RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-222ENST00000526025 CCDC152Q4G0S7 254 aa26.13■■□□□ 1.77
CD44-222ENST00000526025 DALRD3Q5D0E6 543 aaKnown RBP26.13■■□□□ 1.77
CD44-222ENST00000526025 ZNF622Q969S3 477 aaKnown RBP eCLIP26.13■■□□□ 1.77
CD44-222ENST00000526025 RLBP1P12271 317 aa26.12■■□□□ 1.77
CD44-222ENST00000526025 CSF1RP07333 972 aa26.11■■□□□ 1.77
CD44-222ENST00000526025 GNAI3P08754 354 aa26.11■■□□□ 1.77
CD44-222ENST00000526025 TTLL11Q8NHH1 800 aa26.11■■□□□ 1.77
CD44-222ENST00000526025 TAF1P21675 1872 aa26.11■■□□□ 1.77
CD44-222ENST00000526025 RRP1P56182 461 aaKnown RBP26.1■■□□□ 1.77
CD44-222ENST00000526025 FOXO4P98177 505 aa26.1■■□□□ 1.77
CD44-222ENST00000526025 DDX46Q7L014 1031 aaKnown RBP26.1■■□□□ 1.77
CD44-222ENST00000526025 PLIN1O60240 522 aa26.09■■□□□ 1.77
CD44-222ENST00000526025 UBTFL1P0CB47 393 aaPredicted RBP26.09■■□□□ 1.77
CD44-222ENST00000526025 RABL6Q3YEC7 729 aaPredicted RBP26.08■■□□□ 1.77
CD44-222ENST00000526025 PRPF40BQ6NWY9 871 aaKnown RBP26.08■■□□□ 1.77
CD44-222ENST00000526025 TMC4Q7Z404 712 aa26.08■■□□□ 1.77
CD44-222ENST00000526025 PANK1Q8TE04 598 aa26.08■■□□□ 1.77
CD44-222ENST00000526025 KAZALD1Q96I82 304 aa26.08■■□□□ 1.77
CD44-222ENST00000526025 SUCLG2Q96I99 432 aa26.08■■□□□ 1.77
CD44-222ENST00000526025 LRRC37AA6NMS7 1700 aa26.08■■□□□ 1.76
CD44-222ENST00000526025 GRAPQ13588 217 aa26.07■■□□□ 1.76
CD44-222ENST00000526025 ITPRIPQ8IWB1 547 aa26.07■■□□□ 1.76
CD44-222ENST00000526025 GRAPLQ8TC17 118 aaPredicted RBP26.07■■□□□ 1.76
CD44-222ENST00000526025 MEIS3Q99687 375 aa26.07■■□□□ 1.76
CD44-222ENST00000526025 BBOX1O75936 387 aa26.06■■□□□ 1.76
CD44-222ENST00000526025 MVPQ14764 893 aaKnown RBP26.06■■□□□ 1.76
CD44-222ENST00000526025 SOGA3Q5TF21 947 aa26.06■■□□□ 1.76
CD44-222ENST00000526025 BCS1LQ9Y276 419 aa26.06■■□□□ 1.76
CD44-222ENST00000526025 FER1L6Q2WGJ9 1857 aa26.05■■□□□ 1.76
CD44-222ENST00000526025 EPHA10Q5JZY3 1008 aa26.05■■□□□ 1.76
CD44-222ENST00000526025 DDX19BQ9UMR2 479 aa26.05■■□□□ 1.76
CD44-222ENST00000526025 DCAF8L1A6NGE4 600 aa26.04■■□□□ 1.76
CD44-222ENST00000526025 GRIN3BO60391 1043 aa26.04■■□□□ 1.76
CD44-222ENST00000526025 YBX3P16989 372 aaKnown RBP eCLIP26.04■■□□□ 1.76
CD44-222ENST00000526025 GPR162Q16538 588 aa26.04■■□□□ 1.76
CD44-222ENST00000526025 CC2D2BQ6DHV5 1058 aa26.04■■□□□ 1.76
CD44-222ENST00000526025 C7orf43Q8WVR3 580 aa26.04■■□□□ 1.76
CD44-222ENST00000526025 CDC5LQ99459 802 aaKnown RBP26.04■■□□□ 1.76
CD44-222ENST00000526025 CHMP4BQ9H444 224 aaKnown RBP26.04■■□□□ 1.76
CD44-222ENST00000526025 GREM2Q9H772 168 aa26.04■■□□□ 1.76
CD44-222ENST00000526025 SPEF2Q9C093 1822 aa26.03■■□□□ 1.76
CD44-222ENST00000526025 ZBTB7BO15156 539 aaPredicted RBP26.03■■□□□ 1.76
CD44-222ENST00000526025 GRIPAP1Q4V328 841 aa26.03■■□□□ 1.76
CD44-222ENST00000526025 LMBR1LQ6UX01 489 aa26.03■■□□□ 1.76
CD44-222ENST00000526025 ANKRD44Q8N8A2 993 aa26.03■■□□□ 1.76
CD44-222ENST00000526025 BICC1Q9H694 974 aaKnown RBP26.03■■□□□ 1.76
CD44-222ENST00000526025 PPEF1O14829 653 aaPredicted RBP26.02■■□□□ 1.76
CD44-222ENST00000526025 FAM161AQ3B820 660 aa26.02■■□□□ 1.76
CD44-222ENST00000526025 COL4A1P02462 1669 aa26.02■■□□□ 1.76
CD44-222ENST00000526025 GNAI2P04899 355 aa26.01■■□□□ 1.75
CD44-222ENST00000526025 ITGA6P23229 1130 aa26.01■■□□□ 1.75
CD44-222ENST00000526025 RPS8P62241 208 aaKnown RBP26.01■■□□□ 1.75
CD44-222ENST00000526025 GOLGB1Q14789 3259 aaKnown RBP26.01■■□□□ 1.75
CD44-222ENST00000526025 SEC31BQ9NQW1 1179 aa26.01■■□□□ 1.75
CD44-222ENST00000526025 SNED1Q8TER0 1413 aa26■■□□□ 1.75
CD44-222ENST00000526025 IFIT5Q13325 482 aaKnown RBP26■■□□□ 1.75
CD44-222ENST00000526025 C20orf194Q5TEA3 1177 aa26■■□□□ 1.75
CD44-222ENST00000526025 CELF1Q92879 486 aaKnown RBP26■■□□□ 1.75
CD44-222ENST00000526025 COG6Q9Y2V7 657 aa26■■□□□ 1.75
CD44-222ENST00000526025 ATP6V0A2Q9Y487 856 aa26■■□□□ 1.75
CD44-222ENST00000526025 LRRFIP2Q9Y608 721 aaKnown RBP26■■□□□ 1.75
CD44-222ENST00000526025 ANKRD18BA2A2Z9 1011 aa25.99■■□□□ 1.75
CD44-222ENST00000526025 MTX1Q13505 466 aa25.99■■□□□ 1.75
CD44-222ENST00000526025 ANKRD18AQ8IVF6 992 aa25.99■■□□□ 1.75
CD44-222ENST00000526025 SP8Q8IXZ3 490 aa25.99■■□□□ 1.75
CD44-222ENST00000526025 PELP1Q8IZL8 1130 aaKnown RBP25.99■■□□□ 1.75
CD44-222ENST00000526025 CCDC85AQ96PX6 553 aaPredicted RBP25.99■■□□□ 1.75
CD44-222ENST00000526025 CCDC57Q2TAC2 916 aa25.98■■□□□ 1.75
CD44-222ENST00000526025 CCDC93Q567U6 631 aa25.98■■□□□ 1.75
CD44-222ENST00000526025 WWC3Q9ULE0 1092 aa25.98■■□□□ 1.75
CD44-222ENST00000526025 CHD4Q14839 1912 aa25.97■■□□□ 1.75
CD44-222ENST00000526025 C21orf2O43822 256 aa25.97■■□□□ 1.75
CD44-222ENST00000526025 TMX4Q9H1E5 349 aaPredicted RBP25.97■■□□□ 1.75
CD44-222ENST00000526025 LTBP1Q14766 1721 aa25.97■■□□□ 1.75
CD44-222ENST00000526025 IGHMBP2P38935 993 aaKnown RBP25.96■■□□□ 1.75
CD44-222ENST00000526025 RTKN2Q8IZC4 609 aa25.96■■□□□ 1.75
CD44-222ENST00000526025 BSDC1Q9NW68 430 aaPredicted RBP25.96■■□□□ 1.75
CD44-222ENST00000526025 CHMP3Q9Y3E7 222 aa25.96■■□□□ 1.75
CD44-222ENST00000526025 SBF1O95248 1867 aa25.96■■□□□ 1.75
CD44-222ENST00000526025 LTBP3Q9NS15 1303 aa25.95■■□□□ 1.75
CD44-222ENST00000526025 ZBTB40Q9NUA8 1239 aa25.95■■□□□ 1.74
CD44-222ENST00000526025 A0A1B0GUL6 1792 aa25.95■■□□□ 1.74
CD44-222ENST00000526025 SUPT16HQ9Y5B9 1047 aaKnown RBP25.93■■□□□ 1.74
CD44-222ENST00000526025 CCDC88AQ3V6T2 1871 aa25.92■■□□□ 1.74
CD44-222ENST00000526025 PSMD1Q99460 953 aa25.92■■□□□ 1.74
CD44-222ENST00000526025 MPHOSPH8Q99549 860 aa25.92■■□□□ 1.74
CD44-222ENST00000526025 DICER1Q9UPY3 1922 aaKnown RBP25.92■■□□□ 1.74
CD44-222ENST00000526025 RFX5P48382 616 aaPredicted RBP25.91■■□□□ 1.74
CD44-222ENST00000526025 ZNF219Q9P2Y4 722 aaPredicted RBP25.91■■□□□ 1.74
CD44-222ENST00000526025 NFKBIEO00221 500 aa25.9■■□□□ 1.74
CD44-222ENST00000526025 TAF7LQ5H9L4 462 aa25.9■■□□□ 1.74
CD44-222ENST00000526025 ARHGAP27Q6ZUM4 889 aa25.9■■□□□ 1.74
CD44-222ENST00000526025 FBXO3Q9UK99 471 aa25.9■■□□□ 1.74
CD44-222ENST00000526025 FKBP4Q02790 459 aaKnown RBP eCLIP25.89■■□□□ 1.74
CD44-222ENST00000526025 RTFDC1Q9BY42 306 aaPredicted RBP25.89■■□□□ 1.74
CD44-222ENST00000526025 TAOK3Q9H2K8 898 aa25.89■■□□□ 1.74
CD44-222ENST00000526025 PODXL2Q9NZ53 605 aa25.89■■□□□ 1.74
CD44-222ENST00000526025 DUOX1Q9NRD9 1551 aa25.89■■□□□ 1.73
CD44-222ENST00000526025 UTRNP46939 3433 aa25.88■■□□□ 1.73
CD44-222ENST00000526025 SRGAP3O43295 1099 aa25.88■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms