RNA–Protein interactions for RNA: ENST00000529813.1

USP47-208, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2

Gene USP47, Length 3,123 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-208ENST00000529813 FAM161AQ3B820 660 aa5.83□□□□□ -1.48
USP47-208ENST00000529813 RBM26Q5T8P6 1007 aaKnown RBP5.83□□□□□ -1.48
USP47-208ENST00000529813 LMBR1LQ6UX01 489 aa5.83□□□□□ -1.48
USP47-208ENST00000529813 GRAPLQ8TC17 118 aaPredicted RBP5.83□□□□□ -1.48
USP47-208ENST00000529813 GREM2Q9H772 168 aa5.83□□□□□ -1.48
USP47-208ENST00000529813 DBNDD1Q9H9R9 158 aa5.83□□□□□ -1.48
USP47-208ENST00000529813 KDM2BQ8NHM5 1336 aa5.83□□□□□ -1.48
USP47-208ENST00000529813 BBOX1O75936 387 aa5.83□□□□□ -1.48
USP47-208ENST00000529813 IARSP41252 1262 aaKnown RBP5.83□□□□□ -1.48
USP47-208ENST00000529813 FKBP4Q02790 459 aaKnown RBP eCLIP5.83□□□□□ -1.48
USP47-208ENST00000529813 FTSJ3Q8IY81 847 aaKnown RBP5.83□□□□□ -1.48
USP47-208ENST00000529813 MRPL50Q8N5N7 158 aaKnown RBP5.83□□□□□ -1.48
USP47-208ENST00000529813 CNNM1Q9NRU3 951 aa5.83□□□□□ -1.48
USP47-208ENST00000529813 COL5A3P25940 1745 aaPredicted RBP5.82□□□□□ -1.48
USP47-208ENST00000529813 ADAMTS7Q9UKP4 1686 aa5.82□□□□□ -1.48
USP47-208ENST00000529813 ADCY9O60503 1353 aa5.82□□□□□ -1.48
USP47-208ENST00000529813 CTSWP56202 376 aa5.82□□□□□ -1.48
USP47-208ENST00000529813 CCDC57Q2TAC2 916 aa5.82□□□□□ -1.48
USP47-208ENST00000529813 ZNF594Q96JF6 807 aaPredicted RBP5.82□□□□□ -1.48
USP47-208ENST00000529813 CRAMP1Q96RY5 1269 aa5.82□□□□□ -1.48
USP47-208ENST00000529813 CDC5LQ99459 802 aaKnown RBP5.82□□□□□ -1.48
USP47-208ENST00000529813 ZC3H12CQ9C0D7 883 aaKnown RBP5.82□□□□□ -1.48
USP47-208ENST00000529813 ITGA6P23229 1130 aa5.82□□□□□ -1.48
USP47-208ENST00000529813 PRELPP51888 382 aa5.82□□□□□ -1.48
USP47-208ENST00000529813 GRM1Q13255 1194 aa5.82□□□□□ -1.48
USP47-208ENST00000529813 IFIT5Q13325 482 aaKnown RBP5.82□□□□□ -1.48
USP47-208ENST00000529813 WASHC4Q2M389 1173 aa5.82□□□□□ -1.48
USP47-208ENST00000529813 SLC10A5Q5PT55 438 aa5.82□□□□□ -1.48
USP47-208ENST00000529813 ATP6V0A2Q9Y487 856 aa5.82□□□□□ -1.48
USP47-208ENST00000529813 N4BP2Q86UW6 1770 aaPredicted RBP5.82□□□□□ -1.48
USP47-208ENST00000529813 VIRMAQ69YN4 1812 aaKnown RBP5.81□□□□□ -1.48
USP47-208ENST00000529813 RNF123Q5XPI4 1314 aa5.81□□□□□ -1.48
USP47-208ENST00000529813 ANKRD18BA2A2Z9 1011 aa5.81□□□□□ -1.48
USP47-208ENST00000529813 SNAP23O00161 211 aa5.81□□□□□ -1.48
USP47-208ENST00000529813 GRM8O00222 908 aa5.81□□□□□ -1.48
USP47-208ENST00000529813 FRAT2O75474 233 aaPredicted RBP5.81□□□□□ -1.48
USP47-208ENST00000529813 LMOD1P29536 600 aaPredicted RBP5.81□□□□□ -1.48
USP47-208ENST00000529813 CRY2Q49AN0 593 aa5.81□□□□□ -1.48
USP47-208ENST00000529813 SIL1Q9H173 461 aa5.81□□□□□ -1.48
USP47-208ENST00000529813 JAG2Q9Y219 1238 aa5.81□□□□□ -1.48
USP47-208ENST00000529813 ZNF521Q96K83 1311 aa5.81□□□□□ -1.48
USP47-208ENST00000529813 TAF5LO75529 589 aa5.81□□□□□ -1.48
USP47-208ENST00000529813 NBPF7P0C2Y1 421 aaPredicted RBP5.81□□□□□ -1.48
USP47-208ENST00000529813 VEGFAP15692 232 aaPredicted RBP5.81□□□□□ -1.48
USP47-208ENST00000529813 HOXA10P31260 410 aaPredicted RBP5.81□□□□□ -1.48
USP47-208ENST00000529813 GPSM2P81274 684 aa5.81□□□□□ -1.48
USP47-208ENST00000529813 TRIM28Q13263 835 aaKnown RBP5.81□□□□□ -1.48
USP47-208ENST00000529813 BEND3Q5T5X7 828 aa5.81□□□□□ -1.48
USP47-208ENST00000529813 CC2D2BQ6DHV5 1058 aa5.81□□□□□ -1.48
USP47-208ENST00000529813 LDHAL6AQ6ZMR3 332 aa5.81□□□□□ -1.48
USP47-208ENST00000529813 TTLL11Q8NHH1 800 aa5.81□□□□□ -1.48
USP47-208ENST00000529813 GGA1Q9UJY5 639 aa5.81□□□□□ -1.48
USP47-208ENST00000529813 TNNQ9UQP3 1299 aa5.81□□□□□ -1.48
USP47-208ENST00000529813 UBR2Q8IWV8 1755 aa5.81□□□□□ -1.48
USP47-208ENST00000529813 IPO8O15397 1037 aaKnown RBP5.81□□□□□ -1.48
USP47-208ENST00000529813 UBTFL1P0CB47 393 aaPredicted RBP5.81□□□□□ -1.48
USP47-208ENST00000529813 PAXIP1Q6ZW49 1069 aaPredicted RBP5.81□□□□□ -1.48
USP47-208ENST00000529813 ITPRIPQ8IWB1 547 aa5.81□□□□□ -1.48
USP47-208ENST00000529813 SP8Q8IXZ3 490 aa5.81□□□□□ -1.48
USP47-208ENST00000529813 KLHDC4Q8TBB5 520 aa5.81□□□□□ -1.48
USP47-208ENST00000529813 API5Q9BZZ5 524 aaKnown RBP5.81□□□□□ -1.48
USP47-208ENST00000529813 SIPA1L3O60292 1781 aaPredicted RBP5.8□□□□□ -1.48
USP47-208ENST00000529813 GLTPD2A6NH11 291 aa5.8□□□□□ -1.48
USP47-208ENST00000529813 WTIPA6NIX2 430 aaPredicted RBP5.8□□□□□ -1.48
USP47-208ENST00000529813 RGL2O15211 777 aa5.8□□□□□ -1.48
USP47-208ENST00000529813 RARSP54136 660 aaKnown RBP5.8□□□□□ -1.48
USP47-208ENST00000529813 C1QTNF8P60827 252 aa5.8□□□□□ -1.48
USP47-208ENST00000529813 HTRA3P83110 453 aa5.8□□□□□ -1.48
USP47-208ENST00000529813 SF3B3Q15393 1217 aaKnown RBP5.8□□□□□ -1.48
USP47-208ENST00000529813 SUPT20HQ8NEM7 779 aa5.8□□□□□ -1.48
USP47-208ENST00000529813 C7orf43Q8WVR3 580 aa5.8□□□□□ -1.48
USP47-208ENST00000529813 SUCLG2Q96I99 432 aa5.8□□□□□ -1.48
USP47-208ENST00000529813 ZBTB12Q9Y330 459 aaPredicted RBP5.8□□□□□ -1.48
USP47-208ENST00000529813 ZNF541Q9H0D2 1346 aa5.8□□□□□ -1.48
USP47-208ENST00000529813 KLRG2A4D1S0 409 aaPredicted RBP5.8□□□□□ -1.48
USP47-208ENST00000529813 H7C1W4 665 aa5.8□□□□□ -1.48
USP47-208ENST00000529813 NCBP3Q53F19 620 aaKnown RBP5.8□□□□□ -1.48
USP47-208ENST00000529813 EPHA10Q5JZY3 1008 aa5.8□□□□□ -1.48
USP47-208ENST00000529813 EYA3Q99504 573 aa5.8□□□□□ -1.48
USP47-208ENST00000529813 ZNF408Q9H9D4 720 aa5.8□□□□□ -1.48
USP47-208ENST00000529813 IQSEC3Q9UPP2 1182 aaPredicted RBP5.8□□□□□ -1.48
USP47-208ENST00000529813 KDM3BQ7LBC6 1761 aa5.8□□□□□ -1.48
USP47-208ENST00000529813 APBB1O00213 710 aa5.79□□□□□ -1.48
USP47-208ENST00000529813 OS9Q13438 667 aaPredicted RBP5.79□□□□□ -1.48
USP47-208ENST00000529813 VPS37DQ86XT2 251 aa5.79□□□□□ -1.48
USP47-208ENST00000529813 BICC1Q9H694 974 aaKnown RBP5.79□□□□□ -1.48
USP47-208ENST00000529813 POLLQ9UGP5 575 aa5.79□□□□□ -1.48
USP47-208ENST00000529813 F8W031 263 aaPredicted RBP5.79□□□□□ -1.48
USP47-208ENST00000529813 ALDH1L1O75891 902 aa5.79□□□□□ -1.48
USP47-208ENST00000529813 POTEIP0CG38 1075 aa5.79□□□□□ -1.48
USP47-208ENST00000529813 POTEJP0CG39 1038 aa5.79□□□□□ -1.48
USP47-208ENST00000529813 ALDH1L2Q3SY69 923 aa5.79□□□□□ -1.48
USP47-208ENST00000529813 CIAPIN1Q6FI81 312 aa5.79□□□□□ -1.48
USP47-208ENST00000529813 C1orf115Q9H7X2 142 aa5.79□□□□□ -1.48
USP47-208ENST00000529813 CHAF1AQ13111 956 aaPredicted RBP5.79□□□□□ -1.48
USP47-208ENST00000529813 METTL24Q5JXM2 366 aa5.79□□□□□ -1.48
USP47-208ENST00000529813 ZKSCAN2Q63HK3 967 aa5.79□□□□□ -1.48
USP47-208ENST00000529813 TBC1D16Q8TBP0 767 aa5.79□□□□□ -1.48
USP47-208ENST00000529813 PUS3Q9BZE2 481 aaKnown RBP5.79□□□□□ -1.48
USP47-208ENST00000529813 KCNQ5Q9NR82 932 aa5.79□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms