RNA–Protein interactions for RNA: ENST00000526000.5

CD44-221, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 722 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-221ENST00000526000 ADARB2Q9NS39 739 aaKnown RBP8.64□□□□□ -1.03
CD44-221ENST00000526000 GPRC5DQ9NZD1 345 aa8.64□□□□□ -1.03
CD44-221ENST00000526000 CNOT7Q9UIV1 285 aaKnown RBP8.64□□□□□ -1.03
CD44-221ENST00000526000 DICER1Q9UPY3 1922 aaKnown RBP8.64□□□□□ -1.03
CD44-221ENST00000526000 BBOX1O75936 387 aa8.63□□□□□ -1.03
CD44-221ENST00000526000 TCIRG1Q13488 830 aa8.63□□□□□ -1.03
CD44-221ENST00000526000 DOK7Q18PE1 504 aa8.63□□□□□ -1.03
CD44-221ENST00000526000 SAMD7Q7Z3H4 446 aa8.63□□□□□ -1.03
CD44-221ENST00000526000 LRP10Q7Z4F1 713 aa8.63□□□□□ -1.03
CD44-221ENST00000526000 NLRP10Q86W26 655 aa8.63□□□□□ -1.03
CD44-221ENST00000526000 SUPT20HQ8NEM7 779 aa8.63□□□□□ -1.03
CD44-221ENST00000526000 JARID2Q92833 1246 aaPredicted RBP8.63□□□□□ -1.03
CD44-221ENST00000526000 TLL2Q9Y6L7 1015 aa8.63□□□□□ -1.03
CD44-221ENST00000526000 SIPA1L3O60292 1781 aaPredicted RBP8.63□□□□□ -1.03
CD44-221ENST00000526000 YDJCA8MPS7 323 aa8.62□□□□□ -1.03
CD44-221ENST00000526000 C6orf229H3BNL8 230 aa8.62□□□□□ -1.03
CD44-221ENST00000526000 H7C1D1 291 aa8.62□□□□□ -1.03
CD44-221ENST00000526000 TMPOP42166 694 aaKnown RBP8.62□□□□□ -1.03
CD44-221ENST00000526000 TBC1D10BQ4KMP7 808 aaPredicted RBP8.62□□□□□ -1.03
CD44-221ENST00000526000 FAM89AQ96GI7 184 aa8.62□□□□□ -1.03
CD44-221ENST00000526000 PNNQ9H307 717 aaKnown RBP8.62□□□□□ -1.03
CD44-221ENST00000526000 DBNDD1Q9H9R9 158 aa8.62□□□□□ -1.03
CD44-221ENST00000526000 NSFL1CQ9UNZ2 370 aaKnown RBP8.62□□□□□ -1.03
CD44-221ENST00000526000 PSMD14O00487 310 aa8.61□□□□□ -1.03
CD44-221ENST00000526000 KIAA2012Q0VF49 1180 aa8.61□□□□□ -1.03
CD44-221ENST00000526000 GRAPQ13588 217 aa8.61□□□□□ -1.03
CD44-221ENST00000526000 TNIP1Q15025 636 aa8.61□□□□□ -1.03
CD44-221ENST00000526000 WASHC4Q2M389 1173 aa8.61□□□□□ -1.03
CD44-221ENST00000526000 GRIPAP1Q4V328 841 aa8.61□□□□□ -1.03
CD44-221ENST00000526000 SAPCD2Q86UD0 394 aa8.61□□□□□ -1.03
CD44-221ENST00000526000 MICALL2Q8IY33 904 aa8.61□□□□□ -1.03
CD44-221ENST00000526000 GRAPLQ8TC17 118 aaPredicted RBP8.61□□□□□ -1.03
CD44-221ENST00000526000 CELF1Q92879 486 aaKnown RBP8.61□□□□□ -1.03
CD44-221ENST00000526000 CHPF2Q9P2E5 772 aa8.61□□□□□ -1.03
CD44-221ENST00000526000 SNED1Q8TER0 1413 aa8.61□□□□□ -1.03
CD44-221ENST00000526000 SH3TC1Q8TE82 1336 aa8.6□□□□□ -1.03
CD44-221ENST00000526000 SCN4AP35499 1836 aa8.6□□□□□ -1.03
CD44-221ENST00000526000 ELL2O00472 640 aaPredicted RBP8.6□□□□□ -1.03
CD44-221ENST00000526000 EGFRP00533 1210 aa8.6□□□□□ -1.03
CD44-221ENST00000526000 MAP2K2P36507 400 aa8.6□□□□□ -1.03
CD44-221ENST00000526000 HUNKP57058 714 aa8.6□□□□□ -1.03
CD44-221ENST00000526000 GPSM2P81274 684 aa8.6□□□□□ -1.03
CD44-221ENST00000526000 DDX10Q13206 875 aaKnown RBP8.6□□□□□ -1.03
CD44-221ENST00000526000 DGKZQ13574 1117 aa8.6□□□□□ -1.03
CD44-221ENST00000526000 HSP90AB3PQ58FF7 597 aa8.6□□□□□ -1.03
CD44-221ENST00000526000 CDC37L1Q7L3B6 337 aa8.6□□□□□ -1.03
CD44-221ENST00000526000 CCDC85AQ96PX6 553 aaPredicted RBP8.6□□□□□ -1.03
CD44-221ENST00000526000 RTFDC1Q9BY42 306 aaPredicted RBP8.6□□□□□ -1.03
CD44-221ENST00000526000 MCOLN1Q9GZU1 580 aa8.6□□□□□ -1.03
CD44-221ENST00000526000 BCORQ6W2J9 1755 aa8.6□□□□□ -1.03
CD44-221ENST00000526000 PCNTO95613 3336 aa8.6□□□□□ -1.03
CD44-221ENST00000526000 ERBB4Q15303 1308 aa8.59□□□□□ -1.03
CD44-221ENST00000526000 ADM5C9JUS6 153 aa8.59□□□□□ -1.03
CD44-221ENST00000526000 G3V3G9 751 aa8.59□□□□□ -1.03
CD44-221ENST00000526000 MLLT1Q03111 559 aaPredicted RBP8.59□□□□□ -1.03
CD44-221ENST00000526000 DCAF8Q5TAQ9 597 aa8.59□□□□□ -1.03
CD44-221ENST00000526000 ANKRD13DQ6ZTN6 518 aa8.59□□□□□ -1.03
CD44-221ENST00000526000 VPS33BQ9H267 617 aa8.59□□□□□ -1.03
CD44-221ENST00000526000 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.59□□□□□ -1.03
CD44-221ENST00000526000 POLLQ9UGP5 575 aa8.59□□□□□ -1.03
CD44-221ENST00000526000 PGAP2Q9UHJ9 254 aa8.59□□□□□ -1.03
CD44-221ENST00000526000 SCAF8Q9UPN6 1271 aaKnown RBP8.59□□□□□ -1.03
CD44-221ENST00000526000 LTBP1Q14766 1721 aa8.59□□□□□ -1.03
CD44-221ENST00000526000 ASTN2O75129 1339 aaPredicted RBP8.58□□□□□ -1.04
CD44-221ENST00000526000 CHL1O00533 1208 aa8.58□□□□□ -1.04
CD44-221ENST00000526000 KIF23Q02241 960 aaPredicted RBP8.58□□□□□ -1.04
CD44-221ENST00000526000 HDGFL1Q5TGJ6 251 aa8.58□□□□□ -1.04
CD44-221ENST00000526000 KRT26Q7Z3Y9 468 aa8.58□□□□□ -1.04
CD44-221ENST00000526000 SEC31BQ9NQW1 1179 aa8.58□□□□□ -1.04
CD44-221ENST00000526000 RIC1Q4ADV7 1423 aa8.57□□□□□ -1.04
CD44-221ENST00000526000 IRS4O14654 1257 aaPredicted RBP8.57□□□□□ -1.04
CD44-221ENST00000526000 ECE2O60344 883 aa8.57□□□□□ -1.04
CD44-221ENST00000526000 TRPA1O75762 1119 aa8.57□□□□□ -1.04
CD44-221ENST00000526000 RPS8P62241 208 aaKnown RBP8.57□□□□□ -1.04
CD44-221ENST00000526000 PRAMEF18Q5VWM3 479 aa8.57□□□□□ -1.04
CD44-221ENST00000526000 DUSP27Q5VZP5 1158 aa8.57□□□□□ -1.04
CD44-221ENST00000526000 RIC3Q7Z5B4 369 aa8.57□□□□□ -1.04
CD44-221ENST00000526000 C2orf69Q8N8R5 385 aa8.57□□□□□ -1.04
CD44-221ENST00000526000 PLBD2Q8NHP8 589 aa8.57□□□□□ -1.04
CD44-221ENST00000526000 DCPSQ96C86 337 aaKnown RBP8.57□□□□□ -1.04
CD44-221ENST00000526000 ISCA1Q9BUE6 129 aa8.57□□□□□ -1.04
CD44-221ENST00000526000 GBA2Q9HCG7 927 aaPredicted RBP8.57□□□□□ -1.04
CD44-221ENST00000526000 TRIM35Q9UPQ4 493 aa8.57□□□□□ -1.04
CD44-221ENST00000526000 IBTKQ9P2D0 1353 aaPredicted RBP8.57□□□□□ -1.04
CD44-221ENST00000526000 NUP98P52948 1817 aa8.57□□□□□ -1.04
CD44-221ENST00000526000 WTIPA6NIX2 430 aaPredicted RBP8.56□□□□□ -1.04
CD44-221ENST00000526000 ZNF157P51786 506 aaPredicted RBP8.56□□□□□ -1.04
CD44-221ENST00000526000 LMOD3Q0VAK6 560 aa8.56□□□□□ -1.04
CD44-221ENST00000526000 SF3B3Q15393 1217 aaKnown RBP8.56□□□□□ -1.04
CD44-221ENST00000526000 RGMBQ6NW40 437 aa8.56□□□□□ -1.04
CD44-221ENST00000526000 TBC1D16Q8TBP0 767 aa8.56□□□□□ -1.04
CD44-221ENST00000526000 ZC3H15Q8WU90 426 aaKnown RBP8.56□□□□□ -1.04
CD44-221ENST00000526000 MYD88Q99836 296 aa8.56□□□□□ -1.04
CD44-221ENST00000526000 ZC3H12CQ9C0D7 883 aaKnown RBP8.56□□□□□ -1.04
CD44-221ENST00000526000 PHAXQ9H814 394 aaKnown RBP8.56□□□□□ -1.04
CD44-221ENST00000526000 ANKIB1Q9P2G1 1089 aa8.56□□□□□ -1.04
CD44-221ENST00000526000 ADAMTS8Q9UP79 889 aa8.56□□□□□ -1.04
CD44-221ENST00000526000 ADAMTSL1Q8N6G6 1762 aa8.56□□□□□ -1.04
CD44-221ENST00000526000 ARFGEF2Q9Y6D5 1785 aa8.56□□□□□ -1.04
CD44-221ENST00000526000 UFL1O94874 794 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms