RNA–Protein interactions for RNA: ENST00000535042.1

TMEM258-202, Transcript of transmembrane protein 258, humanhuman

TSL 3

Gene TMEM258, Length 921 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM258-202ENST00000535042 CNKSR1Q969H4 720 aa16.56■□□□□ 0.24
TMEM258-202ENST00000535042 RBM17Q96I25 401 aaKnown RBP16.56■□□□□ 0.24
TMEM258-202ENST00000535042 CRAMP1Q96RY5 1269 aa16.56■□□□□ 0.24
TMEM258-202ENST00000535042 MEIS3Q99687 375 aa16.56■□□□□ 0.24
TMEM258-202ENST00000535042 CSF1RP07333 972 aa16.55■□□□□ 0.24
TMEM258-202ENST00000535042 HSP90B1P14625 803 aaKnown RBP16.55■□□□□ 0.24
TMEM258-202ENST00000535042 GPR162Q16538 588 aa16.55■□□□□ 0.24
TMEM258-202ENST00000535042 C20orf194Q5TEA3 1177 aa16.55■□□□□ 0.24
TMEM258-202ENST00000535042 PRPF40BQ6NWY9 871 aaKnown RBP16.55■□□□□ 0.24
TMEM258-202ENST00000535042 FTSJ3Q8IY81 847 aaKnown RBP16.55■□□□□ 0.24
TMEM258-202ENST00000535042 SEC31BQ9NQW1 1179 aa16.55■□□□□ 0.24
TMEM258-202ENST00000535042 DLEC1Q9Y238 1755 aa16.55■□□□□ 0.24
TMEM258-202ENST00000535042 LAMB2P55268 1798 aa16.54■□□□□ 0.24
TMEM258-202ENST00000535042 COL4A1P02462 1669 aa16.54■□□□□ 0.24
TMEM258-202ENST00000535042 ALDH1B1P30837 517 aa16.54■□□□□ 0.24
TMEM258-202ENST00000535042 DDX46Q7L014 1031 aaKnown RBP16.54■□□□□ 0.24
TMEM258-202ENST00000535042 C7orf43Q8WVR3 580 aa16.54■□□□□ 0.24
TMEM258-202ENST00000535042 CELF1Q92879 486 aaKnown RBP16.54■□□□□ 0.24
TMEM258-202ENST00000535042 ZNF219Q9P2Y4 722 aaPredicted RBP16.54■□□□□ 0.24
TMEM258-202ENST00000535042 BRCA1P38398 1863 aaKnown RBP16.54■□□□□ 0.24
TMEM258-202ENST00000535042 CCDC152Q4G0S7 254 aa16.53■□□□□ 0.24
TMEM258-202ENST00000535042 OLFM4Q6UX06 510 aa16.53■□□□□ 0.24
TMEM258-202ENST00000535042 ANKRD44Q8N8A2 993 aa16.53■□□□□ 0.24
TMEM258-202ENST00000535042 GREM2Q9H772 168 aa16.53■□□□□ 0.24
TMEM258-202ENST00000535042 C21orf2O43822 256 aa16.52■□□□□ 0.24
TMEM258-202ENST00000535042 UBTFL1P0CB47 393 aaPredicted RBP16.52■□□□□ 0.24
TMEM258-202ENST00000535042 RRP1P56182 461 aaKnown RBP16.52■□□□□ 0.24
TMEM258-202ENST00000535042 GRAPQ13588 217 aa16.52■□□□□ 0.24
TMEM258-202ENST00000535042 FAM161AQ3B820 660 aa16.52■□□□□ 0.24
TMEM258-202ENST00000535042 LMBR1LQ6UX01 489 aa16.52■□□□□ 0.24
TMEM258-202ENST00000535042 ITPRIPQ8IWB1 547 aa16.52■□□□□ 0.24
TMEM258-202ENST00000535042 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.52■□□□□ 0.24
TMEM258-202ENST00000535042 GRAPLQ8TC17 118 aaPredicted RBP16.52■□□□□ 0.24
TMEM258-202ENST00000535042 BICC1Q9H694 974 aaKnown RBP16.52■□□□□ 0.24
TMEM258-202ENST00000535042 ZBTB7BO15156 539 aaPredicted RBP16.51■□□□□ 0.23
TMEM258-202ENST00000535042 MS4A1P11836 297 aa16.51■□□□□ 0.23
TMEM258-202ENST00000535042 PDE3AQ14432 1141 aa16.51■□□□□ 0.23
TMEM258-202ENST00000535042 RABL6Q3YEC7 729 aaPredicted RBP16.51■□□□□ 0.23
TMEM258-202ENST00000535042 COG6Q9Y2V7 657 aa16.51■□□□□ 0.23
TMEM258-202ENST00000535042 SLX4Q8IY92 1834 aa16.51■□□□□ 0.23
TMEM258-202ENST00000535042 RTL9Q8NET4 1388 aa16.51■□□□□ 0.23
TMEM258-202ENST00000535042 PPEF1O14829 653 aaPredicted RBP16.5■□□□□ 0.23
TMEM258-202ENST00000535042 BBOX1O75936 387 aa16.5■□□□□ 0.23
TMEM258-202ENST00000535042 LRRFIP2Q9Y608 721 aaKnown RBP16.5■□□□□ 0.23
TMEM258-202ENST00000535042 GNAI3P08754 354 aa16.49■□□□□ 0.23
TMEM258-202ENST00000535042 ITGA6P23229 1130 aa16.49■□□□□ 0.23
TMEM258-202ENST00000535042 RPS8P62241 208 aaKnown RBP16.49■□□□□ 0.23
TMEM258-202ENST00000535042 MVPQ14764 893 aaKnown RBP16.49■□□□□ 0.23
TMEM258-202ENST00000535042 CHMP3Q9Y3E7 222 aa16.49■□□□□ 0.23
TMEM258-202ENST00000535042 GRIN3BO60391 1043 aa16.48■□□□□ 0.23
TMEM258-202ENST00000535042 ARHGAP27Q6ZUM4 889 aa16.48■□□□□ 0.23
TMEM258-202ENST00000535042 ATP6V0A2Q9Y487 856 aa16.48■□□□□ 0.23
TMEM258-202ENST00000535042 SP8Q8IXZ3 490 aa16.47■□□□□ 0.23
TMEM258-202ENST00000535042 SUPT16HQ9Y5B9 1047 aaKnown RBP16.47■□□□□ 0.23
TMEM258-202ENST00000535042 TAF1P21675 1872 aa16.47■□□□□ 0.23
TMEM258-202ENST00000535042 SNED1Q8TER0 1413 aa16.46■□□□□ 0.23
TMEM258-202ENST00000535042 ANKRD18BA2A2Z9 1011 aa16.46■□□□□ 0.23
TMEM258-202ENST00000535042 DCAF8L1A6NGE4 600 aa16.46■□□□□ 0.23
TMEM258-202ENST00000535042 NFKBIEO00221 500 aa16.46■□□□□ 0.23
TMEM258-202ENST00000535042 GNAI2P04899 355 aa16.46■□□□□ 0.23
TMEM258-202ENST00000535042 IFIT5Q13325 482 aaKnown RBP16.46■□□□□ 0.23
TMEM258-202ENST00000535042 ANKRD18AQ8IVF6 992 aa16.46■□□□□ 0.23
TMEM258-202ENST00000535042 ZNF594Q96JF6 807 aaPredicted RBP16.46■□□□□ 0.23
TMEM258-202ENST00000535042 CDC5LQ99459 802 aaKnown RBP16.46■□□□□ 0.23
TMEM258-202ENST00000535042 C1orf115Q9H7X2 142 aa16.46■□□□□ 0.23
TMEM258-202ENST00000535042 RFX5P48382 616 aaPredicted RBP16.45■□□□□ 0.22
TMEM258-202ENST00000535042 PRELPP51888 382 aa16.45■□□□□ 0.22
TMEM258-202ENST00000535042 RASSF7Q02833 373 aa16.45■□□□□ 0.22
TMEM258-202ENST00000535042 CCDC57Q2TAC2 916 aa16.45■□□□□ 0.22
TMEM258-202ENST00000535042 CCDC93Q567U6 631 aa16.45■□□□□ 0.22
TMEM258-202ENST00000535042 DDX19BQ9UMR2 479 aa16.45■□□□□ 0.22
TMEM258-202ENST00000535042 HDAC5Q9UQL6 1122 aa16.45■□□□□ 0.22
TMEM258-202ENST00000535042 CACNA1SQ13698 1873 aa16.45■□□□□ 0.22
TMEM258-202ENST00000535042 ARFGEF1Q9Y6D6 1849 aa16.45■□□□□ 0.22
TMEM258-202ENST00000535042 CC2D2BQ6DHV5 1058 aa16.44■□□□□ 0.22
TMEM258-202ENST00000535042 TMC4Q7Z404 712 aa16.44■□□□□ 0.22
TMEM258-202ENST00000535042 KLHDC4Q8TBB5 520 aa16.44■□□□□ 0.22
TMEM258-202ENST00000535042 BSDC1Q9NW68 430 aaPredicted RBP16.44■□□□□ 0.22
TMEM258-202ENST00000535042 MYH3P11055 1940 aa16.44■□□□□ 0.22
TMEM258-202ENST00000535042 IGHMBP2P38935 993 aaKnown RBP16.43■□□□□ 0.22
TMEM258-202ENST00000535042 GPSM2P81274 684 aa16.43■□□□□ 0.22
TMEM258-202ENST00000535042 SOGA3Q5TF21 947 aa16.43■□□□□ 0.22
TMEM258-202ENST00000535042 ZBTB40Q9NUA8 1239 aa16.43■□□□□ 0.22
TMEM258-202ENST00000535042 MTX1Q13505 466 aa16.42■□□□□ 0.22
TMEM258-202ENST00000535042 RTKN2Q8IZC4 609 aa16.42■□□□□ 0.22
TMEM258-202ENST00000535042 CRBNQ96SW2 442 aa16.42■□□□□ 0.22
TMEM258-202ENST00000535042 PUS3Q9BZE2 481 aaKnown RBP16.42■□□□□ 0.22
TMEM258-202ENST00000535042 MINPP1Q9UNW1 487 aa16.42■□□□□ 0.22
TMEM258-202ENST00000535042 PNMA6EA0A0J9YXQ4 647 aa16.41■□□□□ 0.22
TMEM258-202ENST00000535042 FKBP4Q02790 459 aaKnown RBP eCLIP16.41■□□□□ 0.22
TMEM258-202ENST00000535042 PTPN12Q05209 780 aaKnown RBP16.41■□□□□ 0.22
TMEM258-202ENST00000535042 TAF7LQ5H9L4 462 aa16.41■□□□□ 0.22
TMEM258-202ENST00000535042 MPNDQ8N594 471 aa16.41■□□□□ 0.22
TMEM258-202ENST00000535042 MPHOSPH8Q99549 860 aa16.41■□□□□ 0.22
TMEM258-202ENST00000535042 TAOK3Q9H2K8 898 aa16.41■□□□□ 0.22
TMEM258-202ENST00000535042 LTBP3Q9NS15 1303 aa16.41■□□□□ 0.22
TMEM258-202ENST00000535042 WTIPA6NIX2 430 aaPredicted RBP16.4■□□□□ 0.22
TMEM258-202ENST00000535042 SRGAP3O43295 1099 aa16.4■□□□□ 0.22
TMEM258-202ENST00000535042 ATP8B2P98198 1209 aa16.4■□□□□ 0.22
TMEM258-202ENST00000535042 LRRC24Q50LG9 513 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms