RNA–Protein interactions for RNA: ENST00000514335.1

NIPBL-208, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 2

Gene NIPBL, Length 2,948 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-208ENST00000514335 ALDH1L2Q3SY69 923 aa8.54□□□□□ -1.04
NIPBL-208ENST00000514335 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.54□□□□□ -1.04
NIPBL-208ENST00000514335 ZNF710Q8N1W2 664 aa8.54□□□□□ -1.04
NIPBL-208ENST00000514335 SCYL1Q96KG9 808 aa8.54□□□□□ -1.04
NIPBL-208ENST00000514335 SFMBT1Q9UHJ3 866 aa8.54□□□□□ -1.04
NIPBL-208ENST00000514335 GOLGA6L6A8MZA4 724 aa8.53□□□□□ -1.04
NIPBL-208ENST00000514335 IQCJ-SCHIP1C9J366 451 aaPredicted RBP8.53□□□□□ -1.04
NIPBL-208ENST00000514335 GOLGA6L22H0YM25 854 aa8.53□□□□□ -1.04
NIPBL-208ENST00000514335 PPP1R15AO75807 674 aaPredicted RBP8.53□□□□□ -1.04
NIPBL-208ENST00000514335 TBC1D10BQ4KMP7 808 aaPredicted RBP8.53□□□□□ -1.04
NIPBL-208ENST00000514335 TTC39BQ5VTQ0 682 aaPredicted RBP8.53□□□□□ -1.04
NIPBL-208ENST00000514335 AP1ARQ63HQ0 302 aa8.53□□□□□ -1.04
NIPBL-208ENST00000514335 MCTP2Q6DN12 878 aa8.53□□□□□ -1.04
NIPBL-208ENST00000514335 BICD1Q96G01 975 aa8.53□□□□□ -1.04
NIPBL-208ENST00000514335 TMEM165Q9HC07 324 aa8.53□□□□□ -1.04
NIPBL-208ENST00000514335 MARF1Q9Y4F3 1742 aaKnown RBP8.53□□□□□ -1.04
NIPBL-208ENST00000514335 hCG_2014768A0A024R1R8 64 aa8.53□□□□□ -1.04
NIPBL-208ENST00000514335 ZNF24P17028 368 aa8.53□□□□□ -1.04
NIPBL-208ENST00000514335 ATICP31939 592 aa8.53□□□□□ -1.04
NIPBL-208ENST00000514335 PRPF4BQ13523 1007 aaKnown RBP8.53□□□□□ -1.04
NIPBL-208ENST00000514335 NLRP13Q86W25 1043 aa8.53□□□□□ -1.04
NIPBL-208ENST00000514335 RGPD3A6NKT7 1758 aaPredicted RBP8.53□□□□□ -1.04
NIPBL-208ENST00000514335 RGPD4Q7Z3J3 1758 aa8.53□□□□□ -1.04
NIPBL-208ENST00000514335 MYO1BO43795 1136 aa8.53□□□□□ -1.04
NIPBL-208ENST00000514335 ATXN8OSP0DMR3 200 aa8.53□□□□□ -1.04
NIPBL-208ENST00000514335 TRAF1Q13077 416 aa8.53□□□□□ -1.04
NIPBL-208ENST00000514335 TSR1Q2NL82 804 aaKnown RBP8.53□□□□□ -1.04
NIPBL-208ENST00000514335 NLGN1Q8N2Q7 840 aa8.53□□□□□ -1.04
NIPBL-208ENST00000514335 IL17RAQ96F46 866 aa8.53□□□□□ -1.04
NIPBL-208ENST00000514335 IFT122Q9HBG6 1241 aa8.53□□□□□ -1.04
NIPBL-208ENST00000514335 TMCC3Q9ULS5 477 aa8.53□□□□□ -1.04
NIPBL-208ENST00000514335 MTA2O94776 668 aa8.52□□□□□ -1.05
NIPBL-208ENST00000514335 ATP2B1P20020 1258 aa8.52□□□□□ -1.05
NIPBL-208ENST00000514335 HOXA10P31260 410 aaPredicted RBP8.52□□□□□ -1.05
NIPBL-208ENST00000514335 CLK1P49759 484 aaKnown RBP8.52□□□□□ -1.05
NIPBL-208ENST00000514335 WASHC5Q12768 1159 aa8.52□□□□□ -1.05
NIPBL-208ENST00000514335 E2F4Q16254 413 aa8.52□□□□□ -1.05
NIPBL-208ENST00000514335 ALKBH2Q6NS38 261 aa8.52□□□□□ -1.05
NIPBL-208ENST00000514335 UBE2Q1Q7Z7E8 422 aa8.52□□□□□ -1.05
NIPBL-208ENST00000514335 CATIPQ7Z7H3 387 aa8.52□□□□□ -1.05
NIPBL-208ENST00000514335 CHCHD4Q8N4Q1 142 aa8.52□□□□□ -1.05
NIPBL-208ENST00000514335 SLC43A3Q8NBI5 491 aa8.52□□□□□ -1.05
NIPBL-208ENST00000514335 CCDC26Q8TAB7 109 aa8.52□□□□□ -1.05
NIPBL-208ENST00000514335 FEZ1Q99689 392 aa8.52□□□□□ -1.05
NIPBL-208ENST00000514335 SETBP1Q9Y6X0 1596 aa8.52□□□□□ -1.05
NIPBL-208ENST00000514335 ELL2O00472 640 aaPredicted RBP8.52□□□□□ -1.05
NIPBL-208ENST00000514335 FOSL1P15407 271 aa8.52□□□□□ -1.05
NIPBL-208ENST00000514335 NSUN2Q08J23 767 aaKnown RBP eCLIP8.52□□□□□ -1.05
NIPBL-208ENST00000514335 GOLGA6L1Q8N7Z2 621 aa8.52□□□□□ -1.05
NIPBL-208ENST00000514335 PHLPP1O60346 1717 aa8.52□□□□□ -1.05
NIPBL-208ENST00000514335 SPAG9O60271 1321 aaKnown RBP8.51□□□□□ -1.05
NIPBL-208ENST00000514335 IRX1P78414 480 aaPredicted RBP8.51□□□□□ -1.05
NIPBL-208ENST00000514335 CHAF1AQ13111 956 aaPredicted RBP8.51□□□□□ -1.05
NIPBL-208ENST00000514335 KCTD2Q14681 263 aa8.51□□□□□ -1.05
NIPBL-208ENST00000514335 COL19A1Q14993 1142 aa8.51□□□□□ -1.05
NIPBL-208ENST00000514335 AGAP9Q5VTM2 703 aa8.51□□□□□ -1.05
NIPBL-208ENST00000514335 HHATQ5VTY9 493 aa8.51□□□□□ -1.05
NIPBL-208ENST00000514335 FAXDC2Q96IV6 333 aa8.51□□□□□ -1.05
NIPBL-208ENST00000514335 UPF2Q9HAU5 1272 aaKnown RBP8.51□□□□□ -1.05
NIPBL-208ENST00000514335 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.51□□□□□ -1.05
NIPBL-208ENST00000514335 VCAM1P19320 739 aa8.51□□□□□ -1.05
NIPBL-208ENST00000514335 MAP2K2P36507 400 aa8.51□□□□□ -1.05
NIPBL-208ENST00000514335 MCM6Q14566 821 aa8.51□□□□□ -1.05
NIPBL-208ENST00000514335 PTPROQ16827 1216 aa8.51□□□□□ -1.05
NIPBL-208ENST00000514335 RPUSD2Q8IZ73 545 aaKnown RBP8.51□□□□□ -1.05
NIPBL-208ENST00000514335 USP33Q8TEY7 942 aa8.51□□□□□ -1.05
NIPBL-208ENST00000514335 SPATA31A6Q5VVP1 1343 aa8.51□□□□□ -1.05
NIPBL-208ENST00000514335 CDKL5O76039 1030 aa8.5□□□□□ -1.05
NIPBL-208ENST00000514335 SFMBT2Q5VUG0 894 aa8.5□□□□□ -1.05
NIPBL-208ENST00000514335 CEP63Q96MT8 703 aa8.5□□□□□ -1.05
NIPBL-208ENST00000514335 UNC45AQ9H3U1 944 aa8.5□□□□□ -1.05
NIPBL-208ENST00000514335 QTRT2Q9H974 415 aaKnown RBP8.5□□□□□ -1.05
NIPBL-208ENST00000514335 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.5□□□□□ -1.05
NIPBL-208ENST00000514335 SCINQ9Y6U3 715 aa8.5□□□□□ -1.05
NIPBL-208ENST00000514335 ROBO1Q9Y6N7 1651 aa8.5□□□□□ -1.05
NIPBL-208ENST00000514335 NINLQ9Y2I6 1382 aa8.5□□□□□ -1.05
NIPBL-208ENST00000514335 HSP90AB1P08238 724 aaKnown RBP8.5□□□□□ -1.05
NIPBL-208ENST00000514335 NT5DC4Q86YG4 428 aa8.5□□□□□ -1.05
NIPBL-208ENST00000514335 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.5□□□□□ -1.05
NIPBL-208ENST00000514335 STAG1Q8WVM7 1258 aa8.5□□□□□ -1.05
NIPBL-208ENST00000514335 INCENPQ9NQS7 918 aa8.5□□□□□ -1.05
NIPBL-208ENST00000514335 IMPDH2P12268 514 aa8.5□□□□□ -1.05
NIPBL-208ENST00000514335 NAALADL2Q58DX5 795 aa8.5□□□□□ -1.05
NIPBL-208ENST00000514335 TRIM42Q8IWZ5 723 aa8.5□□□□□ -1.05
NIPBL-208ENST00000514335 KIAA1958Q8N8K9 716 aa8.5□□□□□ -1.05
NIPBL-208ENST00000514335 GABPB2Q8TAK5 448 aaPredicted RBP8.5□□□□□ -1.05
NIPBL-208ENST00000514335 DHX38Q92620 1227 aaKnown RBP8.5□□□□□ -1.05
NIPBL-208ENST00000514335 PLEKHG4BQ96PX9 1271 aa8.5□□□□□ -1.05
NIPBL-208ENST00000514335 DEF6Q9H4E7 631 aa8.5□□□□□ -1.05
NIPBL-208ENST00000514335 LMCD1Q9NZU5 365 aa8.5□□□□□ -1.05
NIPBL-208ENST00000514335 NOS1P29475 1434 aa8.49□□□□□ -1.05
NIPBL-208ENST00000514335 KRT38O76015 456 aa8.49□□□□□ -1.05
NIPBL-208ENST00000514335 EGFLAMQ63HQ2 1017 aa8.49□□□□□ -1.05
NIPBL-208ENST00000514335 KLHL10Q6JEL2 608 aa8.49□□□□□ -1.05
NIPBL-208ENST00000514335 TFIP11Q9UBB9 837 aaKnown RBP8.49□□□□□ -1.05
NIPBL-208ENST00000514335 COG6Q9Y2V7 657 aa8.49□□□□□ -1.05
NIPBL-208ENST00000514335 TRPM2O94759 1503 aa8.49□□□□□ -1.05
NIPBL-208ENST00000514335 F8VZ95 297 aa8.49□□□□□ -1.05
NIPBL-208ENST00000514335 FMNL1O95466 1100 aaPredicted RBP8.49□□□□□ -1.05
NIPBL-208ENST00000514335 HSPA5P11021 654 aaKnown RBP8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 75.1 ms