RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 G2E3Q7L622 706 aa20.75■□□□□ 0.91
LSM1-205ENST00000523511 DDNO94850 711 aaPredicted RBP20.74■□□□□ 0.91
LSM1-205ENST00000523511 HSPA6P17066 643 aa20.74■□□□□ 0.91
LSM1-205ENST00000523511 RPS8P62241 208 aaKnown RBP20.74■□□□□ 0.91
LSM1-205ENST00000523511 NIM1KQ8IY84 436 aa20.74■□□□□ 0.91
LSM1-205ENST00000523511 SMC1BQ8NDV3 1235 aa20.74■□□□□ 0.91
LSM1-205ENST00000523511 LINS1Q8NG48 757 aa20.74■□□□□ 0.91
LSM1-205ENST00000523511 CDHR2Q9BYE9 1310 aa20.74■□□□□ 0.91
LSM1-205ENST00000523511 NEURL1BA8MQ27 555 aa20.73■□□□□ 0.91
LSM1-205ENST00000523511 FZD9O00144 591 aa20.73■□□□□ 0.91
LSM1-205ENST00000523511 PPIP5K2O43314 1243 aa20.73■□□□□ 0.91
LSM1-205ENST00000523511 IGKV5-2P06315 115 aa20.73■□□□□ 0.91
LSM1-205ENST00000523511 RTFDC1Q9BY42 306 aaPredicted RBP20.73■□□□□ 0.91
LSM1-205ENST00000523511 TNRC6CQ9HCJ0 1690 aaKnown RBP20.73■□□□□ 0.91
LSM1-205ENST00000523511 ARFGEF2Q9Y6D5 1785 aa20.72■□□□□ 0.91
LSM1-205ENST00000523511 NSFL1CQ9UNZ2 370 aaKnown RBP20.72■□□□□ 0.91
LSM1-205ENST00000523511 ANKRD36CQ5JPF3 1778 aa20.72■□□□□ 0.91
LSM1-205ENST00000523511 FER1L6Q2WGJ9 1857 aa20.71■□□□□ 0.91
LSM1-205ENST00000523511 CWF19L2Q2TBE0 894 aaKnown RBP20.71■□□□□ 0.91
LSM1-205ENST00000523511 GPC2Q8N158 579 aa20.71■□□□□ 0.91
LSM1-205ENST00000523511 CDC5LQ99459 802 aaKnown RBP20.71■□□□□ 0.91
LSM1-205ENST00000523511 SBF1O95248 1867 aa20.71■□□□□ 0.91
LSM1-205ENST00000523511 H7C1W4 665 aa20.7■□□□□ 0.9
LSM1-205ENST00000523511 SLFN5Q08AF3 891 aa20.7■□□□□ 0.9
LSM1-205ENST00000523511 GCKRQ14397 625 aa20.7■□□□□ 0.9
LSM1-205ENST00000523511 CELF1Q92879 486 aaKnown RBP20.7■□□□□ 0.9
LSM1-205ENST00000523511 L3MBTL3Q96JM7 780 aaPredicted RBP20.7■□□□□ 0.9
LSM1-205ENST00000523511 EYA3Q99504 573 aa20.7■□□□□ 0.9
LSM1-205ENST00000523511 APLP1P51693 650 aa20.69■□□□□ 0.9
LSM1-205ENST00000523511 ANKRD18AQ8IVF6 992 aa20.69■□□□□ 0.9
LSM1-205ENST00000523511 C6orf229H3BNL8 230 aa20.68■□□□□ 0.9
LSM1-205ENST00000523511 LMOD1P29536 600 aaPredicted RBP20.68■□□□□ 0.9
LSM1-205ENST00000523511 CTSWP56202 376 aa20.68■□□□□ 0.9
LSM1-205ENST00000523511 AOC3Q16853 763 aa20.68■□□□□ 0.9
LSM1-205ENST00000523511 UBE3BQ7Z3V4 1068 aa20.68■□□□□ 0.9
LSM1-205ENST00000523511 JARID2Q92833 1246 aaPredicted RBP20.68■□□□□ 0.9
LSM1-205ENST00000523511 HACL1Q9UJ83 578 aa20.68■□□□□ 0.9
LSM1-205ENST00000523511 ZNRF3Q9ULT6 936 aa20.68■□□□□ 0.9
LSM1-205ENST00000523511 KIAA2012Q0VF49 1180 aa20.67■□□□□ 0.9
LSM1-205ENST00000523511 TNIP1Q15025 636 aa20.67■□□□□ 0.9
LSM1-205ENST00000523511 WASHC4Q2M389 1173 aa20.67■□□□□ 0.9
LSM1-205ENST00000523511 PNMA8AQ86V59 439 aaPredicted RBP20.67■□□□□ 0.9
LSM1-205ENST00000523511 ANKIB1Q9P2G1 1089 aa20.67■□□□□ 0.9
LSM1-205ENST00000523511 GJA3Q9Y6H8 435 aa20.67■□□□□ 0.9
LSM1-205ENST00000523511 POTECB2RU33 542 aa20.66■□□□□ 0.9
LSM1-205ENST00000523511 G3V3G9 751 aa20.66■□□□□ 0.9
LSM1-205ENST00000523511 CT47B1P0C2W7 299 aaPredicted RBP20.66■□□□□ 0.9
LSM1-205ENST00000523511 DCAF8Q5TAQ9 597 aa20.66■□□□□ 0.9
LSM1-205ENST00000523511 ZC3H12CQ9C0D7 883 aaKnown RBP20.66■□□□□ 0.9
LSM1-205ENST00000523511 SNED1Q8TER0 1413 aa20.66■□□□□ 0.9
LSM1-205ENST00000523511 ZNF541Q9H0D2 1346 aa20.65■□□□□ 0.9
LSM1-205ENST00000523511 SLC4A10Q6U841 1118 aa20.65■□□□□ 0.9
LSM1-205ENST00000523511 TTLL11Q8NHH1 800 aa20.65■□□□□ 0.9
LSM1-205ENST00000523511 CCDC85AQ96PX6 553 aaPredicted RBP20.65■□□□□ 0.9
LSM1-205ENST00000523511 PLA2G12BQ9BX93 195 aa20.65■□□□□ 0.9
LSM1-205ENST00000523511 SEC31BQ9NQW1 1179 aa20.65■□□□□ 0.9
LSM1-205ENST00000523511 C9orf78Q9NZ63 289 aaPredicted RBP20.65■□□□□ 0.9
LSM1-205ENST00000523511 PTPRCP08575 1304 aa20.64■□□□□ 0.89
LSM1-205ENST00000523511 ALDH1L1O75891 902 aa20.64■□□□□ 0.89
LSM1-205ENST00000523511 IGHMBP2P38935 993 aaKnown RBP20.64■□□□□ 0.89
LSM1-205ENST00000523511 ALDH1L2Q3SY69 923 aa20.64■□□□□ 0.89
LSM1-205ENST00000523511 BEND3Q5T5X7 828 aa20.64■□□□□ 0.89
LSM1-205ENST00000523511 SRCIN1Q9C0H9 1055 aa20.64■□□□□ 0.89
LSM1-205ENST00000523511 TAF1DQ9H5J8 278 aaPredicted RBP20.64■□□□□ 0.89
LSM1-205ENST00000523511 CACNA1SQ13698 1873 aa20.64■□□□□ 0.89
LSM1-205ENST00000523511 F6X3S4 739 aa20.63■□□□□ 0.89
LSM1-205ENST00000523511 EPHX2P34913 555 aa20.63■□□□□ 0.89
LSM1-205ENST00000523511 GPSM2P81274 684 aa20.63■□□□□ 0.89
LSM1-205ENST00000523511 CHADLQ6NUI6 762 aa20.63■□□□□ 0.89
LSM1-205ENST00000523511 PODXL2Q9NZ53 605 aa20.63■□□□□ 0.89
LSM1-205ENST00000523511 GGA1Q9UJY5 639 aa20.63■□□□□ 0.89
LSM1-205ENST00000523511 CLEC11AQ9Y240 323 aa20.63■□□□□ 0.89
LSM1-205ENST00000523511 CIAPIN1Q6FI81 312 aa20.62■□□□□ 0.89
LSM1-205ENST00000523511 LDHDQ86WU2 507 aa20.62■□□□□ 0.89
LSM1-205ENST00000523511 MIER1Q8N108 512 aa20.62■□□□□ 0.89
LSM1-205ENST00000523511 MPHOSPH8Q99549 860 aa20.62■□□□□ 0.89
LSM1-205ENST00000523511 BSDC1Q9NW68 430 aaPredicted RBP20.62■□□□□ 0.89
LSM1-205ENST00000523511 TIAM2Q8IVF5 1701 aa20.61■□□□□ 0.89
LSM1-205ENST00000523511 ATP2B4P23634 1241 aa20.61■□□□□ 0.89
LSM1-205ENST00000523511 EAPPQ56P03 285 aaPredicted RBP20.61■□□□□ 0.89
LSM1-205ENST00000523511 MRPL50Q8N5N7 158 aaKnown RBP20.61■□□□□ 0.89
LSM1-205ENST00000523511 TBC1D16Q8TBP0 767 aa20.61■□□□□ 0.89
LSM1-205ENST00000523511 CDCA7LQ96GN5 454 aa20.61■□□□□ 0.89
LSM1-205ENST00000523511 RTL9Q8NET4 1388 aa20.6■□□□□ 0.89
LSM1-205ENST00000523511 ANKRD18BA2A2Z9 1011 aa20.6■□□□□ 0.89
LSM1-205ENST00000523511 GRM8O00222 908 aa20.6■□□□□ 0.89
LSM1-205ENST00000523511 RIMBP2O15034 1052 aa20.6■□□□□ 0.89
LSM1-205ENST00000523511 CSF1RP07333 972 aa20.6■□□□□ 0.89
LSM1-205ENST00000523511 TRMT2AQ8IZ69 625 aaKnown RBP20.6■□□□□ 0.89
LSM1-205ENST00000523511 BCL2L13Q9BXK5 485 aa20.6■□□□□ 0.89
LSM1-205ENST00000523511 GREM2Q9H772 168 aa20.6■□□□□ 0.89
LSM1-205ENST00000523511 POLLQ9UGP5 575 aa20.6■□□□□ 0.89
LSM1-205ENST00000523511 WDR90Q96KV7 1748 aa20.6■□□□□ 0.89
LSM1-205ENST00000523511 XDHP47989 1333 aa20.59■□□□□ 0.89
LSM1-205ENST00000523511 DICER1Q9UPY3 1922 aaKnown RBP20.59■□□□□ 0.89
LSM1-205ENST00000523511 UFL1O94874 794 aa20.59■□□□□ 0.89
LSM1-205ENST00000523511 ITGA6P23229 1130 aa20.59■□□□□ 0.89
LSM1-205ENST00000523511 CXCL9Q07325 125 aa20.59■□□□□ 0.89
LSM1-205ENST00000523511 IFIT5Q13325 482 aaKnown RBP20.59■□□□□ 0.89
LSM1-205ENST00000523511 SSH1Q8WYL5 1049 aa20.59■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms