RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 FBXO3Q9UK99 471 aa25.16■■□□□ 1.62
VPS28-209ENST00000528142 ZNF831Q5JPB2 1677 aa25.16■■□□□ 1.62
VPS28-209ENST00000528142 ANKRD36CQ5JPF3 1778 aa25.16■■□□□ 1.62
VPS28-209ENST00000528142 IL17RAQ96F46 866 aa25.16■■□□□ 1.62
VPS28-209ENST00000528142 KCNQ4P56696 695 aa25.15■■□□□ 1.62
VPS28-209ENST00000528142 DBNDD2Q9BQY9 259 aa25.15■■□□□ 1.62
VPS28-209ENST00000528142 PUS3Q9BZE2 481 aaKnown RBP25.15■■□□□ 1.62
VPS28-209ENST00000528142 TRMT112Q9UI30 125 aaKnown RBP25.15■■□□□ 1.62
VPS28-209ENST00000528142 TTLL11Q8NHH1 800 aa25.14■■□□□ 1.62
VPS28-209ENST00000528142 NUP98P52948 1817 aa25.14■■□□□ 1.62
VPS28-209ENST00000528142 IRS4O14654 1257 aaPredicted RBP25.14■■□□□ 1.61
VPS28-209ENST00000528142 SPRYD3Q8NCJ5 442 aa25.14■■□□□ 1.61
VPS28-209ENST00000528142 LINC00116Q8NCU8 138 aa25.14■■□□□ 1.61
VPS28-209ENST00000528142 AK9Q5TCS8 1911 aa25.14■■□□□ 1.61
VPS28-209ENST00000528142 K7ELQ4 463 aaPredicted RBP25.13■■□□□ 1.61
VPS28-209ENST00000528142 MCCP23508 829 aa25.13■■□□□ 1.61
VPS28-209ENST00000528142 RXRBP28702 533 aa25.13■■□□□ 1.61
VPS28-209ENST00000528142 CWC27Q6UX04 472 aaKnown RBP25.13■■□□□ 1.61
VPS28-209ENST00000528142 DIAPH3Q9NSV4 1193 aa25.13■■□□□ 1.61
VPS28-209ENST00000528142 MYH14Q7Z406 1995 aaKnown RBP25.13■■□□□ 1.61
VPS28-209ENST00000528142 CTSWP56202 376 aa25.12■■□□□ 1.61
VPS28-209ENST00000528142 ANAPC15P60006 121 aa25.12■■□□□ 1.61
VPS28-209ENST00000528142 IFIT5Q13325 482 aaKnown RBP25.12■■□□□ 1.61
VPS28-209ENST00000528142 LSG1Q9H089 658 aaKnown RBP25.12■■□□□ 1.61
VPS28-209ENST00000528142 COL5A3P25940 1745 aaPredicted RBP25.12■■□□□ 1.61
VPS28-209ENST00000528142 RUFY2Q8WXA3 655 aa25.12■■□□□ 1.61
VPS28-209ENST00000528142 SUSD4Q5VX71 490 aa25.11■■□□□ 1.61
VPS28-209ENST00000528142 CCDC85AQ96PX6 553 aaPredicted RBP25.11■■□□□ 1.61
VPS28-209ENST00000528142 PALD1Q9ULE6 856 aa25.11■■□□□ 1.61
VPS28-209ENST00000528142 RAD50Q92878 1312 aa25.1■■□□□ 1.61
VPS28-209ENST00000528142 HIP1O00291 1037 aa25.1■■□□□ 1.61
VPS28-209ENST00000528142 PDE8AO60658 829 aa25.1■■□□□ 1.61
VPS28-209ENST00000528142 HSPA4P34932 840 aa25.1■■□□□ 1.61
VPS28-209ENST00000528142 ZNF609O15014 1411 aa25.1■■□□□ 1.61
VPS28-209ENST00000528142 DDIT3P35638 169 aa25.09■■□□□ 1.61
VPS28-209ENST00000528142 NFKBIBQ15653 356 aa25.09■■□□□ 1.61
VPS28-209ENST00000528142 GREM2Q9H772 168 aa25.09■■□□□ 1.61
VPS28-209ENST00000528142 CNTNAP4Q9C0A0 1308 aa25.09■■□□□ 1.61
VPS28-209ENST00000528142 TIMM10P62072 90 aa25.09■■□□□ 1.61
VPS28-209ENST00000528142 FAM196AQ6ZSG2 479 aa25.09■■□□□ 1.61
VPS28-209ENST00000528142 AK7Q96M32 723 aa25.09■■□□□ 1.61
VPS28-209ENST00000528142 HAUS7Q99871 368 aa25.09■■□□□ 1.61
VPS28-209ENST00000528142 CEP126Q9P2H0 1117 aa25.09■■□□□ 1.61
VPS28-209ENST00000528142 LY75O60449 1722 aa25.09■■□□□ 1.61
VPS28-209ENST00000528142 ITGA6P23229 1130 aa25.08■■□□□ 1.61
VPS28-209ENST00000528142 PARP10Q53GL7 1025 aa25.08■■□□□ 1.61
VPS28-209ENST00000528142 BCL11BQ9C0K0 894 aaPredicted RBP25.08■■□□□ 1.61
VPS28-209ENST00000528142 SNRKQ9NRH2 765 aa25.08■■□□□ 1.61
VPS28-209ENST00000528142 NEUROD6Q96NK8 337 aa25.07■■□□□ 1.6
VPS28-209ENST00000528142 KIAA1211Q6ZU35 1233 aa25.07■■□□□ 1.6
VPS28-209ENST00000528142 FSD1Q9BTV5 496 aa25.07■■□□□ 1.6
VPS28-209ENST00000528142 UTP14AQ9BVJ6 771 aaKnown RBP25.07■■□□□ 1.6
VPS28-209ENST00000528142 SH3TC1Q8TE82 1336 aa25.06■■□□□ 1.6
VPS28-209ENST00000528142 A0A1B0GUL7 405 aa25.06■■□□□ 1.6
VPS28-209ENST00000528142 ST18O60284 1047 aa25.06■■□□□ 1.6
VPS28-209ENST00000528142 TAF7LQ5H9L4 462 aa25.06■■□□□ 1.6
VPS28-209ENST00000528142 EDC3Q96F86 508 aaKnown RBP25.06■■□□□ 1.6
VPS28-209ENST00000528142 RIPOR2Q9Y4F9 1068 aa25.06■■□□□ 1.6
VPS28-209ENST00000528142 ANKRD18BA2A2Z9 1011 aa25.05■■□□□ 1.6
VPS28-209ENST00000528142 TRIM37O94972 964 aa25.05■■□□□ 1.6
VPS28-209ENST00000528142 NMIQ13287 307 aaPredicted RBP25.05■■□□□ 1.6
VPS28-209ENST00000528142 RC3H1Q5TC82 1133 aaKnown RBP25.05■■□□□ 1.6
VPS28-209ENST00000528142 FAM227BQ96M60 508 aa25.05■■□□□ 1.6
VPS28-209ENST00000528142 CHMP5Q9NZZ3 219 aa25.05■■□□□ 1.6
VPS28-209ENST00000528142 CLEC4GQ6UXB4 293 aa25.05■■□□□ 1.6
VPS28-209ENST00000528142 NIP7Q9Y221 180 aaKnown RBP eCLIP25.04■■□□□ 1.6
VPS28-209ENST00000528142 AKAP2Q9Y2D5 859 aa25.04■■□□□ 1.6
VPS28-209ENST00000528142 NTSR2O95665 410 aa25.03■■□□□ 1.6
VPS28-209ENST00000528142 ZNF652Q9Y2D9 606 aa25.03■■□□□ 1.6
VPS28-209ENST00000528142 RFX7Q2KHR2 1363 aa25.03■■□□□ 1.6
VPS28-209ENST00000528142 RGL2O15211 777 aa25.02■■□□□ 1.6
VPS28-209ENST00000528142 PTH1RQ03431 593 aa25.02■■□□□ 1.6
VPS28-209ENST00000528142 LDHAL6AQ6ZMR3 332 aa25.02■■□□□ 1.6
VPS28-209ENST00000528142 NDUFB9Q9Y6M9 179 aa25.02■■□□□ 1.6
VPS28-209ENST00000528142 A0A0D9SFI3 127 aa25.02■■□□□ 1.6
VPS28-209ENST00000528142 RIC1Q4ADV7 1423 aa25.02■■□□□ 1.6
VPS28-209ENST00000528142 HCLS1P14317 486 aaPredicted RBP25.01■■□□□ 1.59
VPS28-209ENST00000528142 NEK4P51957 841 aa25.01■■□□□ 1.59
VPS28-209ENST00000528142 PPIL4Q8WUA2 492 aaKnown RBP eCLIP25.01■■□□□ 1.59
VPS28-209ENST00000528142 DNAJC2Q99543 621 aaKnown RBP25.01■■□□□ 1.59
VPS28-209ENST00000528142 TAF1LQ8IZX4 1826 aa25.01■■□□□ 1.59
VPS28-209ENST00000528142 SMIM5Q71RC9 77 aa25■■□□□ 1.59
VPS28-209ENST00000528142 LRRC4BQ9NT99 713 aa25■■□□□ 1.59
VPS28-209ENST00000528142 MED23Q9ULK4 1368 aa25■■□□□ 1.59
VPS28-209ENST00000528142 FAM177BA6PVY3 158 aa25■■□□□ 1.59
VPS28-209ENST00000528142 RPS6KA4O75676 772 aa25■■□□□ 1.59
VPS28-209ENST00000528142 IL27Q8NEV9 243 aa25■■□□□ 1.59
VPS28-209ENST00000528142 KCNB2Q92953 911 aa25■■□□□ 1.59
VPS28-209ENST00000528142 CCNL1Q9UK58 526 aaPredicted RBP25■■□□□ 1.59
VPS28-209ENST00000528142 SNX14Q9Y5W7 946 aa25■■□□□ 1.59
VPS28-209ENST00000528142 BCORQ6W2J9 1755 aa25■■□□□ 1.59
VPS28-209ENST00000528142 CCDC171Q6TFL3 1326 aa24.99■■□□□ 1.59
VPS28-209ENST00000528142 FRAT2O75474 233 aaPredicted RBP24.99■■□□□ 1.59
VPS28-209ENST00000528142 VGLL2Q8N8G2 317 aa24.99■■□□□ 1.59
VPS28-209ENST00000528142 KBTBD3Q8NAB2 608 aa24.99■■□□□ 1.59
VPS28-209ENST00000528142 XAGE2Q96GT9 111 aa24.99■■□□□ 1.59
VPS28-209ENST00000528142 CIZ1Q9ULV3 898 aaPredicted RBP24.99■■□□□ 1.59
VPS28-209ENST00000528142 METTL24Q5JXM2 366 aa24.98■■□□□ 1.59
VPS28-209ENST00000528142 TICAM2Q86XR7 235 aa24.98■■□□□ 1.59
VPS28-209ENST00000528142 RASEFQ8IZ41 740 aa24.98■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms