 0.63
CHMP1A-202ENST00000535997 ATG9AQ7Z3C6 839 aa18.98■□□□□ 0.63
CHMP1A-202ENST00000535997 SPATA32Q96LK8 384 aa18.98■□□□□ 0.63
CHMP1A-202ENST00000535997 SEC62Q99442 399 aaKnown RBP18.98■□□□□ 0.63
CHMP1A-202ENST00000535997 HELLSQ9NRZ9 838 aa18.98■□□□□ 0.63
CHMP1A-202ENST00000535997 CWC25Q9NXE8 425 aaPredicted RBP18.98■□□□□ 0.63
CHMP1A-202ENST00000535997 GOLGA6L4A6NEF3 574 aa18.98■□□□□ 0.63
CHMP1A-202ENST00000535997 MAP3K11Q16584 847 aa18.98■□□□□ 0.63
CHMP1A-202ENST00000535997 FAM173BQ6P4H8 233 aa18.98■□□□□ 0.63
CHMP1A-202ENST00000535997 IL15P40933 162 aaPredicted RBP18.97■□□□□ 0.63
CHMP1A-202ENST00000535997 CCDC129Q6ZRS4 1044 aa18.97■□□□□ 0.63
CHMP1A-202ENST00000535997 NUP62CLQ9H1M0 184 aa18.97■□□□□ 0.63
CHMP1A-202ENST00000535997 ERVV-2B6SEH9 535 aa18.97■□□□□ 0.63
CHMP1A-202ENST00000535997 NEUROD6Q96NK8 337 aa18.97■□□□□ 0.63
CHMP1A-202ENST00000535997 LLPHQ9BRT6 129 aaKnown RBP18.97■□□□□ 0.63
CHMP1A-202ENST00000535997 ATG3Q9NT62 314 aa18.97■□□□□ 0.63
CHMP1A-202ENST00000535997 PALLDQ8WX93 1383 aa18.96■□□□□ 0.63
CHMP1A-202ENST00000535997 LEO1Q8WVC0 666 aaPredicted RBP18.96■□□□□ 0.63
CHMP1A-202ENST00000535997 PIBF1Q8WXW3 757 aa18.96■□□□□ 0.63
CHMP1A-202ENST00000535997 ZSCAN16Q9H4T2 348 aaPredicted RBP18.96■□□□□ 0.63
CHMP1A-202ENST00000535997 PAG1Q9NWQ8 432 aa18.96■□□□□ 0.63
CHMP1A-202ENST00000535997 CHMP3Q9Y3E7 222 aa18.96■□□□□ 0.63
CHMP1A-202ENST00000535997 LIG1P18858 919 aa18.95■□□□□ 0.62
CHMP1A-202ENST00000535997 DHX32Q7L7V1 743 aaKnown RBP18.95■□□□□ 0.62
CHMP1A-202ENST00000535997 CCDC191Q8NCU4 936 aa18.95■□□□□ 0.62
CHMP1A-202ENST00000535997 DSCC1Q9BVC3 393 aa18.95■□□□□ 0.62
CHMP1A-202ENST00000535997 TFIP11Q9UBB9 837 aaKnown RBP18.95■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms