RNA–Protein interactions for RNA: ENST00000520229.1

PDGFRB-206, Transcript of platelet derived growth factor receptor beta, humanhuman

TSL 3

Gene PDGFRB, Length 738 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-206ENST00000520229 GRAPQ13588 217 aa19.72■□□□□ 0.75
PDGFRB-206ENST00000520229 SF3B3Q15393 1217 aaKnown RBP19.72■□□□□ 0.75
PDGFRB-206ENST00000520229 GRIPAP1Q4V328 841 aa19.72■□□□□ 0.75
PDGFRB-206ENST00000520229 GRAPLQ8TC17 118 aaPredicted RBP19.72■□□□□ 0.75
PDGFRB-206ENST00000520229 DNAAF4Q8WXU2 420 aa19.72■□□□□ 0.75
PDGFRB-206ENST00000520229 ZNF277Q9NRM2 450 aaPredicted RBP19.72■□□□□ 0.75
PDGFRB-206ENST00000520229 NEURL1BA8MQ27 555 aa19.71■□□□□ 0.75
PDGFRB-206ENST00000520229 BBOX1O75936 387 aa19.71■□□□□ 0.75
PDGFRB-206ENST00000520229 CWF19L2Q2TBE0 894 aaKnown RBP19.71■□□□□ 0.75
PDGFRB-206ENST00000520229 JARID2Q92833 1246 aaPredicted RBP19.71■□□□□ 0.75
PDGFRB-206ENST00000520229 CDCA7LQ96GN5 454 aa19.71■□□□□ 0.75
PDGFRB-206ENST00000520229 PSMD1Q99460 953 aa19.71■□□□□ 0.75
PDGFRB-206ENST00000520229 ATP6V0A2Q9Y487 856 aa19.71■□□□□ 0.75
PDGFRB-206ENST00000520229 SLC51AQ86UW1 340 aa19.7■□□□□ 0.74
PDGFRB-206ENST00000520229 ADAMTSL1Q8N6G6 1762 aa19.7■□□□□ 0.74
PDGFRB-206ENST00000520229 PDE8AO60658 829 aa19.69■□□□□ 0.74
PDGFRB-206ENST00000520229 CDHR2Q9BYE9 1310 aa19.69■□□□□ 0.74
PDGFRB-206ENST00000520229 IARSP41252 1262 aaKnown RBP19.68■□□□□ 0.74
PDGFRB-206ENST00000520229 HTRA3P83110 453 aa19.68■□□□□ 0.74
PDGFRB-206ENST00000520229 DPY19L2Q6NUT2 758 aa19.68■□□□□ 0.74
PDGFRB-206ENST00000520229 TMC4Q7Z404 712 aa19.68■□□□□ 0.74
PDGFRB-206ENST00000520229 LINS1Q8NG48 757 aa19.68■□□□□ 0.74
PDGFRB-206ENST00000520229 F6X3S4 739 aa19.67■□□□□ 0.74
PDGFRB-206ENST00000520229 CCDC152Q4G0S7 254 aa19.67■□□□□ 0.74
PDGFRB-206ENST00000520229 SP8Q8IXZ3 490 aa19.67■□□□□ 0.74
PDGFRB-206ENST00000520229 SCN4AP35499 1836 aa19.67■□□□□ 0.74
PDGFRB-206ENST00000520229 GCKRQ14397 625 aa19.66■□□□□ 0.74
PDGFRB-206ENST00000520229 UBE3BQ7Z3V4 1068 aa19.66■□□□□ 0.74
PDGFRB-206ENST00000520229 TRMT2AQ8IZ69 625 aaKnown RBP19.66■□□□□ 0.74
PDGFRB-206ENST00000520229 CELF1Q92879 486 aaKnown RBP19.66■□□□□ 0.74
PDGFRB-206ENST00000520229 H7C1W4 665 aa19.65■□□□□ 0.74
PDGFRB-206ENST00000520229 VEGFAP15692 232 aaPredicted RBP19.65■□□□□ 0.74
PDGFRB-206ENST00000520229 CTSWP56202 376 aa19.65■□□□□ 0.74
PDGFRB-206ENST00000520229 DPP8Q6V1X1 898 aaPredicted RBP19.65■□□□□ 0.74
PDGFRB-206ENST00000520229 C16orf71Q8IYS4 520 aaPredicted RBP19.65■□□□□ 0.74
PDGFRB-206ENST00000520229 CCDC85AQ96PX6 553 aaPredicted RBP19.65■□□□□ 0.74
PDGFRB-206ENST00000520229 LARGE2Q8N3Y3 721 aa19.64■□□□□ 0.73
PDGFRB-206ENST00000520229 MPNDQ8N594 471 aa19.64■□□□□ 0.73
PDGFRB-206ENST00000520229 MRPL50Q8N5N7 158 aaKnown RBP19.64■□□□□ 0.73
PDGFRB-206ENST00000520229 SMC1BQ8NDV3 1235 aa19.64■□□□□ 0.73
PDGFRB-206ENST00000520229 SUPT20HQ8NEM7 779 aa19.64■□□□□ 0.73
PDGFRB-206ENST00000520229 JDP2Q8WYK2 163 aa19.64■□□□□ 0.73
PDGFRB-206ENST00000520229 SSH1Q8WYL5 1049 aa19.64■□□□□ 0.73
PDGFRB-206ENST00000520229 LTBP1Q14766 1721 aa19.64■□□□□ 0.73
PDGFRB-206ENST00000520229 TAF1P21675 1872 aa19.63■□□□□ 0.73
PDGFRB-206ENST00000520229 RPS8P62241 208 aaKnown RBP19.63■□□□□ 0.73
PDGFRB-206ENST00000520229 HNRNPUQ00839 825 aaKnown RBP eCLIP19.63■□□□□ 0.73
PDGFRB-206ENST00000520229 BEND3Q5T5X7 828 aa19.63■□□□□ 0.73
PDGFRB-206ENST00000520229 SLC4A10Q6U841 1118 aa19.63■□□□□ 0.73
PDGFRB-206ENST00000520229 SEC31BQ9NQW1 1179 aa19.63■□□□□ 0.73
PDGFRB-206ENST00000520229 ZNF541Q9H0D2 1346 aa19.62■□□□□ 0.73
PDGFRB-206ENST00000520229 PPIP5K2O43314 1243 aa19.62■□□□□ 0.73
PDGFRB-206ENST00000520229 JMYQ8N9B5 988 aa19.62■□□□□ 0.73
PDGFRB-206ENST00000520229 L3MBTL3Q96JM7 780 aaPredicted RBP19.62■□□□□ 0.73
PDGFRB-206ENST00000520229 BCL2L13Q9BXK5 485 aa19.62■□□□□ 0.73
PDGFRB-206ENST00000520229 RTFDC1Q9BY42 306 aaPredicted RBP19.62■□□□□ 0.73
PDGFRB-206ENST00000520229 LRRC37AA6NMS7 1700 aa19.62■□□□□ 0.73
PDGFRB-206ENST00000520229 COL4A1P02462 1669 aa19.62■□□□□ 0.73
PDGFRB-206ENST00000520229 DDNO94850 711 aaPredicted RBP19.61■□□□□ 0.73
PDGFRB-206ENST00000520229 CT47B1P0C2W7 299 aaPredicted RBP19.61■□□□□ 0.73
PDGFRB-206ENST00000520229 POTEIP0CG38 1075 aa19.61■□□□□ 0.73
PDGFRB-206ENST00000520229 POTEJP0CG39 1038 aa19.61■□□□□ 0.73
PDGFRB-206ENST00000520229 ALDH1L2Q3SY69 923 aa19.61■□□□□ 0.73
PDGFRB-206ENST00000520229 KLRG1Q96E93 195 aa19.61■□□□□ 0.73
PDGFRB-206ENST00000520229 SMC4Q9NTJ3 1288 aa19.61■□□□□ 0.73
PDGFRB-206ENST00000520229 PTPRCP08575 1304 aa19.6■□□□□ 0.73
PDGFRB-206ENST00000520229 CASP7P55210 303 aa19.6■□□□□ 0.73
PDGFRB-206ENST00000520229 AOC3Q16853 763 aa19.6■□□□□ 0.73
PDGFRB-206ENST00000520229 ANKRD18AQ8IVF6 992 aa19.6■□□□□ 0.73
PDGFRB-206ENST00000520229 NIM1KQ8IY84 436 aa19.6■□□□□ 0.73
PDGFRB-206ENST00000520229 TTLL11Q8NHH1 800 aa19.6■□□□□ 0.73
PDGFRB-206ENST00000520229 CDC5LQ99459 802 aaKnown RBP19.6■□□□□ 0.73
PDGFRB-206ENST00000520229 SRCIN1Q9C0H9 1055 aa19.6■□□□□ 0.73
PDGFRB-206ENST00000520229 VPS33BQ9H267 617 aa19.6■□□□□ 0.73
PDGFRB-206ENST00000520229 FZD9O00144 591 aa19.59■□□□□ 0.73
PDGFRB-206ENST00000520229 ALDH1L1O75891 902 aa19.59■□□□□ 0.73
PDGFRB-206ENST00000520229 EIF6P56537 245 aaKnown RBP19.59■□□□□ 0.73
PDGFRB-206ENST00000520229 PLA2G12BQ9BX93 195 aa19.59■□□□□ 0.73
PDGFRB-206ENST00000520229 GREM2Q9H772 168 aa19.59■□□□□ 0.73
PDGFRB-206ENST00000520229 NSFL1CQ9UNZ2 370 aaKnown RBP19.59■□□□□ 0.73
PDGFRB-206ENST00000520229 MYH3P11055 1940 aa19.59■□□□□ 0.73
PDGFRB-206ENST00000520229 RTL9Q8NET4 1388 aa19.58■□□□□ 0.73
PDGFRB-206ENST00000520229 DUOX1Q9NRD9 1551 aa19.58■□□□□ 0.73
PDGFRB-206ENST00000520229 C9orf78Q9NZ63 289 aaPredicted RBP19.58■□□□□ 0.72
PDGFRB-206ENST00000520229 GRM8O00222 908 aa19.57■□□□□ 0.72
PDGFRB-206ENST00000520229 GPSM2P81274 684 aa19.57■□□□□ 0.72
PDGFRB-206ENST00000520229 KIAA2012Q0VF49 1180 aa19.57■□□□□ 0.72
PDGFRB-206ENST00000520229 C6orf229H3BNL8 230 aa19.56■□□□□ 0.72
PDGFRB-206ENST00000520229 IQCA1LA6NCM1 817 aa19.55■□□□□ 0.72
PDGFRB-206ENST00000520229 FAM161AQ3B820 660 aa19.55■□□□□ 0.72
PDGFRB-206ENST00000520229 GPC2Q8N158 579 aa19.55■□□□□ 0.72
PDGFRB-206ENST00000520229 ANKIB1Q9P2G1 1089 aa19.55■□□□□ 0.72
PDGFRB-206ENST00000520229 GJA3Q9Y6H8 435 aa19.55■□□□□ 0.72
PDGFRB-206ENST00000520229 PASKQ96RG2 1323 aa19.54■□□□□ 0.72
PDGFRB-206ENST00000520229 CSF1RP07333 972 aa19.54■□□□□ 0.72
PDGFRB-206ENST00000520229 ITGA6P23229 1130 aa19.54■□□□□ 0.72
PDGFRB-206ENST00000520229 IGHMBP2P38935 993 aaKnown RBP19.54■□□□□ 0.72
PDGFRB-206ENST00000520229 WASHC4Q2M389 1173 aa19.54■□□□□ 0.72
PDGFRB-206ENST00000520229 EYA3Q99504 573 aa19.54■□□□□ 0.72
PDGFRB-206ENST00000520229 TAF1DQ9H5J8 278 aaPredicted RBP19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms