RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 STARD3NLO95772 234 aa8.91□□□□□ -0.98
CD44-237ENST00000534082 PSMD1Q99460 953 aa8.91□□□□□ -0.98
CD44-237ENST00000534082 ADARB2Q9NS39 739 aaKnown RBP8.91□□□□□ -0.98
CD44-237ENST00000534082 UBR2Q8IWV8 1755 aa8.91□□□□□ -0.98
CD44-237ENST00000534082 TRPA1O75762 1119 aa8.9□□□□□ -0.98
CD44-237ENST00000534082 CAMTA2O94983 1202 aa8.9□□□□□ -0.98
CD44-237ENST00000534082 TNNT2P45379 298 aaPredicted RBP8.9□□□□□ -0.98
CD44-237ENST00000534082 HUNKP57058 714 aa8.9□□□□□ -0.98
CD44-237ENST00000534082 FAM155AB1AL88 458 aaPredicted RBP8.89□□□□□ -0.99
CD44-237ENST00000534082 DLL1O00548 723 aa8.89□□□□□ -0.99
CD44-237ENST00000534082 NBPF5PQ86XG9 351 aaPredicted RBP8.89□□□□□ -0.99
CD44-237ENST00000534082 LARGE2Q8N3Y3 721 aa8.89□□□□□ -0.99
CD44-237ENST00000534082 MARVELD3Q96A59 401 aa8.89□□□□□ -0.99
CD44-237ENST00000534082 TMEM121BQ9BXQ6 578 aaPredicted RBP8.89□□□□□ -0.99
CD44-237ENST00000534082 RNF186Q9NXI6 227 aa8.89□□□□□ -0.99
CD44-237ENST00000534082 GPRC5DQ9NZD1 345 aa8.89□□□□□ -0.99
CD44-237ENST00000534082 BRCA2P51587 3418 aa8.89□□□□□ -0.99
CD44-237ENST00000534082 KLRG2A4D1S0 409 aaPredicted RBP8.88□□□□□ -0.99
CD44-237ENST00000534082 IL6STP40189 918 aaPredicted RBP8.88□□□□□ -0.99
CD44-237ENST00000534082 KIF23Q02241 960 aaPredicted RBP8.88□□□□□ -0.99
CD44-237ENST00000534082 MFRPQ9BY79 579 aa8.88□□□□□ -0.99
CD44-237ENST00000534082 LGR6Q9HBX8 967 aa8.88□□□□□ -0.99
CD44-237ENST00000534082 HTTP42858 3142 aa8.87□□□□□ -0.99
CD44-237ENST00000534082 CUL9Q8IWT3 2517 aa8.87□□□□□ -0.99
CD44-237ENST00000534082 RNMTO43148 476 aaKnown RBP8.87□□□□□ -0.99
CD44-237ENST00000534082 PKN2Q16513 984 aaKnown RBP8.87□□□□□ -0.99
CD44-237ENST00000534082 SULT6B1Q6IMI4 303 aa8.87□□□□□ -0.99
CD44-237ENST00000534082 RGMBQ6NW40 437 aa8.87□□□□□ -0.99
CD44-237ENST00000534082 CDC37L1Q7L3B6 337 aa8.87□□□□□ -0.99
CD44-237ENST00000534082 NPM2Q86SE8 214 aaKnown RBP8.87□□□□□ -0.99
CD44-237ENST00000534082 NIM1KQ8IY84 436 aa8.87□□□□□ -0.99
CD44-237ENST00000534082 FBXO22Q8NEZ5 403 aa8.87□□□□□ -0.99
CD44-237ENST00000534082 PGAP2Q9UHJ9 254 aa8.87□□□□□ -0.99
CD44-237ENST00000534082 A0A0C4DFX4 3053 aa8.87□□□□□ -0.99
CD44-237ENST00000534082 ALDH1B1P30837 517 aa8.86□□□□□ -0.99
CD44-237ENST00000534082 CDCA8Q53HL2 280 aa8.86□□□□□ -0.99
CD44-237ENST00000534082 DZIP3Q86Y13 1208 aaKnown RBP8.86□□□□□ -0.99
CD44-237ENST00000534082 TTC5Q8N0Z6 440 aa8.86□□□□□ -0.99
CD44-237ENST00000534082 ZC3H15Q8WU90 426 aaKnown RBP8.86□□□□□ -0.99
CD44-237ENST00000534082 CCDC102AQ96A19 550 aa8.86□□□□□ -0.99
CD44-237ENST00000534082 NPC1L1Q9UHC9 1359 aa8.86□□□□□ -0.99
CD44-237ENST00000534082 HEG1Q9ULI3 1381 aa8.86□□□□□ -0.99
CD44-237ENST00000534082 GMPSP49915 693 aaPredicted RBP8.85□□□□□ -0.99
CD44-237ENST00000534082 ZNF157P51786 506 aaPredicted RBP8.85□□□□□ -0.99
CD44-237ENST00000534082 CC2D2BQ6DHV5 1058 aa8.85□□□□□ -0.99
CD44-237ENST00000534082 CDAN1Q8IWY9 1227 aa8.85□□□□□ -0.99
CD44-237ENST00000534082 TRPM4Q8TD43 1214 aa8.85□□□□□ -0.99
CD44-237ENST00000534082 HDAC9Q9UKV0 1011 aa8.85□□□□□ -0.99
CD44-237ENST00000534082 CENPFP49454 3210 aa8.85□□□□□ -0.99
CD44-237ENST00000534082 CDHR2Q9BYE9 1310 aa8.84□□□□□ -0.99
CD44-237ENST00000534082 AKAP11Q9UKA4 1901 aa8.84□□□□□ -0.99
CD44-237ENST00000534082 PPIP5K2O43314 1243 aa8.84□□□□□ -0.99
CD44-237ENST00000534082 A1BGP04217 495 aa8.84□□□□□ -0.99
CD44-237ENST00000534082 SLC10A3P09131 477 aa8.84□□□□□ -0.99
CD44-237ENST00000534082 HIRAP54198 1017 aaPredicted RBP8.84□□□□□ -0.99
CD44-237ENST00000534082 DLK2Q6UY11 383 aa8.84□□□□□ -0.99
CD44-237ENST00000534082 TPTE2Q6XPS3 522 aa8.84□□□□□ -0.99
CD44-237ENST00000534082 USP48Q86UV5 1035 aa8.84□□□□□ -0.99
CD44-237ENST00000534082 SLC51AQ86UW1 340 aa8.84□□□□□ -0.99
CD44-237ENST00000534082 ZNF710Q8N1W2 664 aa8.84□□□□□ -0.99
CD44-237ENST00000534082 ZNF496Q96IT1 587 aaPredicted RBP8.84□□□□□ -0.99
CD44-237ENST00000534082 CSRNP1Q96S65 589 aa8.84□□□□□ -0.99
CD44-237ENST00000534082 TEX13AQ9BXU3 409 aaPredicted RBP8.84□□□□□ -0.99
CD44-237ENST00000534082 GBA2Q9HCG7 927 aaPredicted RBP8.84□□□□□ -0.99
CD44-237ENST00000534082 ZNF652Q9Y2D9 606 aa8.84□□□□□ -0.99
CD44-237ENST00000534082 ABCC12Q96J65 1359 aa8.84□□□□□ -0.99
CD44-237ENST00000534082 FAM177BA6PVY3 158 aa8.83□□□□□ -1
CD44-237ENST00000534082 EMP3P54852 163 aa8.83□□□□□ -1
CD44-237ENST00000534082 CXCL9Q07325 125 aa8.83□□□□□ -1
CD44-237ENST00000534082 AOC3Q16853 763 aa8.83□□□□□ -1
CD44-237ENST00000534082 FBXO46Q6PJ61 603 aaPredicted RBP8.83□□□□□ -1
CD44-237ENST00000534082 CLEC4GQ6UXB4 293 aa8.83□□□□□ -1
CD44-237ENST00000534082 TMEM92Q6UXU6 159 aa8.83□□□□□ -1
CD44-237ENST00000534082 C2orf69Q8N8R5 385 aa8.83□□□□□ -1
CD44-237ENST00000534082 ZNF296Q8WUU4 475 aaPredicted RBP8.83□□□□□ -1
CD44-237ENST00000534082 NIP7Q9Y221 180 aaKnown RBP eCLIP8.83□□□□□ -1
CD44-237ENST00000534082 TRIOBPQ9H2D6 2365 aa8.83□□□□□ -1
CD44-237ENST00000534082 RANBP2P49792 3224 aaKnown RBP8.82□□□□□ -1
CD44-237ENST00000534082 COL6A3P12111 3177 aa8.82□□□□□ -1
CD44-237ENST00000534082 RIC1Q4ADV7 1423 aa8.82□□□□□ -1
CD44-237ENST00000534082 CRY2Q49AN0 593 aa8.82□□□□□ -1
CD44-237ENST00000534082 GRIPAP1Q4V328 841 aa8.82□□□□□ -1
CD44-237ENST00000534082 SLC17A8Q8NDX2 589 aa8.82□□□□□ -1
CD44-237ENST00000534082 BCL2L13Q9BXK5 485 aa8.82□□□□□ -1
CD44-237ENST00000534082 ZNRF3Q9ULT6 936 aa8.82□□□□□ -1
CD44-237ENST00000534082 SHTN1A0MZ66 631 aa8.81□□□□□ -1
CD44-237ENST00000534082 ADM5C9JUS6 153 aa8.81□□□□□ -1
CD44-237ENST00000534082 PPEF1O14829 653 aaPredicted RBP8.81□□□□□ -1
CD44-237ENST00000534082 HOXB3P14651 431 aaPredicted RBP8.81□□□□□ -1
CD44-237ENST00000534082 PIP4K2AP48426 406 aaPredicted RBP8.81□□□□□ -1
CD44-237ENST00000534082 ZNF790Q6PG37 636 aa8.81□□□□□ -1
CD44-237ENST00000534082 KRT26Q7Z3Y9 468 aa8.81□□□□□ -1
CD44-237ENST00000534082 TCERG1O14776 1098 aaKnown RBP8.8□□□□□ -1
CD44-237ENST00000534082 GTF2E1P29083 439 aaPredicted RBP8.8□□□□□ -1
CD44-237ENST00000534082 IL13P35225 146 aa8.8□□□□□ -1
CD44-237ENST00000534082 DOK7Q18PE1 504 aa8.8□□□□□ -1
CD44-237ENST00000534082 RASAL3Q86YV0 1011 aa8.8□□□□□ -1
CD44-237ENST00000534082 RPGRQ92834 1020 aaKnown RBP8.8□□□□□ -1
CD44-237ENST00000534082 FMNL2Q96PY5 1086 aa8.8□□□□□ -1
CD44-237ENST00000534082 FAM205CA6NFA0 338 aa8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms