RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 PPIP5K2O43314 1243 aa17.08■□□□□ 0.32
VPS28-211ENST00000530790 EIF6P56537 245 aaKnown RBP17.08■□□□□ 0.32
VPS28-211ENST00000530790 SF3B3Q15393 1217 aaKnown RBP17.08■□□□□ 0.32
VPS28-211ENST00000530790 DPP8Q6V1X1 898 aaPredicted RBP17.08■□□□□ 0.32
VPS28-211ENST00000530790 KSR2Q6VAB6 950 aa17.08■□□□□ 0.32
VPS28-211ENST00000530790 SP8Q8IXZ3 490 aa17.08■□□□□ 0.32
VPS28-211ENST00000530790 NIM1KQ8IY84 436 aa17.08■□□□□ 0.32
VPS28-211ENST00000530790 PI4KAP2A4QPH2 592 aa17.07■□□□□ 0.32
VPS28-211ENST00000530790 PCCAP05165 728 aaPredicted RBP17.07■□□□□ 0.32
VPS28-211ENST00000530790 NEXNQ0ZGT2 675 aa17.07■□□□□ 0.32
VPS28-211ENST00000530790 GPC2Q8N158 579 aa17.07■□□□□ 0.32
VPS28-211ENST00000530790 MPNDQ8N594 471 aa17.07■□□□□ 0.32
VPS28-211ENST00000530790 PI4KAP1Q8N8J0 262 aa17.07■□□□□ 0.32
VPS28-211ENST00000530790 MYH16Q9H6N6 1097 aa17.07■□□□□ 0.32
VPS28-211ENST00000530790 SCN4AP35499 1836 aa17.07■□□□□ 0.32
VPS28-211ENST00000530790 SLC4A2P04920 1241 aa17.06■□□□□ 0.32
VPS28-211ENST00000530790 EXOSC9Q06265 439 aaKnown RBP17.06■□□□□ 0.32
VPS28-211ENST00000530790 AOC3Q16853 763 aa17.06■□□□□ 0.32
VPS28-211ENST00000530790 RTFDC1Q9BY42 306 aaPredicted RBP17.06■□□□□ 0.32
VPS28-211ENST00000530790 VPS33BQ9H267 617 aa17.06■□□□□ 0.32
VPS28-211ENST00000530790 FLIIQ13045 1269 aa17.05■□□□□ 0.32
VPS28-211ENST00000530790 CELF1Q92879 486 aaKnown RBP17.05■□□□□ 0.32
VPS28-211ENST00000530790 TAF1DQ9H5J8 278 aaPredicted RBP17.05■□□□□ 0.32
VPS28-211ENST00000530790 HACL1Q9UJ83 578 aa17.05■□□□□ 0.32
VPS28-211ENST00000530790 DUOX1Q9NRD9 1551 aa17.04■□□□□ 0.32
VPS28-211ENST00000530790 CCDC152Q4G0S7 254 aa17.04■□□□□ 0.32
VPS28-211ENST00000530790 CHADLQ6NUI6 762 aa17.04■□□□□ 0.32
VPS28-211ENST00000530790 G2E3Q7L622 706 aa17.04■□□□□ 0.32
VPS28-211ENST00000530790 GJA3Q9Y6H8 435 aa17.04■□□□□ 0.32
VPS28-211ENST00000530790 CDHR2Q9BYE9 1310 aa17.03■□□□□ 0.32
VPS28-211ENST00000530790 PDE8AO60658 829 aa17.03■□□□□ 0.32
VPS28-211ENST00000530790 IGKV5-2P06315 115 aa17.03■□□□□ 0.32
VPS28-211ENST00000530790 POTEIP0CG38 1075 aa17.03■□□□□ 0.32
VPS28-211ENST00000530790 POTEJP0CG39 1038 aa17.03■□□□□ 0.32
VPS28-211ENST00000530790 KIAA2012Q0VF49 1180 aa17.03■□□□□ 0.32
VPS28-211ENST00000530790 FKBP5Q13451 457 aaPredicted RBP17.03■□□□□ 0.32
VPS28-211ENST00000530790 LDHDQ86WU2 507 aa17.03■□□□□ 0.32
VPS28-211ENST00000530790 SPINK5Q9NQ38 1064 aaPredicted RBP17.03■□□□□ 0.32
VPS28-211ENST00000530790 COL4A1P02462 1669 aa17.03■□□□□ 0.32
VPS28-211ENST00000530790 TAF1P21675 1872 aa17.03■□□□□ 0.32
VPS28-211ENST00000530790 VAMP4O75379 141 aa17.02■□□□□ 0.32
VPS28-211ENST00000530790 LMOD1P29536 600 aaPredicted RBP17.02■□□□□ 0.32
VPS28-211ENST00000530790 EPHX2P34913 555 aa17.02■□□□□ 0.32
VPS28-211ENST00000530790 EAPPQ56P03 285 aaPredicted RBP17.02■□□□□ 0.32
VPS28-211ENST00000530790 JARID2Q92833 1246 aaPredicted RBP17.02■□□□□ 0.32
VPS28-211ENST00000530790 NEURL1BA8MQ27 555 aa17.01■□□□□ 0.31
VPS28-211ENST00000530790 HTRA3P83110 453 aa17.01■□□□□ 0.31
VPS28-211ENST00000530790 CWF19L2Q2TBE0 894 aaKnown RBP17.01■□□□□ 0.31
VPS28-211ENST00000530790 ZNRF3Q9ULT6 936 aa17.01■□□□□ 0.31
VPS28-211ENST00000530790 ZNF521Q96K83 1311 aa17■□□□□ 0.31
VPS28-211ENST00000530790 CTSWP56202 376 aa17■□□□□ 0.31
VPS28-211ENST00000530790 RPS8P62241 208 aaKnown RBP17■□□□□ 0.31
VPS28-211ENST00000530790 PNMA8AQ86V59 439 aaPredicted RBP17■□□□□ 0.31
VPS28-211ENST00000530790 DNAAF4Q8WXU2 420 aa17■□□□□ 0.31
VPS28-211ENST00000530790 CCDC85AQ96PX6 553 aaPredicted RBP17■□□□□ 0.31
VPS28-211ENST00000530790 SEC31BQ9NQW1 1179 aa17■□□□□ 0.31
VPS28-211ENST00000530790 NSFL1CQ9UNZ2 370 aaKnown RBP17■□□□□ 0.31
VPS28-211ENST00000530790 ADAMTSL1Q8N6G6 1762 aa17■□□□□ 0.31
VPS28-211ENST00000530790 LTBP1Q14766 1721 aa16.99■□□□□ 0.31
VPS28-211ENST00000530790 SCNN1DP51172 638 aa16.99■□□□□ 0.31
VPS28-211ENST00000530790 UBE3BQ7Z3V4 1068 aa16.99■□□□□ 0.31
VPS28-211ENST00000530790 DNAJC5GQ8N7S2 189 aa16.99■□□□□ 0.31
VPS28-211ENST00000530790 CLEC11AQ9Y240 323 aa16.99■□□□□ 0.31
VPS28-211ENST00000530790 C6orf229H3BNL8 230 aa16.98■□□□□ 0.31
VPS28-211ENST00000530790 GPSM2P81274 684 aa16.98■□□□□ 0.31
VPS28-211ENST00000530790 WASHC4Q2M389 1173 aa16.98■□□□□ 0.31
VPS28-211ENST00000530790 KLRG1Q96E93 195 aa16.98■□□□□ 0.31
VPS28-211ENST00000530790 EYA3Q99504 573 aa16.98■□□□□ 0.31
VPS28-211ENST00000530790 CACNA1FO60840 1977 aa16.97■□□□□ 0.31
VPS28-211ENST00000530790 CXCL9Q07325 125 aa16.97■□□□□ 0.31
VPS28-211ENST00000530790 GCKRQ14397 625 aa16.97■□□□□ 0.31
VPS28-211ENST00000530790 CIAPIN1Q6FI81 312 aa16.97■□□□□ 0.31
VPS28-211ENST00000530790 ANKRD18AQ8IVF6 992 aa16.97■□□□□ 0.31
VPS28-211ENST00000530790 LINS1Q8NG48 757 aa16.97■□□□□ 0.31
VPS28-211ENST00000530790 CDC5LQ99459 802 aaKnown RBP16.97■□□□□ 0.31
VPS28-211ENST00000530790 RAD17O75943 681 aa16.96■□□□□ 0.31
VPS28-211ENST00000530790 TNIP1Q15025 636 aa16.96■□□□□ 0.31
VPS28-211ENST00000530790 ANKIB1Q9P2G1 1089 aa16.96■□□□□ 0.31
VPS28-211ENST00000530790 POLLQ9UGP5 575 aa16.96■□□□□ 0.31
VPS28-211ENST00000530790 RTL9Q8NET4 1388 aa16.96■□□□□ 0.31
VPS28-211ENST00000530790 MYH3P11055 1940 aa16.96■□□□□ 0.3
VPS28-211ENST00000530790 H7C1W4 665 aa16.95■□□□□ 0.3
VPS28-211ENST00000530790 UFL1O94874 794 aa16.95■□□□□ 0.3
VPS28-211ENST00000530790 EPS15P42566 896 aa16.95■□□□□ 0.3
VPS28-211ENST00000530790 TTLL11Q8NHH1 800 aa16.95■□□□□ 0.3
VPS28-211ENST00000530790 TBC1D16Q8TBP0 767 aa16.95■□□□□ 0.3
VPS28-211ENST00000530790 GREM2Q9H772 168 aa16.95■□□□□ 0.3
VPS28-211ENST00000530790 PODXL2Q9NZ53 605 aa16.95■□□□□ 0.3
VPS28-211ENST00000530790 GPRC5DQ9NZD1 345 aa16.95■□□□□ 0.3
VPS28-211ENST00000530790 GGA1Q9UJY5 639 aa16.95■□□□□ 0.3
VPS28-211ENST00000530790 PASKQ96RG2 1323 aa16.95■□□□□ 0.3
VPS28-211ENST00000530790 YDJCA8MPS7 323 aa16.94■□□□□ 0.3
VPS28-211ENST00000530790 E9PSI1 815 aa16.94■□□□□ 0.3
VPS28-211ENST00000530790 F6X3S4 739 aa16.94■□□□□ 0.3
VPS28-211ENST00000530790 CCER2I3L3R5 266 aa16.94■□□□□ 0.3
VPS28-211ENST00000530790 RIMBP2O15034 1052 aa16.94■□□□□ 0.3
VPS28-211ENST00000530790 GMPSP49915 693 aaPredicted RBP16.94■□□□□ 0.3
VPS28-211ENST00000530790 USP50Q70EL3 339 aaPredicted RBP16.94■□□□□ 0.3
VPS28-211ENST00000530790 BCL2L13Q9BXK5 485 aa16.94■□□□□ 0.3
VPS28-211ENST00000530790 DBNDD1Q9H9R9 158 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms