RNA–Protein interactions for RNA: ENST00000515261.1

PDLIM3-211, Transcript of PDZ and LIM domain 3, humanhuman

TSL 2

Gene PDLIM3, Length 622 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-211ENST00000515261 CCDC85CA6NKD9 419 aa20.54■□□□□ 0.88
PDLIM3-211ENST00000515261 HCLS1P14317 486 aaPredicted RBP20.54■□□□□ 0.88
PDLIM3-211ENST00000515261 KIAA2012Q0VF49 1180 aa20.54■□□□□ 0.88
PDLIM3-211ENST00000515261 TNIP1Q15025 636 aa20.54■□□□□ 0.88
PDLIM3-211ENST00000515261 FAM161AQ3B820 660 aa20.54■□□□□ 0.88
PDLIM3-211ENST00000515261 DDX46Q7L014 1031 aaKnown RBP20.54■□□□□ 0.88
PDLIM3-211ENST00000515261 GLIS2Q9BZE0 524 aaPredicted RBP20.54■□□□□ 0.88
PDLIM3-211ENST00000515261 TSKSQ9UJT2 592 aa20.54■□□□□ 0.88
PDLIM3-211ENST00000515261 TAF1P21675 1872 aa20.54■□□□□ 0.88
PDLIM3-211ENST00000515261 RAD17O75943 681 aa20.53■□□□□ 0.88
PDLIM3-211ENST00000515261 RIPK4P57078 832 aa20.53■□□□□ 0.88
PDLIM3-211ENST00000515261 AIMP1Q12904 312 aaKnown RBP20.53■□□□□ 0.88
PDLIM3-211ENST00000515261 COPS6Q7L5N1 327 aa20.53■□□□□ 0.88
PDLIM3-211ENST00000515261 NLRP10Q86W26 655 aa20.53■□□□□ 0.88
PDLIM3-211ENST00000515261 ZNF408Q9H9D4 720 aa20.53■□□□□ 0.88
PDLIM3-211ENST00000515261 ZC3H15Q8WU90 426 aaKnown RBP20.52■□□□□ 0.88
PDLIM3-211ENST00000515261 NECTIN2Q92692 538 aa20.52■□□□□ 0.88
PDLIM3-211ENST00000515261 HHIPL1Q96JK4 782 aa20.52■□□□□ 0.88
PDLIM3-211ENST00000515261 BABAM1Q9NWV8 329 aa20.52■□□□□ 0.88
PDLIM3-211ENST00000515261 PGAP2Q9UHJ9 254 aa20.52■□□□□ 0.88
PDLIM3-211ENST00000515261 TRMT112Q9UI30 125 aaKnown RBP20.52■□□□□ 0.88
PDLIM3-211ENST00000515261 CA12O43570 354 aa20.51■□□□□ 0.87
PDLIM3-211ENST00000515261 GRAPQ13588 217 aa20.51■□□□□ 0.87
PDLIM3-211ENST00000515261 CDC37L1Q7L3B6 337 aa20.51■□□□□ 0.87
PDLIM3-211ENST00000515261 GRAPLQ8TC17 118 aaPredicted RBP20.51■□□□□ 0.87
PDLIM3-211ENST00000515261 XAGE3Q8WTP9 111 aa20.51■□□□□ 0.87
PDLIM3-211ENST00000515261 SH3TC1Q8TE82 1336 aa20.51■□□□□ 0.87
PDLIM3-211ENST00000515261 HIRAP54198 1017 aaPredicted RBP20.5■□□□□ 0.87
PDLIM3-211ENST00000515261 TCIRG1Q13488 830 aa20.5■□□□□ 0.87
PDLIM3-211ENST00000515261 CNOT7Q9UIV1 285 aaKnown RBP20.5■□□□□ 0.87
PDLIM3-211ENST00000515261 CASP8AP2Q9UKL3 1982 aa20.5■□□□□ 0.87
PDLIM3-211ENST00000515261 H7C1D1 291 aa20.49■□□□□ 0.87
PDLIM3-211ENST00000515261 LMOD3Q0VAK6 560 aa20.49■□□□□ 0.87
PDLIM3-211ENST00000515261 TMC4Q7Z404 712 aa20.49■□□□□ 0.87
PDLIM3-211ENST00000515261 TRPM4Q8TD43 1214 aa20.49■□□□□ 0.87
PDLIM3-211ENST00000515261 BRPF1P55201 1214 aaPredicted RBP20.48■□□□□ 0.87
PDLIM3-211ENST00000515261 MLLT1Q03111 559 aaPredicted RBP20.48■□□□□ 0.87
PDLIM3-211ENST00000515261 LRRC37AA6NMS7 1700 aa20.47■□□□□ 0.87
PDLIM3-211ENST00000515261 YDJCA8MPS7 323 aa20.47■□□□□ 0.87
PDLIM3-211ENST00000515261 DDX60Q8IY21 1712 aaKnown RBP20.47■□□□□ 0.87
PDLIM3-211ENST00000515261 DUOX1Q9NRD9 1551 aa20.46■□□□□ 0.87
PDLIM3-211ENST00000515261 TMPOP42166 694 aaKnown RBP20.46■□□□□ 0.87
PDLIM3-211ENST00000515261 MICALL2Q8IY33 904 aa20.46■□□□□ 0.87
PDLIM3-211ENST00000515261 POLR2AP24928 1970 aaKnown RBP20.45■□□□□ 0.86
PDLIM3-211ENST00000515261 SHTN1A0MZ66 631 aa20.45■□□□□ 0.86
PDLIM3-211ENST00000515261 WASHC4Q2M389 1173 aa20.45■□□□□ 0.86
PDLIM3-211ENST00000515261 USP48Q86UV5 1035 aa20.45■□□□□ 0.86
PDLIM3-211ENST00000515261 ZNF428Q96B54 188 aa20.45■□□□□ 0.86
PDLIM3-211ENST00000515261 CFAP44Q96MT7 982 aa20.45■□□□□ 0.86
PDLIM3-211ENST00000515261 ZBTB12Q9Y330 459 aaPredicted RBP20.45■□□□□ 0.86
PDLIM3-211ENST00000515261 RGS19P49795 217 aa20.44■□□□□ 0.86
PDLIM3-211ENST00000515261 NOGQ13253 232 aa20.44■□□□□ 0.86
PDLIM3-211ENST00000515261 DPF2Q92785 391 aa20.44■□□□□ 0.86
PDLIM3-211ENST00000515261 MCOLN1Q9GZU1 580 aa20.44■□□□□ 0.86
PDLIM3-211ENST00000515261 NSFL1CQ9UNZ2 370 aaKnown RBP20.44■□□□□ 0.86
PDLIM3-211ENST00000515261 HUNKP57058 714 aa20.43■□□□□ 0.86
PDLIM3-211ENST00000515261 SAMD7Q7Z3H4 446 aa20.43■□□□□ 0.86
PDLIM3-211ENST00000515261 DBNDD1Q9H9R9 158 aa20.43■□□□□ 0.86
PDLIM3-211ENST00000515261 CHPF2Q9P2E5 772 aa20.43■□□□□ 0.86
PDLIM3-211ENST00000515261 C6orf229H3BNL8 230 aa20.42■□□□□ 0.86
PDLIM3-211ENST00000515261 PSMD14O00487 310 aa20.42■□□□□ 0.86
PDLIM3-211ENST00000515261 RIMBP2O15034 1052 aa20.42■□□□□ 0.86
PDLIM3-211ENST00000515261 NEUROD2Q15784 382 aa20.42■□□□□ 0.86
PDLIM3-211ENST00000515261 KRT24Q2M2I5 525 aa20.42■□□□□ 0.86
PDLIM3-211ENST00000515261 PLBD2Q8NHP8 589 aa20.42■□□□□ 0.86
PDLIM3-211ENST00000515261 LAS1LQ9Y4W2 734 aaKnown RBP20.42■□□□□ 0.86
PDLIM3-211ENST00000515261 SLC34A2O95436 690 aa20.41■□□□□ 0.86
PDLIM3-211ENST00000515261 DGKZQ13574 1117 aa20.41■□□□□ 0.86
PDLIM3-211ENST00000515261 TBC1D10BQ4KMP7 808 aaPredicted RBP20.41■□□□□ 0.86
PDLIM3-211ENST00000515261 ANKRD13DQ6ZTN6 518 aa20.41■□□□□ 0.86
PDLIM3-211ENST00000515261 CELF1Q92879 486 aaKnown RBP20.41■□□□□ 0.86
PDLIM3-211ENST00000515261 FAM89AQ96GI7 184 aa20.41■□□□□ 0.86
PDLIM3-211ENST00000515261 CHL1O00533 1208 aa20.4■□□□□ 0.86
PDLIM3-211ENST00000515261 SF3B3Q15393 1217 aaKnown RBP20.4■□□□□ 0.86
PDLIM3-211ENST00000515261 HDGFL1Q5TGJ6 251 aa20.4■□□□□ 0.86
PDLIM3-211ENST00000515261 KRT26Q7Z3Y9 468 aa20.4■□□□□ 0.86
PDLIM3-211ENST00000515261 ATP5J2-PTCD1G3V325 749 aa20.39■□□□□ 0.85
PDLIM3-211ENST00000515261 RPS12P25398 132 aaKnown RBP20.39■□□□□ 0.85
PDLIM3-211ENST00000515261 RALBP1Q15311 655 aa20.39■□□□□ 0.85
PDLIM3-211ENST00000515261 RBM26Q5T8P6 1007 aaKnown RBP20.39■□□□□ 0.85
PDLIM3-211ENST00000515261 DLK2Q6UY11 383 aa20.39■□□□□ 0.85
PDLIM3-211ENST00000515261 C2orf69Q8N8R5 385 aa20.39■□□□□ 0.85
PDLIM3-211ENST00000515261 DCPSQ96C86 337 aaKnown RBP20.39■□□□□ 0.85
PDLIM3-211ENST00000515261 ZIC5Q96T25 663 aa20.39■□□□□ 0.85
PDLIM3-211ENST00000515261 EYA3Q99504 573 aa20.39■□□□□ 0.85
PDLIM3-211ENST00000515261 ISCA1Q9BUE6 129 aa20.39■□□□□ 0.85
PDLIM3-211ENST00000515261 ECE2O60344 883 aa20.38■□□□□ 0.85
PDLIM3-211ENST00000515261 GPSM2P81274 684 aa20.38■□□□□ 0.85
PDLIM3-211ENST00000515261 DOK7Q18PE1 504 aa20.38■□□□□ 0.85
PDLIM3-211ENST00000515261 RTL5Q5HYW3 569 aaPredicted RBP20.38■□□□□ 0.85
PDLIM3-211ENST00000515261 RGMBQ6NW40 437 aa20.38■□□□□ 0.85
PDLIM3-211ENST00000515261 CCDC146Q8IYE0 955 aa20.38■□□□□ 0.85
PDLIM3-211ENST00000515261 GBA2Q9HCG7 927 aaPredicted RBP20.38■□□□□ 0.85
PDLIM3-211ENST00000515261 DBF4Q9UBU7 674 aaPredicted RBP20.38■□□□□ 0.85
PDLIM3-211ENST00000515261 POLLQ9UGP5 575 aa20.38■□□□□ 0.85
PDLIM3-211ENST00000515261 EGFRP00533 1210 aa20.37■□□□□ 0.85
PDLIM3-211ENST00000515261 AKAP11Q9UKA4 1901 aa20.37■□□□□ 0.85
PDLIM3-211ENST00000515261 ADM5C9JUS6 153 aa20.36■□□□□ 0.85
PDLIM3-211ENST00000515261 HOXB7P09629 217 aa20.36■□□□□ 0.85
PDLIM3-211ENST00000515261 CCDC102AQ96A19 550 aa20.36■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms