RNA–Protein interactions for RNA: ENST00000518872.1

SYNPO-203, Transcript of synaptopodin, humanhuman

TSL 5

Gene SYNPO, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-203ENST00000518872 COL4A5P29400 1685 aa38.13■■■■□ 3.69
SYNPO-203ENST00000518872 PCCAP05165 728 aaPredicted RBP38.12■■■■□ 3.69
SYNPO-203ENST00000518872 CWC25Q9NXE8 425 aaPredicted RBP38.12■■■■□ 3.69
SYNPO-203ENST00000518872 ZNF541Q9H0D2 1346 aa38.12■■■■□ 3.69
SYNPO-203ENST00000518872 PI4KAP2A4QPH2 592 aa38.11■■■■□ 3.69
SYNPO-203ENST00000518872 TCERG1O14776 1098 aaKnown RBP38.11■■■■□ 3.69
SYNPO-203ENST00000518872 VAMP4O75379 141 aa38.11■■■■□ 3.69
SYNPO-203ENST00000518872 PI4KAP1Q8N8J0 262 aa38.11■■■■□ 3.69
SYNPO-203ENST00000518872 SLC4A2P04920 1241 aa38.1■■■■□ 3.69
SYNPO-203ENST00000518872 SPINK5Q9NQ38 1064 aaPredicted RBP38.1■■■■□ 3.69
SYNPO-203ENST00000518872 IQCA1LA6NCM1 817 aa38.09■■■■□ 3.69
SYNPO-203ENST00000518872 SUPT20HQ8NEM7 779 aa38.09■■■■□ 3.69
SYNPO-203ENST00000518872 MYH16Q9H6N6 1097 aa38.09■■■■□ 3.69
SYNPO-203ENST00000518872 ZNF521Q96K83 1311 aa38.09■■■■□ 3.69
SYNPO-203ENST00000518872 EXOSC9Q06265 439 aaKnown RBP38.08■■■■□ 3.69
SYNPO-203ENST00000518872 RTL5Q5HYW3 569 aaPredicted RBP38.07■■■■□ 3.68
SYNPO-203ENST00000518872 G2E3Q7L622 706 aa38.07■■■■□ 3.68
SYNPO-203ENST00000518872 LARGE2Q8N3Y3 721 aa38.07■■■■□ 3.68
SYNPO-203ENST00000518872 CDHR2Q9BYE9 1310 aa38.06■■■■□ 3.68
SYNPO-203ENST00000518872 IGKV5-2P06315 115 aa38.05■■■■□ 3.68
SYNPO-203ENST00000518872 NEXNQ0ZGT2 675 aa38.05■■■■□ 3.68
SYNPO-203ENST00000518872 FLIIQ13045 1269 aa38.05■■■■□ 3.68
SYNPO-203ENST00000518872 GPC2Q8N158 579 aa38.05■■■■□ 3.68
SYNPO-203ENST00000518872 MPNDQ8N594 471 aa38.05■■■■□ 3.68
SYNPO-203ENST00000518872 DPP8Q6V1X1 898 aaPredicted RBP38.04■■■■□ 3.68
SYNPO-203ENST00000518872 MYH3P11055 1940 aa38.03■■■■□ 3.68
SYNPO-203ENST00000518872 CELF1Q92879 486 aaKnown RBP38.03■■■■□ 3.68
SYNPO-203ENST00000518872 DUOX1Q9NRD9 1551 aa38.02■■■■□ 3.68
SYNPO-203ENST00000518872 COL4A1P02462 1669 aa38.02■■■■□ 3.68
SYNPO-203ENST00000518872 PPIP5K2O43314 1243 aa38.02■■■■□ 3.68
SYNPO-203ENST00000518872 PDE8AO60658 829 aa38.02■■■■□ 3.68
SYNPO-203ENST00000518872 EIF6P56537 245 aaKnown RBP38.02■■■■□ 3.68
SYNPO-203ENST00000518872 NIM1KQ8IY84 436 aa38■■■■□ 3.67
SYNPO-203ENST00000518872 TAF1DQ9H5J8 278 aaPredicted RBP38■■■■□ 3.67
SYNPO-203ENST00000518872 LTBP1Q14766 1721 aa38■■■■□ 3.67
SYNPO-203ENST00000518872 NEURL1BA8MQ27 555 aa37.99■■■■□ 3.67
SYNPO-203ENST00000518872 KIAA2012Q0VF49 1180 aa37.98■■■■□ 3.67
SYNPO-203ENST00000518872 AOC3Q16853 763 aa37.98■■■■□ 3.67
SYNPO-203ENST00000518872 CCDC152Q4G0S7 254 aa37.98■■■■□ 3.67
SYNPO-203ENST00000518872 HACL1Q9UJ83 578 aa37.98■■■■□ 3.67
SYNPO-203ENST00000518872 RPS8P62241 208 aaKnown RBP37.97■■■■□ 3.67
SYNPO-203ENST00000518872 ADAMTSL1Q8N6G6 1762 aa37.96■■■■□ 3.67
SYNPO-203ENST00000518872 CCER2I3L3R5 266 aa37.96■■■■□ 3.67
SYNPO-203ENST00000518872 FKBP5Q13451 457 aaPredicted RBP37.96■■■■□ 3.67
SYNPO-203ENST00000518872 CWF19L2Q2TBE0 894 aaKnown RBP37.95■■■■□ 3.67
SYNPO-203ENST00000518872 DNAAF4Q8WXU2 420 aa37.95■■■■□ 3.67
SYNPO-203ENST00000518872 CHADLQ6NUI6 762 aa37.94■■■■□ 3.66
SYNPO-203ENST00000518872 ZNRF3Q9ULT6 936 aa37.94■■■■□ 3.66
SYNPO-203ENST00000518872 LDHDQ86WU2 507 aa37.93■■■■□ 3.66
SYNPO-203ENST00000518872 DNAJC5GQ8N7S2 189 aa37.93■■■■□ 3.66
SYNPO-203ENST00000518872 JARID2Q92833 1246 aaPredicted RBP37.93■■■■□ 3.66
SYNPO-203ENST00000518872 H7C1W4 665 aa37.92■■■■□ 3.66
SYNPO-203ENST00000518872 LINS1Q8NG48 757 aa37.92■■■■□ 3.66
SYNPO-203ENST00000518872 SEC31BQ9NQW1 1179 aa37.92■■■■□ 3.66
SYNPO-203ENST00000518872 POTEIP0CG38 1075 aa37.91■■■■□ 3.66
SYNPO-203ENST00000518872 POTEJP0CG39 1038 aa37.91■■■■□ 3.66
SYNPO-203ENST00000518872 EPHX2P34913 555 aa37.91■■■■□ 3.66
SYNPO-203ENST00000518872 CTSWP56202 376 aa37.9■■■■□ 3.66
SYNPO-203ENST00000518872 GCKRQ14397 625 aa37.9■■■■□ 3.66
SYNPO-203ENST00000518872 PNMA8AQ86V59 439 aaPredicted RBP37.9■■■■□ 3.66
SYNPO-203ENST00000518872 NSFL1CQ9UNZ2 370 aaKnown RBP37.9■■■■□ 3.66
SYNPO-203ENST00000518872 RTL9Q8NET4 1388 aa37.9■■■■□ 3.66
SYNPO-203ENST00000518872 PODXL2Q9NZ53 605 aa37.89■■■■□ 3.66
SYNPO-203ENST00000518872 GJA3Q9Y6H8 435 aa37.89■■■■□ 3.66
SYNPO-203ENST00000518872 PLA2G12BQ9BX93 195 aa37.88■■■■□ 3.65
SYNPO-203ENST00000518872 SCNN1DP51172 638 aa37.87■■■■□ 3.65
SYNPO-203ENST00000518872 GPSM2P81274 684 aa37.87■■■■□ 3.65
SYNPO-203ENST00000518872 TTLL11Q8NHH1 800 aa37.87■■■■□ 3.65
SYNPO-203ENST00000518872 E9PSI1 815 aa37.86■■■■□ 3.65
SYNPO-203ENST00000518872 CXCL9Q07325 125 aa37.86■■■■□ 3.65
SYNPO-203ENST00000518872 WASHC4Q2M389 1173 aa37.85■■■■□ 3.65
SYNPO-203ENST00000518872 UBE3BQ7Z3V4 1068 aa37.85■■■■□ 3.65
SYNPO-203ENST00000518872 POLLQ9UGP5 575 aa37.85■■■■□ 3.65
SYNPO-203ENST00000518872 LMOD1P29536 600 aaPredicted RBP37.84■■■■□ 3.65
SYNPO-203ENST00000518872 CASP7P55210 303 aa37.84■■■■□ 3.65
SYNPO-203ENST00000518872 CDC5LQ99459 802 aaKnown RBP37.84■■■■□ 3.65
SYNPO-203ENST00000518872 ANKRD18AQ8IVF6 992 aa37.83■■■■□ 3.65
SYNPO-203ENST00000518872 EYA3Q99504 573 aa37.83■■■■□ 3.65
SYNPO-203ENST00000518872 CIAPIN1Q6FI81 312 aa37.82■■■■□ 3.64
SYNPO-203ENST00000518872 TBC1D16Q8TBP0 767 aa37.82■■■■□ 3.64
SYNPO-203ENST00000518872 EAPPQ56P03 285 aaPredicted RBP37.81■■■■□ 3.64
SYNPO-203ENST00000518872 CCDC85AQ96PX6 553 aaPredicted RBP37.81■■■■□ 3.64
SYNPO-203ENST00000518872 C6orf229H3BNL8 230 aa37.8■■■■□ 3.64
SYNPO-203ENST00000518872 HTRA3P83110 453 aa37.8■■■■□ 3.64
SYNPO-203ENST00000518872 BEND3Q5T5X7 828 aa37.8■■■■□ 3.64
SYNPO-203ENST00000518872 PASKQ96RG2 1323 aa37.8■■■■□ 3.64
SYNPO-203ENST00000518872 YDJCA8MPS7 323 aa37.79■■■■□ 3.64
SYNPO-203ENST00000518872 SLFN5Q08AF3 891 aa37.79■■■■□ 3.64
SYNPO-203ENST00000518872 TNIP1Q15025 636 aa37.79■■■■□ 3.64
SYNPO-203ENST00000518872 KLRG1Q96E93 195 aa37.79■■■■□ 3.64
SYNPO-203ENST00000518872 GREM2Q9H772 168 aa37.79■■■■□ 3.64
SYNPO-203ENST00000518872 F6X3S4 739 aa37.78■■■■□ 3.64
SYNPO-203ENST00000518872 EPS15P42566 896 aa37.78■■■■□ 3.64
SYNPO-203ENST00000518872 GPRC5DQ9NZD1 345 aa37.78■■■■□ 3.64
SYNPO-203ENST00000518872 SPEF2Q9C093 1822 aa37.77■■■■□ 3.64
SYNPO-203ENST00000518872 BSDC1Q9NW68 430 aaPredicted RBP37.77■■■■□ 3.64
SYNPO-203ENST00000518872 ITGBL1O95965 494 aaPredicted RBP37.76■■■■□ 3.64
SYNPO-203ENST00000518872 CSF1RP07333 972 aa37.76■■■■□ 3.64
SYNPO-203ENST00000518872 USP50Q70EL3 339 aaPredicted RBP37.76■■■■□ 3.64
SYNPO-203ENST00000518872 ANKIB1Q9P2G1 1089 aa37.76■■■■□ 3.64
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms