RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 DNM1Q05193 864 aaKnown RBP5.4□□□□□ -1.54
CD44-229ENST00000528672 SFSWAPQ12872 951 aaKnown RBP5.4□□□□□ -1.54
CD44-229ENST00000528672 RGL4Q8IZJ4 473 aa5.4□□□□□ -1.54
CD44-229ENST00000528672 GALNT6Q8NCL4 622 aa5.4□□□□□ -1.54
CD44-229ENST00000528672 NEDD1Q8NHV4 660 aa5.4□□□□□ -1.54
CD44-229ENST00000528672 STIM2Q9P246 746 aa5.4□□□□□ -1.54
CD44-229ENST00000528672 WWC3Q9ULE0 1092 aa5.4□□□□□ -1.54
CD44-229ENST00000528672 UNCXA6NJT0 531 aa5.39□□□□□ -1.55
CD44-229ENST00000528672 KHNYNO15037 678 aaKnown RBP5.39□□□□□ -1.55
CD44-229ENST00000528672 GPR182O15218 404 aa5.39□□□□□ -1.55
CD44-229ENST00000528672 OIP5O43482 229 aa5.39□□□□□ -1.55
CD44-229ENST00000528672 MAPK1P28482 360 aa5.39□□□□□ -1.55
CD44-229ENST00000528672 IDH3AP50213 366 aa5.39□□□□□ -1.55
CD44-229ENST00000528672 NEUROD1Q13562 356 aa5.39□□□□□ -1.55
CD44-229ENST00000528672 AAMPQ13685 434 aa5.39□□□□□ -1.55
CD44-229ENST00000528672 C11orf91Q3C1V1 193 aa5.39□□□□□ -1.55
CD44-229ENST00000528672 BTLAQ7Z6A9 289 aa5.39□□□□□ -1.55
CD44-229ENST00000528672 ACDQ96AP0 544 aa5.39□□□□□ -1.55
CD44-229ENST00000528672 AMOTL2Q9Y2J4 779 aa5.39□□□□□ -1.55
CD44-229ENST00000528672 MICAL2O94851 1124 aa5.38□□□□□ -1.55
CD44-229ENST00000528672 NPR3P17342 541 aa5.38□□□□□ -1.55
CD44-229ENST00000528672 TMC7Q7Z402 723 aa5.38□□□□□ -1.55
CD44-229ENST00000528672 Q8N3U1 123 aa5.38□□□□□ -1.55
CD44-229ENST00000528672 NUDT16Q96DE0 195 aaKnown RBP5.38□□□□□ -1.55
CD44-229ENST00000528672 BRD7Q9NPI1 651 aa5.38□□□□□ -1.55
CD44-229ENST00000528672 ANKRD33BA6NCL7 494 aa5.37□□□□□ -1.55
CD44-229ENST00000528672 PIK3R2O00459 728 aa5.37□□□□□ -1.55
CD44-229ENST00000528672 C2CD2LO14523 706 aa5.37□□□□□ -1.55
CD44-229ENST00000528672 SIN3BO75182 1162 aa5.37□□□□□ -1.55
CD44-229ENST00000528672 PDGFAP04085 211 aa5.37□□□□□ -1.55
CD44-229ENST00000528672 EPXP11678 715 aa5.37□□□□□ -1.55
CD44-229ENST00000528672 CTBSQ01459 385 aa5.37□□□□□ -1.55
CD44-229ENST00000528672 ORC1Q13415 861 aa5.37□□□□□ -1.55
CD44-229ENST00000528672 USPL1Q5W0Q7 1092 aa5.37□□□□□ -1.55
CD44-229ENST00000528672 KRT25Q7Z3Z0 450 aa5.37□□□□□ -1.55
CD44-229ENST00000528672 CMTR1Q8N1G2 835 aaKnown RBP5.37□□□□□ -1.55
CD44-229ENST00000528672 CEP63Q96MT8 703 aa5.37□□□□□ -1.55
CD44-229ENST00000528672 PSMG3-AS1Q96PY0 264 aa5.37□□□□□ -1.55
CD44-229ENST00000528672 EGFL7Q9UHF1 273 aa5.37□□□□□ -1.55
CD44-229ENST00000528672 FOXD3Q9UJU5 478 aaPredicted RBP5.37□□□□□ -1.55
CD44-229ENST00000528672 KCNH4Q9UQ05 1017 aa5.37□□□□□ -1.55
CD44-229ENST00000528672 ADARB2-AS1A8MUL3 147 aa5.36□□□□□ -1.55
CD44-229ENST00000528672 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.36□□□□□ -1.55
CD44-229ENST00000528672 CYP2E1P05181 493 aaPredicted RBP5.36□□□□□ -1.55
CD44-229ENST00000528672 CD33P20138 364 aa5.36□□□□□ -1.55
CD44-229ENST00000528672 INPP5BP32019 993 aa5.36□□□□□ -1.55
CD44-229ENST00000528672 BAG6P46379 1132 aa5.36□□□□□ -1.55
CD44-229ENST00000528672 ARSDP51689 593 aa5.36□□□□□ -1.55
CD44-229ENST00000528672 ALYREFQ86V81 257 aaKnown RBP5.36□□□□□ -1.55
CD44-229ENST00000528672 NPAS4Q8IUM7 802 aa5.36□□□□□ -1.55
CD44-229ENST00000528672 TNFRSF25Q93038 417 aa5.36□□□□□ -1.55
CD44-229ENST00000528672 FAM161BQ96MY7 647 aa5.36□□□□□ -1.55
CD44-229ENST00000528672 SLC30A3Q99726 388 aa5.36□□□□□ -1.55
CD44-229ENST00000528672 MDFIQ99750 246 aa5.36□□□□□ -1.55
CD44-229ENST00000528672 FAM13BQ9NYF5 915 aa5.36□□□□□ -1.55
CD44-229ENST00000528672 KCNMB2Q9Y691 235 aa5.36□□□□□ -1.55
CD44-229ENST00000528672 KRBA1A5PL33 1030 aa5.35□□□□□ -1.55
CD44-229ENST00000528672 POLR3DP05423 398 aaPredicted RBP5.35□□□□□ -1.55
CD44-229ENST00000528672 P4HBP07237 508 aaKnown RBP5.35□□□□□ -1.55
CD44-229ENST00000528672 BRD2P25440 801 aaKnown RBP5.35□□□□□ -1.55
CD44-229ENST00000528672 SPEM2Q0P670 501 aa5.35□□□□□ -1.55
CD44-229ENST00000528672 C8orf34Q49A92 452 aa5.35□□□□□ -1.55
CD44-229ENST00000528672 PI16Q6UXB8 463 aa5.35□□□□□ -1.55
CD44-229ENST00000528672 KRTAP9-2Q9BYQ4 174 aa5.35□□□□□ -1.55
CD44-229ENST00000528672 NIF3L1Q9GZT8 377 aa5.35□□□□□ -1.55
CD44-229ENST00000528672 TMEM63CQ9P1W3 806 aa5.35□□□□□ -1.55
CD44-229ENST00000528672 ZFATQ9P243 1243 aa5.35□□□□□ -1.55
CD44-229ENST00000528672 GGA1Q9UJY5 639 aa5.35□□□□□ -1.55
CD44-229ENST00000528672 PRR12Q9ULL5 1215 aa5.35□□□□□ -1.55
CD44-229ENST00000528672 TTBK1Q5TCY1 1321 aaPredicted RBP5.34□□□□□ -1.55
CD44-229ENST00000528672 TRPA1O75762 1119 aa5.34□□□□□ -1.55
CD44-229ENST00000528672 SASH3O75995 380 aa5.34□□□□□ -1.55
CD44-229ENST00000528672 MAP3K6O95382 1288 aa5.34□□□□□ -1.55
CD44-229ENST00000528672 EGFRP00533 1210 aa5.34□□□□□ -1.55
CD44-229ENST00000528672 ACPPP15309 386 aa5.34□□□□□ -1.55
CD44-229ENST00000528672 SF3B2Q13435 895 aaKnown RBP5.34□□□□□ -1.55
CD44-229ENST00000528672 PCSK7Q16549 785 aa5.34□□□□□ -1.55
CD44-229ENST00000528672 ABTB2Q8N961 1025 aa5.34□□□□□ -1.55
CD44-229ENST00000528672 EDARADDQ8WWZ3 215 aa5.34□□□□□ -1.55
CD44-229ENST00000528672 CNTN3Q9P232 1028 aa5.34□□□□□ -1.55
CD44-229ENST00000528672 RTCBQ9Y3I0 505 aaKnown RBP5.34□□□□□ -1.55
CD44-229ENST00000528672 ELOA3CA0A087WX78 387 aaPredicted RBP5.33□□□□□ -1.56
CD44-229ENST00000528672 KRTAP9-6A0A140TA67 174 aa5.33□□□□□ -1.56
CD44-229ENST00000528672 ELOA3DA6NLF2 546 aaPredicted RBP5.33□□□□□ -1.56
CD44-229ENST00000528672 FAM13AO94988 1023 aa5.33□□□□□ -1.56
CD44-229ENST00000528672 FURINP09958 794 aa5.33□□□□□ -1.56
CD44-229ENST00000528672 TARSP26639 723 aaKnown RBP5.33□□□□□ -1.56
CD44-229ENST00000528672 ELOA3BQ3SY89 546 aa5.33□□□□□ -1.56
CD44-229ENST00000528672 SYT9Q86SS6 491 aa5.33□□□□□ -1.56
CD44-229ENST00000528672 ELOA3Q8NG57 546 aa5.33□□□□□ -1.56
CD44-229ENST00000528672 TMC1Q8TDI8 760 aa5.33□□□□□ -1.56
CD44-229ENST00000528672 PRDM6Q9NQX0 595 aa5.33□□□□□ -1.56
CD44-229ENST00000528672 DCTN4Q9UJW0 460 aa5.33□□□□□ -1.56
CD44-229ENST00000528672 NEURL1BA8MQ27 555 aa5.32□□□□□ -1.56
CD44-229ENST00000528672 SNRPNP63162 240 aaKnown RBP5.32□□□□□ -1.56
CD44-229ENST00000528672 CCINQ13939 588 aa5.32□□□□□ -1.56
CD44-229ENST00000528672 DSC3Q14574 896 aa5.32□□□□□ -1.56
CD44-229ENST00000528672 COL13A1Q5TAT6 717 aaPredicted RBP5.32□□□□□ -1.56
CD44-229ENST00000528672 ADAMTSL4Q6UY14 1074 aa5.32□□□□□ -1.56
CD44-229ENST00000528672 FCHSD1Q86WN1 690 aa5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms