RNA–Protein interactions for RNA: ENST00000533123.5

SMPD1-208, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene SMPD1, Length 2,211 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-208ENST00000533123 EXOC6BQ9Y2D4 811 aa22.89■■□□□ 1.25
SMPD1-208ENST00000533123 SERPINB2P05120 415 aa22.88■■□□□ 1.25
SMPD1-208ENST00000533123 CTSWP56202 376 aa22.88■■□□□ 1.25
SMPD1-208ENST00000533123 TTLL11Q8NHH1 800 aa22.88■■□□□ 1.25
SMPD1-208ENST00000533123 KLHDC4Q8TBB5 520 aa22.88■■□□□ 1.25
SMPD1-208ENST00000533123 PA2G4Q9UQ80 394 aaKnown RBP22.88■■□□□ 1.25
SMPD1-208ENST00000533123 POLRMTO00411 1230 aaKnown RBP22.88■■□□□ 1.25
SMPD1-208ENST00000533123 CSF1RP07333 972 aa22.88■■□□□ 1.25
SMPD1-208ENST00000533123 ABCC12Q96J65 1359 aa22.88■■□□□ 1.25
SMPD1-208ENST00000533123 APBB1O00213 710 aa22.87■■□□□ 1.25
SMPD1-208ENST00000533123 SURF6O75683 361 aaKnown RBP22.87■■□□□ 1.25
SMPD1-208ENST00000533123 CNBD1Q8NA66 436 aa22.87■■□□□ 1.25
SMPD1-208ENST00000533123 DDX60Q8IY21 1712 aaKnown RBP22.86■■□□□ 1.25
SMPD1-208ENST00000533123 MMP10P09238 476 aa22.86■■□□□ 1.25
SMPD1-208ENST00000533123 PRR5LQ6MZQ0 368 aa22.86■■□□□ 1.25
SMPD1-208ENST00000533123 MYH3P11055 1940 aa22.86■■□□□ 1.25
SMPD1-208ENST00000533123 HSP90B1P14625 803 aaKnown RBP22.85■■□□□ 1.25
SMPD1-208ENST00000533123 RFX5P48382 616 aaPredicted RBP22.85■■□□□ 1.25
SMPD1-208ENST00000533123 SLC10A5Q5PT55 438 aa22.85■■□□□ 1.25
SMPD1-208ENST00000533123 GREM2Q9H772 168 aa22.85■■□□□ 1.25
SMPD1-208ENST00000533123 C3orf67Q6ZVT6 689 aa22.85■■□□□ 1.25
SMPD1-208ENST00000533123 PTPN12Q05209 780 aaKnown RBP22.84■■□□□ 1.25
SMPD1-208ENST00000533123 R3HDM1Q15032 1099 aaKnown RBP22.84■■□□□ 1.25
SMPD1-208ENST00000533123 CCDC57Q2TAC2 916 aa22.84■■□□□ 1.25
SMPD1-208ENST00000533123 SIL1Q9H173 461 aa22.84■■□□□ 1.25
SMPD1-208ENST00000533123 ERICH6Q7L0X2 663 aa22.83■■□□□ 1.25
SMPD1-208ENST00000533123 ZNF594Q96JF6 807 aaPredicted RBP22.83■■□□□ 1.25
SMPD1-208ENST00000533123 ITGA6P23229 1130 aa22.82■■□□□ 1.24
SMPD1-208ENST00000533123 IFIT5Q13325 482 aaKnown RBP22.82■■□□□ 1.24
SMPD1-208ENST00000533123 NOP58Q9Y2X3 529 aaKnown RBP22.82■■□□□ 1.24
SMPD1-208ENST00000533123 PARP3Q9Y6F1 533 aa22.82■■□□□ 1.24
SMPD1-208ENST00000533123 SMARCA5O60264 1052 aaPredicted RBP22.81■■□□□ 1.24
SMPD1-208ENST00000533123 ANP32AP39687 249 aaKnown RBP22.81■■□□□ 1.24
SMPD1-208ENST00000533123 NLRP3Q96P20 1036 aa22.81■■□□□ 1.24
SMPD1-208ENST00000533123 COPRSQ9NQ92 184 aa22.81■■□□□ 1.24
SMPD1-208ENST00000533123 LAMB2P55268 1798 aa22.81■■□□□ 1.24
SMPD1-208ENST00000533123 SEC24BO95487 1268 aa22.81■■□□□ 1.24
SMPD1-208ENST00000533123 ST5P78524 1137 aa22.81■■□□□ 1.24
SMPD1-208ENST00000533123 CCDC152Q4G0S7 254 aa22.81■■□□□ 1.24
SMPD1-208ENST00000533123 OS9Q13438 667 aaPredicted RBP22.8■■□□□ 1.24
SMPD1-208ENST00000533123 C16orf71Q8IYS4 520 aaPredicted RBP22.8■■□□□ 1.24
SMPD1-208ENST00000533123 SEC31BQ9NQW1 1179 aa22.8■■□□□ 1.24
SMPD1-208ENST00000533123 SF3B3Q15393 1217 aaKnown RBP22.79■■□□□ 1.24
SMPD1-208ENST00000533123 SLC16A10Q8TF71 515 aa22.79■■□□□ 1.24
SMPD1-208ENST00000533123 ANKRD18BA2A2Z9 1011 aa22.78■■□□□ 1.24
SMPD1-208ENST00000533123 PSDA5PKW4 1024 aaPredicted RBP22.78■■□□□ 1.24
SMPD1-208ENST00000533123 G3BP1Q13283 466 aaKnown RBP eCLIP22.78■■□□□ 1.24
SMPD1-208ENST00000533123 TAF7LQ5H9L4 462 aa22.78■■□□□ 1.24
SMPD1-208ENST00000533123 ZBTB7AO95365 584 aa22.77■■□□□ 1.24
SMPD1-208ENST00000533123 HSP90AB4PQ58FF6 505 aa22.77■■□□□ 1.24
SMPD1-208ENST00000533123 OTUD7AQ8TE49 926 aaPredicted RBP22.77■■□□□ 1.24
SMPD1-208ENST00000533123 LRRCC1Q9C099 1032 aa22.77■■□□□ 1.24
SMPD1-208ENST00000533123 RAB11FIP3O75154 756 aa22.77■■□□□ 1.24
SMPD1-208ENST00000533123 PUS3Q9BZE2 481 aaKnown RBP22.77■■□□□ 1.24
SMPD1-208ENST00000533123 ZBTB47Q9UFB7 747 aaPredicted RBP22.77■■□□□ 1.24
SMPD1-208ENST00000533123 TNRC6CQ9HCJ0 1690 aaKnown RBP22.76■■□□□ 1.23
SMPD1-208ENST00000533123 RHPN1Q8TCX5 695 aa22.76■■□□□ 1.23
SMPD1-208ENST00000533123 IL1RAPL2Q9NP60 686 aa22.76■■□□□ 1.23
SMPD1-208ENST00000533123 CASZ1Q86V15 1759 aa22.76■■□□□ 1.23
SMPD1-208ENST00000533123 LRRC24Q50LG9 513 aa22.76■■□□□ 1.23
SMPD1-208ENST00000533123 SASH1O94885 1247 aa22.75■■□□□ 1.23
SMPD1-208ENST00000533123 PLEKHM2Q8IWE5 1019 aa22.75■■□□□ 1.23
SMPD1-208ENST00000533123 KIF1BPQ96EK5 621 aa22.75■■□□□ 1.23
SMPD1-208ENST00000533123 NRXN2Q9P2S2 1712 aa22.75■■□□□ 1.23
SMPD1-208ENST00000533123 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP22.74■■□□□ 1.23
SMPD1-208ENST00000533123 RTL9Q8NET4 1388 aa22.74■■□□□ 1.23
SMPD1-208ENST00000533123 EYA2O00167 538 aa22.74■■□□□ 1.23
SMPD1-208ENST00000533123 LDHAL6AQ6ZMR3 332 aa22.74■■□□□ 1.23
SMPD1-208ENST00000533123 ATG9AQ7Z3C6 839 aa22.74■■□□□ 1.23
SMPD1-208ENST00000533123 ERC1Q8IUD2 1116 aa22.73■■□□□ 1.23
SMPD1-208ENST00000533123 ATF5Q9Y2D1 282 aaPredicted RBP22.73■■□□□ 1.23
SMPD1-208ENST00000533123 TAF1P21675 1872 aa22.73■■□□□ 1.23
SMPD1-208ENST00000533123 BMP2KLQ5H9B9 411 aa22.73■■□□□ 1.23
SMPD1-208ENST00000533123 BRIP1Q9BX63 1249 aa22.73■■□□□ 1.23
SMPD1-208ENST00000533123 RIC1Q4ADV7 1423 aa22.72■■□□□ 1.23
SMPD1-208ENST00000533123 COL4A1P02462 1669 aa22.71■■□□□ 1.23
SMPD1-208ENST00000533123 CIAO1O76071 339 aa22.71■■□□□ 1.23
SMPD1-208ENST00000533123 TFCP2Q12800 502 aa22.71■■□□□ 1.23
SMPD1-208ENST00000533123 CRY2Q49AN0 593 aa22.71■■□□□ 1.23
SMPD1-208ENST00000533123 CELF1Q92879 486 aaKnown RBP22.71■■□□□ 1.23
SMPD1-208ENST00000533123 CDC5LQ99459 802 aaKnown RBP22.71■■□□□ 1.23
SMPD1-208ENST00000533123 MTFR1LQ9H019 292 aa22.71■■□□□ 1.23
SMPD1-208ENST00000533123 CNNM1Q9NRU3 951 aa22.71■■□□□ 1.23
SMPD1-208ENST00000533123 IL15P40933 162 aaPredicted RBP22.7■■□□□ 1.23
SMPD1-208ENST00000533123 DDX46Q7L014 1031 aaKnown RBP22.7■■□□□ 1.23
SMPD1-208ENST00000533123 MPHOSPH8Q99549 860 aa22.7■■□□□ 1.23
SMPD1-208ENST00000533123 GSPT1P15170 499 aaKnown RBP22.7■■□□□ 1.22
SMPD1-208ENST00000533123 IGHMBP2P38935 993 aaKnown RBP22.7■■□□□ 1.22
SMPD1-208ENST00000533123 ANKRD31Q8N7Z5 1873 aa22.7■■□□□ 1.22
SMPD1-208ENST00000533123 IPO9Q96P70 1041 aaKnown RBP22.7■■□□□ 1.22
SMPD1-208ENST00000533123 FBXO3Q9UK99 471 aa22.7■■□□□ 1.22
SMPD1-208ENST00000533123 GOLGB1Q14789 3259 aaKnown RBP22.69■■□□□ 1.22
SMPD1-208ENST00000533123 KLRG2A4D1S0 409 aaPredicted RBP22.69■■□□□ 1.22
SMPD1-208ENST00000533123 ANKRD18AQ8IVF6 992 aa22.69■■□□□ 1.22
SMPD1-208ENST00000533123 RPGRQ92834 1020 aaKnown RBP22.69■■□□□ 1.22
SMPD1-208ENST00000533123 RIPOR2Q9Y4F9 1068 aa22.69■■□□□ 1.22
SMPD1-208ENST00000533123 CLASRPQ8N2M8 674 aaKnown RBP22.67■■□□□ 1.22
SMPD1-208ENST00000533123 PDE6BP35913 854 aa22.67■■□□□ 1.22
SMPD1-208ENST00000533123 RPS8P62241 208 aaKnown RBP22.67■■□□□ 1.22
SMPD1-208ENST00000533123 TTC22Q5TAA0 569 aa22.67■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms