RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 CHRNA4P43681 627 aa7.66□□□□□ -1.18
CD44-235ENST00000532339 TRIM28Q13263 835 aaKnown RBP7.66□□□□□ -1.18
CD44-235ENST00000532339 C16orf46Q6P387 395 aa7.66□□□□□ -1.18
CD44-235ENST00000532339 KRT25Q7Z3Z0 450 aa7.66□□□□□ -1.18
CD44-235ENST00000532339 JPH1Q9HDC5 661 aaPredicted RBP7.66□□□□□ -1.18
CD44-235ENST00000532339 RTCBQ9Y3I0 505 aaKnown RBP7.66□□□□□ -1.18
CD44-235ENST00000532339 OPLAHO14841 1288 aa7.65□□□□□ -1.18
CD44-235ENST00000532339 PTCD1O75127 700 aaKnown RBP7.65□□□□□ -1.18
CD44-235ENST00000532339 APBA3O96018 575 aa7.65□□□□□ -1.18
CD44-235ENST00000532339 RARAP10276 462 aa7.65□□□□□ -1.18
CD44-235ENST00000532339 BRD2P25440 801 aaKnown RBP7.65□□□□□ -1.18
CD44-235ENST00000532339 ARID4AP29374 1257 aaPredicted RBP7.65□□□□□ -1.18
CD44-235ENST00000532339 CLP1Q92989 425 aaKnown RBP7.65□□□□□ -1.18
CD44-235ENST00000532339 ARID3CA6NKF2 412 aa7.64□□□□□ -1.19
CD44-235ENST00000532339 SASH3O75995 380 aa7.64□□□□□ -1.19
CD44-235ENST00000532339 EGFRP00533 1210 aa7.64□□□□□ -1.19
CD44-235ENST00000532339 TARSP26639 723 aaKnown RBP7.64□□□□□ -1.19
CD44-235ENST00000532339 PSAPL1Q6NUJ1 521 aa7.64□□□□□ -1.19
CD44-235ENST00000532339 DHX32Q7L7V1 743 aaKnown RBP7.64□□□□□ -1.19
CD44-235ENST00000532339 RGL4Q8IZJ4 473 aa7.64□□□□□ -1.19
CD44-235ENST00000532339 NUDT8Q8WV74 236 aa7.64□□□□□ -1.19
CD44-235ENST00000532339 MKNK1Q9BUB5 465 aa7.64□□□□□ -1.19
CD44-235ENST00000532339 ZFATQ9P243 1243 aa7.64□□□□□ -1.19
CD44-235ENST00000532339 ADAM23O75077 832 aa7.63□□□□□ -1.19
CD44-235ENST00000532339 RGS9O75916 674 aaPredicted RBP7.63□□□□□ -1.19
CD44-235ENST00000532339 TRAPPC3LQ5T215 181 aa7.63□□□□□ -1.19
CD44-235ENST00000532339 FAM35AQ86V20 835 aa7.63□□□□□ -1.19
CD44-235ENST00000532339 CMTR1Q8N1G2 835 aaKnown RBP7.63□□□□□ -1.19
CD44-235ENST00000532339 TRPM4Q8TD43 1214 aa7.63□□□□□ -1.19
CD44-235ENST00000532339 NACC1Q96RE7 527 aa7.63□□□□□ -1.19
CD44-235ENST00000532339 SAP130Q9H0E3 1048 aa7.63□□□□□ -1.19
CD44-235ENST00000532339 NAGPAQ9UK23 515 aa7.63□□□□□ -1.19
CD44-235ENST00000532339 FAM229AH3BQW9 127 aa7.62□□□□□ -1.19
CD44-235ENST00000532339 XYLBO75191 536 aa7.62□□□□□ -1.19
CD44-235ENST00000532339 CPB1P15086 417 aa7.62□□□□□ -1.19
CD44-235ENST00000532339 GATA4P43694 442 aa7.62□□□□□ -1.19
CD44-235ENST00000532339 GPLD1P80108 840 aa7.62□□□□□ -1.19
CD44-235ENST00000532339 ETFBKMTQ8IXQ9 262 aa7.62□□□□□ -1.19
CD44-235ENST00000532339 FRRS1LQ9P0K9 344 aa7.62□□□□□ -1.19
CD44-235ENST00000532339 USP20Q9Y2K6 914 aa7.62□□□□□ -1.19
CD44-235ENST00000532339 K7ELQ4 463 aaPredicted RBP7.61□□□□□ -1.19
CD44-235ENST00000532339 AFF1P51825 1210 aaKnown RBP7.61□□□□□ -1.19
CD44-235ENST00000532339 FAM13BQ9NYF5 915 aa7.61□□□□□ -1.19
CD44-235ENST00000532339 A0A0A0MRY4 1105 aa7.6□□□□□ -1.19
CD44-235ENST00000532339 ZBTB42B2RXF5 422 aa7.6□□□□□ -1.19
CD44-235ENST00000532339 FURINP09958 794 aa7.6□□□□□ -1.19
CD44-235ENST00000532339 NRLP54845 237 aa7.6□□□□□ -1.19
CD44-235ENST00000532339 RAC1P63000 192 aa7.6□□□□□ -1.19
CD44-235ENST00000532339 NAA30Q147X3 362 aaPredicted RBP7.6□□□□□ -1.19
CD44-235ENST00000532339 ELMSAN1Q6PJG2 1045 aa7.6□□□□□ -1.19
CD44-235ENST00000532339 TLR7Q9NYK1 1049 aaKnown RBP7.6□□□□□ -1.19
CD44-235ENST00000532339 KCNMB2Q9Y691 235 aa7.6□□□□□ -1.19
CD44-235ENST00000532339 MYO15BQ96JP2 1530 aa7.6□□□□□ -1.19
CD44-235ENST00000532339 TNFRSF10BO14763 440 aa7.59□□□□□ -1.19
CD44-235ENST00000532339 PSAPP07602 524 aa7.59□□□□□ -1.19
CD44-235ENST00000532339 ELNP15502 786 aa7.59□□□□□ -1.19
CD44-235ENST00000532339 ATP2B4P23634 1241 aa7.59□□□□□ -1.19
CD44-235ENST00000532339 MLLT1Q03111 559 aaPredicted RBP7.59□□□□□ -1.19
CD44-235ENST00000532339 PERM1Q5SV97 790 aa7.59□□□□□ -1.19
CD44-235ENST00000532339 CAPN12Q6ZSI9 719 aa7.59□□□□□ -1.19
CD44-235ENST00000532339 CCDC82Q8N4S0 544 aa7.59□□□□□ -1.19
CD44-235ENST00000532339 TTC9Q92623 222 aa7.59□□□□□ -1.19
CD44-235ENST00000532339 LPIN3Q9BQK8 851 aa7.59□□□□□ -1.19
CD44-235ENST00000532339 LOC100996750A0A140TA64 210 aa7.58□□□□□ -1.2
CD44-235ENST00000532339 PLAURQ03405 335 aa7.58□□□□□ -1.2
CD44-235ENST00000532339 GRIK4Q16099 956 aa7.58□□□□□ -1.2
CD44-235ENST00000532339 ABTB2Q8N961 1025 aa7.58□□□□□ -1.2
CD44-235ENST00000532339 PIK3R5Q8WYR1 880 aa7.58□□□□□ -1.2
CD44-235ENST00000532339 KRTAP4-6Q9BYQ5 205 aa7.58□□□□□ -1.2
CD44-235ENST00000532339 STIM2Q9P246 746 aa7.58□□□□□ -1.2
CD44-235ENST00000532339 SLAIN2Q9P270 581 aa7.58□□□□□ -1.2
CD44-235ENST00000532339 C9orf172C9J069 976 aa7.57□□□□□ -1.2
CD44-235ENST00000532339 PPP1R15AO75807 674 aaPredicted RBP7.57□□□□□ -1.2
CD44-235ENST00000532339 MSL1Q68DK7 614 aa7.57□□□□□ -1.2
CD44-235ENST00000532339 NLRP13Q86W25 1043 aa7.57□□□□□ -1.2
CD44-235ENST00000532339 DMRTC2Q8IXT2 367 aaPredicted RBP7.57□□□□□ -1.2
CD44-235ENST00000532339 MMP20O60882 483 aa7.56□□□□□ -1.2
CD44-235ENST00000532339 HOXD8P13378 290 aaPredicted RBP7.56□□□□□ -1.2
CD44-235ENST00000532339 EIF2AK2P19525 551 aaKnown RBP7.56□□□□□ -1.2
CD44-235ENST00000532339 SOX18P35713 384 aa7.56□□□□□ -1.2
CD44-235ENST00000532339 ZAP70P43403 619 aa7.56□□□□□ -1.2
CD44-235ENST00000532339 DOC2BQ14184 412 aa7.56□□□□□ -1.2
CD44-235ENST00000532339 TRIP4Q15650 581 aaPredicted RBP7.56□□□□□ -1.2
CD44-235ENST00000532339 GRIK5Q16478 980 aa7.56□□□□□ -1.2
CD44-235ENST00000532339 FAM26DQ5JW98 314 aa7.56□□□□□ -1.2
CD44-235ENST00000532339 HFE2Q6ZVN8 426 aa7.56□□□□□ -1.2
CD44-235ENST00000532339 ILDR2Q71H61 639 aa7.56□□□□□ -1.2
CD44-235ENST00000532339 FMR1NBQ8N0W7 255 aaPredicted RBP7.56□□□□□ -1.2
CD44-235ENST00000532339 DTWD1Q8N5C7 304 aa7.56□□□□□ -1.2
CD44-235ENST00000532339 SMG9Q9H0W8 520 aaKnown RBP7.56□□□□□ -1.2
CD44-235ENST00000532339 FNDC3AQ9Y2H6 1198 aaKnown RBP7.56□□□□□ -1.2
CD44-235ENST00000532339 LOC102724428A0A0B4J2F2 783 aa7.55□□□□□ -1.2
CD44-235ENST00000532339 UBAP1LF5GYI3 381 aa7.55□□□□□ -1.2
CD44-235ENST00000532339 GHRHP01286 108 aa7.55□□□□□ -1.2
CD44-235ENST00000532339 SIK1P57059 783 aa7.55□□□□□ -1.2
CD44-235ENST00000532339 C14orf37Q86TY3 774 aa7.55□□□□□ -1.2
CD44-235ENST00000532339 WFDC8Q8IUA0 241 aa7.55□□□□□ -1.2
CD44-235ENST00000532339 RBSNQ9H1K0 784 aa7.55□□□□□ -1.2
CD44-235ENST00000532339 NRG1Q02297 640 aaPredicted RBP7.54□□□□□ -1.2
CD44-235ENST00000532339 PLD4Q96BZ4 506 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms