RNA–Protein interactions for RNA: ENST00000533523.5

CHMP4A-207, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best)

Gene CHMP4A, Length 1,266 nt, Biotype nonsense mediated decay.

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-207ENST00000533523 AIMP1Q12904 312 aaKnown RBP20.58■□□□□ 0.89
CHMP4A-207ENST00000533523 USP50Q70EL3 339 aaPredicted RBP20.58■□□□□ 0.89
CHMP4A-207ENST00000533523 HTTP42858 3142 aa20.57■□□□□ 0.88
CHMP4A-207ENST00000533523 DPP8Q6V1X1 898 aaPredicted RBP20.57■□□□□ 0.88
CHMP4A-207ENST00000533523 SUPT20HQ8NEM7 779 aa20.57■□□□□ 0.88
CHMP4A-207ENST00000533523 MYBBP1AQ9BQG0 1328 aaKnown RBP20.56■□□□□ 0.88
CHMP4A-207ENST00000533523 HCLS1P14317 486 aaPredicted RBP20.56■□□□□ 0.88
CHMP4A-207ENST00000533523 HSP90AB3PQ58FF7 597 aa20.56■□□□□ 0.88
CHMP4A-207ENST00000533523 XAGE3Q8WTP9 111 aa20.56■□□□□ 0.88
CHMP4A-207ENST00000533523 GPRC5DQ9NZD1 345 aa20.56■□□□□ 0.88
CHMP4A-207ENST00000533523 PCDH10Q9P2E7 1040 aa20.56■□□□□ 0.88
CHMP4A-207ENST00000533523 DUOX1Q9NRD9 1551 aa20.55■□□□□ 0.88
CHMP4A-207ENST00000533523 TMPOP42166 694 aaKnown RBP20.55■□□□□ 0.88
CHMP4A-207ENST00000533523 SLC10A5Q5PT55 438 aa20.55■□□□□ 0.88
CHMP4A-207ENST00000533523 DLK2Q6UY11 383 aa20.55■□□□□ 0.88
CHMP4A-207ENST00000533523 COPS6Q7L5N1 327 aa20.55■□□□□ 0.88
CHMP4A-207ENST00000533523 NLRP10Q86W26 655 aa20.55■□□□□ 0.88
CHMP4A-207ENST00000533523 ADARB2Q9NS39 739 aaKnown RBP20.55■□□□□ 0.88
CHMP4A-207ENST00000533523 BABAM1Q9NWV8 329 aa20.55■□□□□ 0.88
CHMP4A-207ENST00000533523 ZNRF3Q9ULT6 936 aa20.55■□□□□ 0.88
CHMP4A-207ENST00000533523 GMPSP49915 693 aaPredicted RBP20.54■□□□□ 0.88
CHMP4A-207ENST00000533523 DDX46Q7L014 1031 aaKnown RBP20.54■□□□□ 0.88
CHMP4A-207ENST00000533523 SAPCD2Q86UD0 394 aa20.54■□□□□ 0.88
CHMP4A-207ENST00000533523 MPNDQ8N594 471 aa20.54■□□□□ 0.88
CHMP4A-207ENST00000533523 ZNF428Q96B54 188 aa20.54■□□□□ 0.88
CHMP4A-207ENST00000533523 RTFDC1Q9BY42 306 aaPredicted RBP20.54■□□□□ 0.88
CHMP4A-207ENST00000533523 VPS33BQ9H267 617 aa20.54■□□□□ 0.88
CHMP4A-207ENST00000533523 TRMT112Q9UI30 125 aaKnown RBP20.54■□□□□ 0.88
CHMP4A-207ENST00000533523 ECE1P42892 770 aa20.53■□□□□ 0.88
CHMP4A-207ENST00000533523 CXCL9Q07325 125 aa20.53■□□□□ 0.88
CHMP4A-207ENST00000533523 NEUROD2Q15784 382 aa20.53■□□□□ 0.88
CHMP4A-207ENST00000533523 CCDC146Q8IYE0 955 aa20.53■□□□□ 0.88
CHMP4A-207ENST00000533523 SH3TC1Q8TE82 1336 aa20.53■□□□□ 0.88
CHMP4A-207ENST00000533523 POLR2AP24928 1970 aaKnown RBP20.52■□□□□ 0.88
CHMP4A-207ENST00000533523 COL4A1P02462 1669 aa20.52■□□□□ 0.88
CHMP4A-207ENST00000533523 SHTN1A0MZ66 631 aa20.52■□□□□ 0.88
CHMP4A-207ENST00000533523 BBOX1O75936 387 aa20.52■□□□□ 0.88
CHMP4A-207ENST00000533523 GRAPQ13588 217 aa20.52■□□□□ 0.88
CHMP4A-207ENST00000533523 KRT24Q2M2I5 525 aa20.52■□□□□ 0.88
CHMP4A-207ENST00000533523 CIAPIN1Q6FI81 312 aa20.52■□□□□ 0.88
CHMP4A-207ENST00000533523 GRAPLQ8TC17 118 aaPredicted RBP20.52■□□□□ 0.88
CHMP4A-207ENST00000533523 BEGAINQ9BUH8 593 aa20.52■□□□□ 0.88
CHMP4A-207ENST00000533523 GLIS2Q9BZE0 524 aaPredicted RBP20.52■□□□□ 0.88
CHMP4A-207ENST00000533523 LAS1LQ9Y4W2 734 aaKnown RBP20.52■□□□□ 0.88
CHMP4A-207ENST00000533523 RAD17O75943 681 aa20.51■□□□□ 0.87
CHMP4A-207ENST00000533523 KIAA2012Q0VF49 1180 aa20.51■□□□□ 0.87
CHMP4A-207ENST00000533523 SP8Q8IXZ3 490 aa20.51■□□□□ 0.87
CHMP4A-207ENST00000533523 BCL2L13Q9BXK5 485 aa20.51■□□□□ 0.87
CHMP4A-207ENST00000533523 CDHR2Q9BYE9 1310 aa20.51■□□□□ 0.87
CHMP4A-207ENST00000533523 CELF2O95319 508 aaKnown RBP20.5■□□□□ 0.87
CHMP4A-207ENST00000533523 MAP2K2P36507 400 aa20.5■□□□□ 0.87
CHMP4A-207ENST00000533523 HIRAP54198 1017 aaPredicted RBP20.5■□□□□ 0.87
CHMP4A-207ENST00000533523 TCIRG1Q13488 830 aa20.5■□□□□ 0.87
CHMP4A-207ENST00000533523 CHPF2Q9P2E5 772 aa20.5■□□□□ 0.87
CHMP4A-207ENST00000533523 CENPFP49454 3210 aa20.5■□□□□ 0.87
CHMP4A-207ENST00000533523 BRCA2P51587 3418 aa20.49■□□□□ 0.87
CHMP4A-207ENST00000533523 TNIP1Q15025 636 aa20.48■□□□□ 0.87
CHMP4A-207ENST00000533523 HDGFL1Q5TGJ6 251 aa20.48■□□□□ 0.87
CHMP4A-207ENST00000533523 TRPM4Q8TD43 1214 aa20.48■□□□□ 0.87
CHMP4A-207ENST00000533523 PRKRIP1Q9H875 184 aaPredicted RBP20.48■□□□□ 0.87
CHMP4A-207ENST00000533523 ZNF408Q9H9D4 720 aa20.48■□□□□ 0.87
CHMP4A-207ENST00000533523 BRPF1P55201 1214 aaPredicted RBP20.47■□□□□ 0.87
CHMP4A-207ENST00000533523 DGKZQ13574 1117 aa20.47■□□□□ 0.87
CHMP4A-207ENST00000533523 PGAP2Q9UHJ9 254 aa20.47■□□□□ 0.87
CHMP4A-207ENST00000533523 WDR43Q15061 677 aaKnown RBP eCLIP20.46■□□□□ 0.87
CHMP4A-207ENST00000533523 TMC4Q7Z404 712 aa20.46■□□□□ 0.87
CHMP4A-207ENST00000533523 CFAP44Q96MT7 982 aa20.46■□□□□ 0.87
CHMP4A-207ENST00000533523 SCN9AQ15858 1988 aa20.46■□□□□ 0.87
CHMP4A-207ENST00000533523 YDJCA8MPS7 323 aa20.45■□□□□ 0.86
CHMP4A-207ENST00000533523 CHL1O00533 1208 aa20.45■□□□□ 0.86
CHMP4A-207ENST00000533523 PLBD2Q8NHP8 589 aa20.45■□□□□ 0.86
CHMP4A-207ENST00000533523 ATP5J2-PTCD1G3V325 749 aa20.44■□□□□ 0.86
CHMP4A-207ENST00000533523 ANP32CO43423 234 aa20.44■□□□□ 0.86
CHMP4A-207ENST00000533523 MICALL2Q8IY33 904 aa20.44■□□□□ 0.86
CHMP4A-207ENST00000533523 FAM89AQ96GI7 184 aa20.44■□□□□ 0.86
CHMP4A-207ENST00000533523 CNOT7Q9UIV1 285 aaKnown RBP20.44■□□□□ 0.86
CHMP4A-207ENST00000533523 FAM155AB1AL88 458 aaPredicted RBP20.43■□□□□ 0.86
CHMP4A-207ENST00000533523 SOX10P56693 466 aa20.43■□□□□ 0.86
CHMP4A-207ENST00000533523 RTL5Q5HYW3 569 aaPredicted RBP20.43■□□□□ 0.86
CHMP4A-207ENST00000533523 RUNDC1Q96C34 613 aa20.43■□□□□ 0.86
CHMP4A-207ENST00000533523 HHIPL1Q96JK4 782 aa20.43■□□□□ 0.86
CHMP4A-207ENST00000533523 DBNDD1Q9H9R9 158 aa20.43■□□□□ 0.86
CHMP4A-207ENST00000533523 TRIM35Q9UPQ4 493 aa20.43■□□□□ 0.86
CHMP4A-207ENST00000533523 PSME4Q14997 1843 aa20.42■□□□□ 0.86
CHMP4A-207ENST00000533523 SPEF2Q9C093 1822 aa20.42■□□□□ 0.86
CHMP4A-207ENST00000533523 H7C1D1 291 aa20.42■□□□□ 0.86
CHMP4A-207ENST00000533523 HOXB7P09629 217 aa20.42■□□□□ 0.86
CHMP4A-207ENST00000533523 WASHC4Q2M389 1173 aa20.42■□□□□ 0.86
CHMP4A-207ENST00000533523 MIER1Q8N108 512 aa20.42■□□□□ 0.86
CHMP4A-207ENST00000533523 ZC3H15Q8WU90 426 aaKnown RBP20.42■□□□□ 0.86
CHMP4A-207ENST00000533523 CELF1Q92879 486 aaKnown RBP20.42■□□□□ 0.86
CHMP4A-207ENST00000533523 DBF4Q9UBU7 674 aaPredicted RBP20.42■□□□□ 0.86
CHMP4A-207ENST00000533523 AKAP11Q9UKA4 1901 aa20.41■□□□□ 0.86
CHMP4A-207ENST00000533523 PSMD14O00487 310 aa20.41■□□□□ 0.86
CHMP4A-207ENST00000533523 RIMBP2O15034 1052 aa20.41■□□□□ 0.86
CHMP4A-207ENST00000533523 EGFRP00533 1210 aa20.41■□□□□ 0.86
CHMP4A-207ENST00000533523 ANKRD13DQ6ZTN6 518 aa20.41■□□□□ 0.86
CHMP4A-207ENST00000533523 CDC37L1Q7L3B6 337 aa20.41■□□□□ 0.86
CHMP4A-207ENST00000533523 ISCA1Q9BUE6 129 aa20.41■□□□□ 0.86
CHMP4A-207ENST00000533523 NSFL1CQ9UNZ2 370 aaKnown RBP20.41■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 159 ms