RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 ZNF784Q8NCA9 323 aaPredicted RBP25.21■■□□□ 1.63
CPSF1-209ENST00000532725 SRCIN1Q9C0H9 1055 aa25.21■■□□□ 1.63
CPSF1-209ENST00000532725 NOB1Q9ULX3 412 aaKnown RBP25.21■■□□□ 1.63
CPSF1-209ENST00000532725 ATP6V0A2Q9Y487 856 aa25.21■■□□□ 1.63
CPSF1-209ENST00000532725 CACNA1SQ13698 1873 aa25.2■■□□□ 1.62
CPSF1-209ENST00000532725 SLC51AQ86UW1 340 aa25.2■■□□□ 1.62
CPSF1-209ENST00000532725 PLA2G12BQ9BX93 195 aa25.2■■□□□ 1.62
CPSF1-209ENST00000532725 TAOK3Q9H2K8 898 aa25.2■■□□□ 1.62
CPSF1-209ENST00000532725 RNF181Q9P0P0 153 aa25.2■■□□□ 1.62
CPSF1-209ENST00000532725 SP8Q8IXZ3 490 aa25.19■■□□□ 1.62
CPSF1-209ENST00000532725 TTLL11Q8NHH1 800 aa25.19■■□□□ 1.62
CPSF1-209ENST00000532725 CELF1Q92879 486 aaKnown RBP25.19■■□□□ 1.62
CPSF1-209ENST00000532725 FER1L6Q2WGJ9 1857 aa25.19■■□□□ 1.62
CPSF1-209ENST00000532725 SBF1O95248 1867 aa25.18■■□□□ 1.62
CPSF1-209ENST00000532725 FKBP4Q02790 459 aaKnown RBP eCLIP25.18■■□□□ 1.62
CPSF1-209ENST00000532725 CCDC152Q4G0S7 254 aa25.18■■□□□ 1.62
CPSF1-209ENST00000532725 GRIPAP1Q4V328 841 aa25.18■■□□□ 1.62
CPSF1-209ENST00000532725 SEC31BQ9NQW1 1179 aa25.18■■□□□ 1.62
CPSF1-209ENST00000532725 SNED1Q8TER0 1413 aa25.18■■□□□ 1.62
CPSF1-209ENST00000532725 CTSWP56202 376 aa25.17■■□□□ 1.62
CPSF1-209ENST00000532725 GRM8O00222 908 aa25.16■■□□□ 1.62
CPSF1-209ENST00000532725 BCAR3O75815 825 aa25.16■■□□□ 1.62
CPSF1-209ENST00000532725 RPS8P62241 208 aaKnown RBP25.16■■□□□ 1.62
CPSF1-209ENST00000532725 ARHGAP45Q92619 1136 aa25.16■■□□□ 1.62
CPSF1-209ENST00000532725 CCDC85AQ96PX6 553 aaPredicted RBP25.16■■□□□ 1.62
CPSF1-209ENST00000532725 PSMD1Q99460 953 aa25.16■■□□□ 1.62
CPSF1-209ENST00000532725 CSF1RP07333 972 aa25.15■■□□□ 1.62
CPSF1-209ENST00000532725 TMC4Q7Z404 712 aa25.15■■□□□ 1.62
CPSF1-209ENST00000532725 C9orf78Q9NZ63 289 aaPredicted RBP25.15■■□□□ 1.62
CPSF1-209ENST00000532725 TAF1P21675 1872 aa25.15■■□□□ 1.62
CPSF1-209ENST00000532725 API5Q9BZZ5 524 aaKnown RBP25.14■■□□□ 1.62
CPSF1-209ENST00000532725 TMX4Q9H1E5 349 aaPredicted RBP25.14■■□□□ 1.62
CPSF1-209ENST00000532725 FOXO4P98177 505 aa25.13■■□□□ 1.61
CPSF1-209ENST00000532725 GREM2Q9H772 168 aa25.13■■□□□ 1.61
CPSF1-209ENST00000532725 ZNF277Q9NRM2 450 aaPredicted RBP25.13■■□□□ 1.61
CPSF1-209ENST00000532725 UTYO14607 1347 aa25.12■■□□□ 1.61
CPSF1-209ENST00000532725 COL4A1P02462 1669 aa25.11■■□□□ 1.61
CPSF1-209ENST00000532725 RTL9Q8NET4 1388 aa25.11■■□□□ 1.61
CPSF1-209ENST00000532725 NBPF7P0C2Y1 421 aaPredicted RBP25.11■■□□□ 1.61
CPSF1-209ENST00000532725 KIF16BQ96L93 1317 aa25.11■■□□□ 1.61
CPSF1-209ENST00000532725 EPHA10Q5JZY3 1008 aa25.1■■□□□ 1.61
CPSF1-209ENST00000532725 MPNDQ8N594 471 aa25.1■■□□□ 1.61
CPSF1-209ENST00000532725 RTFDC1Q9BY42 306 aaPredicted RBP25.1■■□□□ 1.61
CPSF1-209ENST00000532725 USP44Q9H0E7 712 aa25.1■■□□□ 1.61
CPSF1-209ENST00000532725 ZC3H4Q9UPT8 1303 aaKnown RBP25.1■■□□□ 1.61
CPSF1-209ENST00000532725 CCDC88AQ3V6T2 1871 aa25.09■■□□□ 1.61
CPSF1-209ENST00000532725 IPO8O15397 1037 aaKnown RBP25.09■■□□□ 1.61
CPSF1-209ENST00000532725 KAZALD1Q96I82 304 aa25.09■■□□□ 1.61
CPSF1-209ENST00000532725 IARSP41252 1262 aaKnown RBP25.08■■□□□ 1.61
CPSF1-209ENST00000532725 CCT4P50991 539 aaKnown RBP25.08■■□□□ 1.61
CPSF1-209ENST00000532725 ANKRD18AQ8IVF6 992 aa25.08■■□□□ 1.61
CPSF1-209ENST00000532725 CDC5LQ99459 802 aaKnown RBP25.08■■□□□ 1.61
CPSF1-209ENST00000532725 DPP8Q6V1X1 898 aaPredicted RBP25.07■■□□□ 1.6
CPSF1-209ENST00000532725 SUCLG2Q96I99 432 aa25.07■■□□□ 1.6
CPSF1-209ENST00000532725 ITGA6P23229 1130 aa25.06■■□□□ 1.6
CPSF1-209ENST00000532725 FAM161AQ3B820 660 aa25.06■■□□□ 1.6
CPSF1-209ENST00000532725 LMBR1LQ6UX01 489 aa25.06■■□□□ 1.6
CPSF1-209ENST00000532725 ATF7IPQ6VMQ6 1270 aa25.06■■□□□ 1.6
CPSF1-209ENST00000532725 ZNF526Q8TF50 670 aaPredicted RBP25.06■■□□□ 1.6
CPSF1-209ENST00000532725 FRAT1Q92837 279 aaPredicted RBP25.06■■□□□ 1.6
CPSF1-209ENST00000532725 VPS33BQ9H267 617 aa25.06■■□□□ 1.6
CPSF1-209ENST00000532725 BSDC1Q9NW68 430 aaPredicted RBP25.06■■□□□ 1.6
CPSF1-209ENST00000532725 TRIM27P14373 513 aa25.05■■□□□ 1.6
CPSF1-209ENST00000532725 GPSM2P81274 684 aa25.05■■□□□ 1.6
CPSF1-209ENST00000532725 INTS3Q68E01 1043 aaKnown RBP25.05■■□□□ 1.6
CPSF1-209ENST00000532725 SUPT20HQ8NEM7 779 aa25.05■■□□□ 1.6
CPSF1-209ENST00000532725 GPBP1L1Q9HC44 474 aaPredicted RBP25.05■■□□□ 1.6
CPSF1-209ENST00000532725 NSFL1CQ9UNZ2 370 aaKnown RBP25.05■■□□□ 1.6
CPSF1-209ENST00000532725 MYH3P11055 1940 aa25.04■■□□□ 1.6
CPSF1-209ENST00000532725 TNNQ9UQP3 1299 aa25.04■■□□□ 1.6
CPSF1-209ENST00000532725 DICER1Q9UPY3 1922 aaKnown RBP25.04■■□□□ 1.6
CPSF1-209ENST00000532725 GLTPD2A6NH11 291 aa25.03■■□□□ 1.6
CPSF1-209ENST00000532725 PODXL2Q9NZ53 605 aa25.03■■□□□ 1.6
CPSF1-209ENST00000532725 POLLQ9UGP5 575 aa25.03■■□□□ 1.6
CPSF1-209ENST00000532725 ANKRD18BA2A2Z9 1011 aa25.02■■□□□ 1.6
CPSF1-209ENST00000532725 ZKSCAN2Q63HK3 967 aa25.02■■□□□ 1.6
CPSF1-209ENST00000532725 FZD9O00144 591 aa25.01■■□□□ 1.59
CPSF1-209ENST00000532725 IGHMBP2P38935 993 aaKnown RBP25.01■■□□□ 1.59
CPSF1-209ENST00000532725 IFIT5Q13325 482 aaKnown RBP25.01■■□□□ 1.59
CPSF1-209ENST00000532725 RABL6Q3YEC7 729 aaPredicted RBP25.01■■□□□ 1.59
CPSF1-209ENST00000532725 DPY19L2Q6NUT2 758 aa25.01■■□□□ 1.59
CPSF1-209ENST00000532725 LARGE2Q8N3Y3 721 aa25.01■■□□□ 1.59
CPSF1-209ENST00000532725 JDP2Q8WYK2 163 aa25.01■■□□□ 1.59
CPSF1-209ENST00000532725 MINPP1Q9UNW1 487 aa25.01■■□□□ 1.59
CPSF1-209ENST00000532725 LRRC37AA6NMS7 1700 aa25■■□□□ 1.59
CPSF1-209ENST00000532725 PPIP5K2O43314 1243 aa25■■□□□ 1.59
CPSF1-209ENST00000532725 AOC3Q16853 763 aa25■■□□□ 1.59
CPSF1-209ENST00000532725 ANKRD44Q8N8A2 993 aa25■■□□□ 1.59
CPSF1-209ENST00000532725 TBC1D16Q8TBP0 767 aa25■■□□□ 1.59
CPSF1-209ENST00000532725 BICC1Q9H694 974 aaKnown RBP25■■□□□ 1.59
CPSF1-209ENST00000532725 CHMP3Q9Y3E7 222 aa25■■□□□ 1.59
CPSF1-209ENST00000532725 KDM2BQ8NHM5 1336 aa25■■□□□ 1.59
CPSF1-209ENST00000532725 KIAA2012Q0VF49 1180 aa24.99■■□□□ 1.59
CPSF1-209ENST00000532725 CLUAP1Q96AJ1 413 aa24.99■■□□□ 1.59
CPSF1-209ENST00000532725 ANKIB1Q9P2G1 1089 aa24.99■■□□□ 1.59
CPSF1-209ENST00000532725 COL4A5P29400 1685 aa24.98■■□□□ 1.59
CPSF1-209ENST00000532725 C6orf229H3BNL8 230 aa24.98■■□□□ 1.59
CPSF1-209ENST00000532725 CCDC57Q2TAC2 916 aa24.98■■□□□ 1.59
CPSF1-209ENST00000532725 MPHOSPH8Q99549 860 aa24.98■■□□□ 1.59
CPSF1-209ENST00000532725 NMRK2Q9NPI5 230 aa24.98■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms