RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 TARSP26639 723 aaKnown RBP8.88□□□□□ -0.99
CD44-223ENST00000526553 ADH7P40394 386 aa8.88□□□□□ -0.99
CD44-223ENST00000526553 MARSP56192 900 aaKnown RBP8.88□□□□□ -0.99
CD44-223ENST00000526553 KRT25Q7Z3Z0 450 aa8.88□□□□□ -0.99
CD44-223ENST00000526553 ANO2Q9NQ90 1003 aa8.88□□□□□ -0.99
CD44-223ENST00000526553 H3BRB1 525 aa8.87□□□□□ -0.99
CD44-223ENST00000526553 AMPD1P23109 780 aa8.87□□□□□ -0.99
CD44-223ENST00000526553 MZF1P28698 734 aaPredicted RBP8.87□□□□□ -0.99
CD44-223ENST00000526553 KANK3Q6NY19 840 aa8.87□□□□□ -0.99
CD44-223ENST00000526553 NLRP13Q86W25 1043 aa8.87□□□□□ -0.99
CD44-223ENST00000526553 GLYCTKQ8IVS8 523 aa8.87□□□□□ -0.99
CD44-223ENST00000526553 EDEM1Q92611 657 aa8.87□□□□□ -0.99
CD44-223ENST00000526553 NUDT16Q96DE0 195 aaKnown RBP8.87□□□□□ -0.99
CD44-223ENST00000526553 UBE2OQ9C0C9 1292 aaKnown RBP8.87□□□□□ -0.99
CD44-223ENST00000526553 TUT1Q9H6E5 874 aaKnown RBP8.87□□□□□ -0.99
CD44-223ENST00000526553 PDGFAP04085 211 aa8.86□□□□□ -0.99
CD44-223ENST00000526553 PCSK2P16519 638 aa8.86□□□□□ -0.99
CD44-223ENST00000526553 KCNA1Q09470 495 aa8.86□□□□□ -0.99
CD44-223ENST00000526553 PCSK7Q16549 785 aa8.86□□□□□ -0.99
CD44-223ENST00000526553 DHX32Q7L7V1 743 aaKnown RBP8.86□□□□□ -0.99
CD44-223ENST00000526553 SCARF2Q96GP6 870 aaPredicted RBP8.86□□□□□ -0.99
CD44-223ENST00000526553 SLC6A14Q9UN76 642 aa8.86□□□□□ -0.99
CD44-223ENST00000526553 RNF225M0QZC1 329 aaPredicted RBP8.85□□□□□ -0.99
CD44-223ENST00000526553 HOXB4P17483 251 aaPredicted RBP8.85□□□□□ -0.99
CD44-223ENST00000526553 DGKGP49619 791 aa8.85□□□□□ -0.99
CD44-223ENST00000526553 DNM1Q05193 864 aaKnown RBP8.85□□□□□ -0.99
CD44-223ENST00000526553 PODNQ7Z5L7 613 aa8.85□□□□□ -0.99
CD44-223ENST00000526553 TRPM4Q8TD43 1214 aa8.85□□□□□ -0.99
CD44-223ENST00000526553 DNAJB12Q9NXW2 375 aaKnown RBP8.85□□□□□ -0.99
CD44-223ENST00000526553 TLR7Q9NYK1 1049 aaKnown RBP8.85□□□□□ -0.99
CD44-223ENST00000526553 FZD6O60353 706 aa8.84□□□□□ -0.99
CD44-223ENST00000526553 HOXD8P13378 290 aaPredicted RBP8.84□□□□□ -0.99
CD44-223ENST00000526553 SOX18P35713 384 aa8.84□□□□□ -0.99
CD44-223ENST00000526553 NRLP54845 237 aa8.84□□□□□ -0.99
CD44-223ENST00000526553 GPLD1P80108 840 aa8.84□□□□□ -0.99
CD44-223ENST00000526553 TBC1D8BQ0IIM8 1120 aa8.84□□□□□ -0.99
CD44-223ENST00000526553 ECM1Q16610 540 aa8.84□□□□□ -0.99
CD44-223ENST00000526553 PDE12Q6L8Q7 609 aaKnown RBP8.84□□□□□ -0.99
CD44-223ENST00000526553 PATL2C9JE40 543 aaKnown RBP8.83□□□□□ -1
CD44-223ENST00000526553 MMP20O60882 483 aa8.83□□□□□ -1
CD44-223ENST00000526553 USP5P45974 858 aa8.83□□□□□ -1
CD44-223ENST00000526553 SNRPNP63162 240 aaKnown RBP8.83□□□□□ -1
CD44-223ENST00000526553 AAMPQ13685 434 aa8.83□□□□□ -1
CD44-223ENST00000526553 XKR5Q6UX68 686 aa8.83□□□□□ -1
CD44-223ENST00000526553 BEND7Q8N7W2 519 aaPredicted RBP8.83□□□□□ -1
CD44-223ENST00000526553 IGFLR1Q9H665 355 aa8.83□□□□□ -1
CD44-223ENST00000526553 RRAGCQ9HB90 399 aa8.83□□□□□ -1
CD44-223ENST00000526553 MKL2Q9ULH7 1088 aa8.83□□□□□ -1
CD44-223ENST00000526553 POLIQ9UNA4 740 aa8.83□□□□□ -1
CD44-223ENST00000526553 STARD13Q9Y3M8 1113 aa8.83□□□□□ -1
CD44-223ENST00000526553 SOWAHDA6NJG2 315 aa8.82□□□□□ -1
CD44-223ENST00000526553 PHF20L1A8MW92 1017 aa8.82□□□□□ -1
CD44-223ENST00000526553 PSAPP07602 524 aa8.82□□□□□ -1
CD44-223ENST00000526553 PLAURQ03405 335 aa8.82□□□□□ -1
CD44-223ENST00000526553 PIK3R2O00459 728 aa8.81□□□□□ -1
CD44-223ENST00000526553 PDIA4P13667 645 aaKnown RBP8.81□□□□□ -1
CD44-223ENST00000526553 ARHGAP4P98171 946 aa8.81□□□□□ -1
CD44-223ENST00000526553 EHHADHQ08426 723 aa8.81□□□□□ -1
CD44-223ENST00000526553 ZNF438Q7Z4V0 828 aa8.81□□□□□ -1
CD44-223ENST00000526553 TTC16Q8NEE8 873 aa8.81□□□□□ -1
CD44-223ENST00000526553 GGNBP2Q9H3C7 697 aa8.81□□□□□ -1
CD44-223ENST00000526553 PRDM6Q9NQX0 595 aa8.81□□□□□ -1
CD44-223ENST00000526553 ABI2Q9NYB9 513 aaPredicted RBP8.81□□□□□ -1
CD44-223ENST00000526553 CNTNAP5Q8WYK1 1306 aa8.8□□□□□ -1
CD44-223ENST00000526553 ZBTB42B2RXF5 422 aa8.8□□□□□ -1
CD44-223ENST00000526553 ALBP02768 609 aa8.8□□□□□ -1
CD44-223ENST00000526553 KCNMA1Q12791 1236 aa8.8□□□□□ -1
CD44-223ENST00000526553 LINC00114Q6XXX2 140 aa8.8□□□□□ -1
CD44-223ENST00000526553 C20orf204Q6ZNR8 217 aa8.8□□□□□ -1
CD44-223ENST00000526553 GJD3Q8N144 294 aa8.8□□□□□ -1
CD44-223ENST00000526553 OR13H1Q8NG92 308 aa8.8□□□□□ -1
CD44-223ENST00000526553 ELP3Q9H9T3 547 aa8.8□□□□□ -1
CD44-223ENST00000526553 CCDC87Q9NVE4 849 aa8.8□□□□□ -1
CD44-223ENST00000526553 NAGPAQ9UK23 515 aa8.8□□□□□ -1
CD44-223ENST00000526553 M0R082 166 aa8.79□□□□□ -1
CD44-223ENST00000526553 GNB5O14775 395 aa8.79□□□□□ -1
CD44-223ENST00000526553 C8orf34Q49A92 452 aa8.79□□□□□ -1
CD44-223ENST00000526553 TTC39BQ5VTQ0 682 aaPredicted RBP8.79□□□□□ -1
CD44-223ENST00000526553 FAM35AQ86V20 835 aa8.79□□□□□ -1
CD44-223ENST00000526553 MICALL1Q8N3F8 863 aa8.79□□□□□ -1
CD44-223ENST00000526553 ZNF417Q8TAU3 575 aa8.79□□□□□ -1
CD44-223ENST00000526553 ZNF587Q96SQ5 575 aaPredicted RBP8.79□□□□□ -1
CD44-223ENST00000526553 FRRS1LQ9P0K9 344 aa8.79□□□□□ -1
CD44-223ENST00000526553 IVNS1ABPQ9Y6Y0 642 aa8.79□□□□□ -1
CD44-223ENST00000526553 NDUFB5O43674 189 aa8.78□□□□□ -1
CD44-223ENST00000526553 TMEM63CQ9P1W3 806 aa8.78□□□□□ -1
CD44-223ENST00000526553 BRPF3Q9ULD4 1205 aa8.78□□□□□ -1
CD44-223ENST00000526553 CPB1P15086 417 aa8.77□□□□□ -1.01
CD44-223ENST00000526553 MLLT1Q03111 559 aaPredicted RBP8.77□□□□□ -1.01
CD44-223ENST00000526553 PSAPL1Q6NUJ1 521 aa8.77□□□□□ -1.01
CD44-223ENST00000526553 LOC102724428A0A0B4J2F2 783 aa8.76□□□□□ -1.01
CD44-223ENST00000526553 A6NHS1 94 aa8.76□□□□□ -1.01
CD44-223ENST00000526553 LILRB5O75023 590 aa8.76□□□□□ -1.01
CD44-223ENST00000526553 SIK1P57059 783 aa8.76□□□□□ -1.01
CD44-223ENST00000526553 NSUN5Q96P11 429 aaKnown RBP8.76□□□□□ -1.01
CD44-223ENST00000526553 CITED4Q96RK1 184 aa8.76□□□□□ -1.01
CD44-223ENST00000526553 LPIN3Q9BQK8 851 aa8.76□□□□□ -1.01
CD44-223ENST00000526553 KIF4AO95239 1232 aa8.75□□□□□ -1.01
CD44-223ENST00000526553 EIF2AK2P19525 551 aaKnown RBP8.75□□□□□ -1.01
CD44-223ENST00000526553 IRS1P35568 1242 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms