RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 RARSP54136 660 aaKnown RBP16.52■□□□□ 0.24
VPS28-216ENST00000533806 FKBP4Q02790 459 aaKnown RBP eCLIP16.52■□□□□ 0.24
VPS28-216ENST00000533806 GRIPAP1Q4V328 841 aa16.52■□□□□ 0.24
VPS28-216ENST00000533806 DDX46Q7L014 1031 aaKnown RBP16.52■□□□□ 0.24
VPS28-216ENST00000533806 PSMD1Q99460 953 aa16.52■□□□□ 0.24
VPS28-216ENST00000533806 PLA2G12BQ9BX93 195 aa16.52■□□□□ 0.24
VPS28-216ENST00000533806 BCL2L13Q9BXK5 485 aa16.52■□□□□ 0.24
VPS28-216ENST00000533806 SBF1O95248 1867 aa16.51■□□□□ 0.23
VPS28-216ENST00000533806 SP8Q8IXZ3 490 aa16.51■□□□□ 0.23
VPS28-216ENST00000533806 TTLL11Q8NHH1 800 aa16.51■□□□□ 0.23
VPS28-216ENST00000533806 ZC3H4Q9UPT8 1303 aaKnown RBP16.5■□□□□ 0.23
VPS28-216ENST00000533806 COL4A1P02462 1669 aa16.5■□□□□ 0.23
VPS28-216ENST00000533806 ALDH1L1O75891 902 aa16.5■□□□□ 0.23
VPS28-216ENST00000533806 UBE3BQ7Z3V4 1068 aa16.5■□□□□ 0.23
VPS28-216ENST00000533806 CELF1Q92879 486 aaKnown RBP16.5■□□□□ 0.23
VPS28-216ENST00000533806 SMC4Q9NTJ3 1288 aa16.5■□□□□ 0.23
VPS28-216ENST00000533806 CSF1RP07333 972 aa16.49■□□□□ 0.23
VPS28-216ENST00000533806 CTSWP56202 376 aa16.49■□□□□ 0.23
VPS28-216ENST00000533806 TMC4Q7Z404 712 aa16.49■□□□□ 0.23
VPS28-216ENST00000533806 SRCIN1Q9C0H9 1055 aa16.49■□□□□ 0.23
VPS28-216ENST00000533806 SEC31BQ9NQW1 1179 aa16.49■□□□□ 0.23
VPS28-216ENST00000533806 RTL9Q8NET4 1388 aa16.49■□□□□ 0.23
VPS28-216ENST00000533806 RPS8P62241 208 aaKnown RBP16.48■□□□□ 0.23
VPS28-216ENST00000533806 CCDC152Q4G0S7 254 aa16.48■□□□□ 0.23
VPS28-216ENST00000533806 RTFDC1Q9BY42 306 aaPredicted RBP16.48■□□□□ 0.23
VPS28-216ENST00000533806 CACNA1SQ13698 1873 aa16.48■□□□□ 0.23
VPS28-216ENST00000533806 UTYO14607 1347 aa16.47■□□□□ 0.23
VPS28-216ENST00000533806 GRM8O00222 908 aa16.47■□□□□ 0.23
VPS28-216ENST00000533806 FOXO4P98177 505 aa16.47■□□□□ 0.23
VPS28-216ENST00000533806 SLC4A10Q6U841 1118 aa16.47■□□□□ 0.23
VPS28-216ENST00000533806 ZNF277Q9NRM2 450 aaPredicted RBP16.47■□□□□ 0.23
VPS28-216ENST00000533806 NOB1Q9ULX3 412 aaKnown RBP16.47■□□□□ 0.23
VPS28-216ENST00000533806 ARHGAP45Q92619 1136 aa16.46■□□□□ 0.23
VPS28-216ENST00000533806 GREM2Q9H772 168 aa16.46■□□□□ 0.23
VPS28-216ENST00000533806 IARSP41252 1262 aaKnown RBP16.45■□□□□ 0.22
VPS28-216ENST00000533806 KAZALD1Q96I82 304 aa16.45■□□□□ 0.22
VPS28-216ENST00000533806 CCDC85AQ96PX6 553 aaPredicted RBP16.45■□□□□ 0.22
VPS28-216ENST00000533806 VPS33BQ9H267 617 aa16.45■□□□□ 0.22
VPS28-216ENST00000533806 GPBP1L1Q9HC44 474 aaPredicted RBP16.45■□□□□ 0.22
VPS28-216ENST00000533806 TAF1P21675 1872 aa16.44■□□□□ 0.22
VPS28-216ENST00000533806 GLTPD2A6NH11 291 aa16.44■□□□□ 0.22
VPS28-216ENST00000533806 NBPF7P0C2Y1 421 aaPredicted RBP16.44■□□□□ 0.22
VPS28-216ENST00000533806 EPHA10Q5JZY3 1008 aa16.44■□□□□ 0.22
VPS28-216ENST00000533806 MPNDQ8N594 471 aa16.44■□□□□ 0.22
VPS28-216ENST00000533806 USP44Q9H0E7 712 aa16.44■□□□□ 0.22
VPS28-216ENST00000533806 LRRC37AA6NMS7 1700 aa16.44■□□□□ 0.22
VPS28-216ENST00000533806 COL4A5P29400 1685 aa16.43■□□□□ 0.22
VPS28-216ENST00000533806 FZD9O00144 591 aa16.43■□□□□ 0.22
VPS28-216ENST00000533806 BCAR3O75815 825 aa16.43■□□□□ 0.22
VPS28-216ENST00000533806 DPP8Q6V1X1 898 aaPredicted RBP16.43■□□□□ 0.22
VPS28-216ENST00000533806 ZNF526Q8TF50 670 aaPredicted RBP16.43■□□□□ 0.22
VPS28-216ENST00000533806 TMX4Q9H1E5 349 aaPredicted RBP16.43■□□□□ 0.22
VPS28-216ENST00000533806 PODXL2Q9NZ53 605 aa16.43■□□□□ 0.22
VPS28-216ENST00000533806 C9orf78Q9NZ63 289 aaPredicted RBP16.43■□□□□ 0.22
VPS28-216ENST00000533806 DUOX1Q9NRD9 1551 aa16.43■□□□□ 0.22
VPS28-216ENST00000533806 KIF3CO14782 793 aa16.42■□□□□ 0.22
VPS28-216ENST00000533806 GPSM2P81274 684 aa16.42■□□□□ 0.22
VPS28-216ENST00000533806 API5Q9BZZ5 524 aaKnown RBP16.42■□□□□ 0.22
VPS28-216ENST00000533806 NMRK2Q9NPI5 230 aa16.42■□□□□ 0.22
VPS28-216ENST00000533806 BSDC1Q9NW68 430 aaPredicted RBP16.42■□□□□ 0.22
VPS28-216ENST00000533806 KIF16BQ96L93 1317 aa16.42■□□□□ 0.22
VPS28-216ENST00000533806 POTECB2RU33 542 aa16.41■□□□□ 0.22
VPS28-216ENST00000533806 ITGA6P23229 1130 aa16.41■□□□□ 0.22
VPS28-216ENST00000533806 ANKRD18AQ8IVF6 992 aa16.41■□□□□ 0.22
VPS28-216ENST00000533806 SUPT20HQ8NEM7 779 aa16.41■□□□□ 0.22
VPS28-216ENST00000533806 SUCLG2Q96I99 432 aa16.41■□□□□ 0.22
VPS28-216ENST00000533806 CDC5LQ99459 802 aaKnown RBP16.41■□□□□ 0.22
VPS28-216ENST00000533806 POLLQ9UGP5 575 aa16.41■□□□□ 0.22
VPS28-216ENST00000533806 KDM2BQ8NHM5 1336 aa16.41■□□□□ 0.22
VPS28-216ENST00000533806 DICER1Q9UPY3 1922 aaKnown RBP16.41■□□□□ 0.22
VPS28-216ENST00000533806 LTBP1Q14766 1721 aa16.4■□□□□ 0.22
VPS28-216ENST00000533806 CCT4P50991 539 aaKnown RBP16.4■□□□□ 0.22
VPS28-216ENST00000533806 KIAA2012Q0VF49 1180 aa16.4■□□□□ 0.22
VPS28-216ENST00000533806 FAM161AQ3B820 660 aa16.4■□□□□ 0.22
VPS28-216ENST00000533806 LMBR1LQ6UX01 489 aa16.4■□□□□ 0.22
VPS28-216ENST00000533806 NSFL1CQ9UNZ2 370 aaKnown RBP16.4■□□□□ 0.22
VPS28-216ENST00000533806 TIAM2Q8IVF5 1701 aa16.39■□□□□ 0.21
VPS28-216ENST00000533806 TRIM27P14373 513 aa16.39■□□□□ 0.21
VPS28-216ENST00000533806 AOC3Q16853 763 aa16.39■□□□□ 0.21
VPS28-216ENST00000533806 RABL6Q3YEC7 729 aaPredicted RBP16.39■□□□□ 0.21
VPS28-216ENST00000533806 INTS3Q68E01 1043 aaKnown RBP16.39■□□□□ 0.21
VPS28-216ENST00000533806 DPY19L2Q6NUT2 758 aa16.39■□□□□ 0.21
VPS28-216ENST00000533806 LARGE2Q8N3Y3 721 aa16.39■□□□□ 0.21
VPS28-216ENST00000533806 TBC1D16Q8TBP0 767 aa16.39■□□□□ 0.21
VPS28-216ENST00000533806 MINPP1Q9UNW1 487 aa16.39■□□□□ 0.21
VPS28-216ENST00000533806 CCDC88AQ3V6T2 1871 aa16.39■□□□□ 0.21
VPS28-216ENST00000533806 ZNF541Q9H0D2 1346 aa16.39■□□□□ 0.21
VPS28-216ENST00000533806 IPO8O15397 1037 aaKnown RBP16.38■□□□□ 0.21
VPS28-216ENST00000533806 PPIP5K2O43314 1243 aa16.38■□□□□ 0.21
VPS28-216ENST00000533806 DDNO94850 711 aaPredicted RBP16.38■□□□□ 0.21
VPS28-216ENST00000533806 ANKRD44Q8N8A2 993 aa16.38■□□□□ 0.21
VPS28-216ENST00000533806 JDP2Q8WYK2 163 aa16.38■□□□□ 0.21
VPS28-216ENST00000533806 L3MBTL3Q96JM7 780 aaPredicted RBP16.38■□□□□ 0.21
VPS28-216ENST00000533806 RRAGCQ9HB90 399 aa16.38■□□□□ 0.21
VPS28-216ENST00000533806 ATF7IPQ6VMQ6 1270 aa16.37■□□□□ 0.21
VPS28-216ENST00000533806 BICC1Q9H694 974 aaKnown RBP16.37■□□□□ 0.21
VPS28-216ENST00000533806 TNNQ9UQP3 1299 aa16.37■□□□□ 0.21
VPS28-216ENST00000533806 ANKRD18BA2A2Z9 1011 aa16.36■□□□□ 0.21
VPS28-216ENST00000533806 WTIPA6NIX2 430 aaPredicted RBP16.36■□□□□ 0.21
VPS28-216ENST00000533806 IFIT5Q13325 482 aaKnown RBP16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms