RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 NEXNQ0ZGT2 675 aa11.37□□□□□ -0.59
VCAN-210ENST00000513960 G3BP1Q13283 466 aaKnown RBP eCLIP11.37□□□□□ -0.59
VCAN-210ENST00000513960 TAF3Q5VWG9 929 aa11.37□□□□□ -0.59
VCAN-210ENST00000513960 LINS1Q8NG48 757 aa11.37□□□□□ -0.59
VCAN-210ENST00000513960 FMNL2Q96PY5 1086 aa11.37□□□□□ -0.59
VCAN-210ENST00000513960 ECHDC1Q9NTX5 307 aa11.37□□□□□ -0.59
VCAN-210ENST00000513960 POLR3GO15318 223 aaPredicted RBP11.37□□□□□ -0.59
VCAN-210ENST00000513960 PPFIA3O75145 1194 aa11.37□□□□□ -0.59
VCAN-210ENST00000513960 ZKSCAN1P17029 563 aaPredicted RBP11.37□□□□□ -0.59
VCAN-210ENST00000513960 LIG1P18858 919 aa11.37□□□□□ -0.59
VCAN-210ENST00000513960 HOMER1Q86YM7 354 aa11.37□□□□□ -0.59
VCAN-210ENST00000513960 CYP46A1Q9Y6A2 500 aa11.37□□□□□ -0.59
VCAN-210ENST00000513960 RAD50Q92878 1312 aa11.37□□□□□ -0.59
VCAN-210ENST00000513960 PRAMEF22A3QJZ6 481 aa11.37□□□□□ -0.59
VCAN-210ENST00000513960 MTX1Q13505 466 aa11.37□□□□□ -0.59
VCAN-210ENST00000513960 GTF3C6Q969F1 213 aa11.37□□□□□ -0.59
VCAN-210ENST00000513960 DDX21Q9NR30 783 aaKnown RBP eCLIP11.37□□□□□ -0.59
VCAN-210ENST00000513960 PA2G4Q9UQ80 394 aaKnown RBP11.37□□□□□ -0.59
VCAN-210ENST00000513960 GRM8O00222 908 aa11.36□□□□□ -0.59
VCAN-210ENST00000513960 LARGE1O95461 756 aa11.36□□□□□ -0.59
VCAN-210ENST00000513960 TATP17735 454 aaPredicted RBP11.36□□□□□ -0.59
VCAN-210ENST00000513960 GTF2E1P29083 439 aaPredicted RBP11.36□□□□□ -0.59
VCAN-210ENST00000513960 ELF2Q15723 593 aa11.36□□□□□ -0.59
VCAN-210ENST00000513960 AACSQ86V21 672 aa11.36□□□□□ -0.59
VCAN-210ENST00000513960 IL25Q9H293 177 aa11.36□□□□□ -0.59
VCAN-210ENST00000513960 CBX8Q9HC52 389 aa11.36□□□□□ -0.59
VCAN-210ENST00000513960 SNX14Q9Y5W7 946 aa11.36□□□□□ -0.59
VCAN-210ENST00000513960 RASEFQ8IZ41 740 aa11.36□□□□□ -0.59
VCAN-210ENST00000513960 ZFP91Q96JP5 570 aaPredicted RBP11.36□□□□□ -0.59
VCAN-210ENST00000513960 C19orf44Q9H6X5 657 aa11.36□□□□□ -0.59
VCAN-210ENST00000513960 ATF3P18847 181 aa11.36□□□□□ -0.59
VCAN-210ENST00000513960 CCDC9Q9Y3X0 531 aaKnown RBP11.36□□□□□ -0.59
VCAN-210ENST00000513960 MED1Q15648 1581 aaPredicted RBP11.35□□□□□ -0.59
VCAN-210ENST00000513960 SLC39A6Q13433 755 aa11.35□□□□□ -0.59
VCAN-210ENST00000513960 RUFY3Q7L099 469 aa11.35□□□□□ -0.59
VCAN-210ENST00000513960 ZNF215Q9UL58 517 aaPredicted RBP11.35□□□□□ -0.59
VCAN-210ENST00000513960 PXDNQ92626 1479 aa11.35□□□□□ -0.59
VCAN-210ENST00000513960 MYL6BP14649 208 aa11.35□□□□□ -0.59
VCAN-210ENST00000513960 GNL2Q13823 731 aaKnown RBP11.35□□□□□ -0.59
VCAN-210ENST00000513960 DDX11Q96FC9 970 aa11.35□□□□□ -0.59
VCAN-210ENST00000513960 TIGD1Q96MW7 591 aa11.35□□□□□ -0.59
VCAN-210ENST00000513960 ST7Q9NRC1 585 aa11.35□□□□□ -0.59
VCAN-210ENST00000513960 ERBB3P21860 1342 aa11.35□□□□□ -0.59
VCAN-210ENST00000513960 A0A087WWV3 80 aa11.35□□□□□ -0.59
VCAN-210ENST00000513960 LARP1Q6PKG0 1096 aaKnown RBP11.35□□□□□ -0.59
VCAN-210ENST00000513960 ARID5BQ14865 1188 aa11.35□□□□□ -0.59
VCAN-210ENST00000513960 ZSCAN25Q6NSZ9 544 aa11.35□□□□□ -0.59
VCAN-210ENST00000513960 ZNF790Q6PG37 636 aa11.35□□□□□ -0.59
VCAN-210ENST00000513960 FAM177A1Q8N128 213 aaPredicted RBP11.35□□□□□ -0.59
VCAN-210ENST00000513960 CCAR2Q8N163 923 aaKnown RBP11.35□□□□□ -0.59
VCAN-210ENST00000513960 OVOS2A0A0G2JMS6 1433 aa11.34□□□□□ -0.59
VCAN-210ENST00000513960 TTC5Q8N0Z6 440 aa11.34□□□□□ -0.59
VCAN-210ENST00000513960 LSG1Q9H089 658 aaKnown RBP11.34□□□□□ -0.59
VCAN-210ENST00000513960 SKILP12757 684 aa11.34□□□□□ -0.59
VCAN-210ENST00000513960 EVI5LQ96CN4 794 aa11.34□□□□□ -0.59
VCAN-210ENST00000513960 SUCLG2Q96I99 432 aa11.34□□□□□ -0.59
VCAN-210ENST00000513960 USP42Q9H9J4 1324 aaKnown RBP11.34□□□□□ -0.59
VCAN-210ENST00000513960 TTC6Q86TZ1 520 aa11.34□□□□□ -0.59
VCAN-210ENST00000513960 ANKRD7Q92527 254 aa11.34□□□□□ -0.59
VCAN-210ENST00000513960 SIL1Q9H173 461 aa11.34□□□□□ -0.59
VCAN-210ENST00000513960 BICC1Q9H694 974 aaKnown RBP11.34□□□□□ -0.59
VCAN-210ENST00000513960 CTNNA3Q9UI47 895 aa11.34□□□□□ -0.59
VCAN-210ENST00000513960 PAXBP1Q9Y5B6 917 aa11.34□□□□□ -0.59
VCAN-210ENST00000513960 RGPD2P0DJD1 1756 aa11.33□□□□□ -0.6
VCAN-210ENST00000513960 KDM3BQ7LBC6 1761 aa11.33□□□□□ -0.6
VCAN-210ENST00000513960 SMC2O95347 1197 aa11.33□□□□□ -0.6
VCAN-210ENST00000513960 GABPB1Q06547 395 aaPredicted RBP11.33□□□□□ -0.6
VCAN-210ENST00000513960 CDC37L1Q7L3B6 337 aa11.33□□□□□ -0.6
VCAN-210ENST00000513960 NFATC2IPQ8NCF5 419 aa11.33□□□□□ -0.6
VCAN-210ENST00000513960 IL17RAQ96F46 866 aa11.33□□□□□ -0.6
VCAN-210ENST00000513960 USP16Q9Y5T5 823 aa11.33□□□□□ -0.6
VCAN-210ENST00000513960 N4BP2Q86UW6 1770 aaPredicted RBP11.33□□□□□ -0.6
VCAN-210ENST00000513960 NRDCO43847 1150 aa11.33□□□□□ -0.6
VCAN-210ENST00000513960 ZNF75DP51815 510 aa11.33□□□□□ -0.6
VCAN-210ENST00000513960 ZNF397Q8NF99 534 aaPredicted RBP11.33□□□□□ -0.6
VCAN-210ENST00000513960 CACTINQ8WUQ7 758 aaKnown RBP11.33□□□□□ -0.6
VCAN-210ENST00000513960 SLC52A2Q9HAB3 445 aa11.33□□□□□ -0.6
VCAN-210ENST00000513960 MTMR6Q9Y217 621 aa11.33□□□□□ -0.6
VCAN-210ENST00000513960 MRVI1Q9Y6F6 885 aa11.33□□□□□ -0.6
VCAN-210ENST00000513960 LMO7Q8WWI1 1683 aa11.33□□□□□ -0.6
VCAN-210ENST00000513960 HIP1O00291 1037 aa11.33□□□□□ -0.6
VCAN-210ENST00000513960 NOL10Q9BSC4 688 aaKnown RBP11.33□□□□□ -0.6
VCAN-210ENST00000513960 CCDC8Q9H0W5 538 aaPredicted RBP11.33□□□□□ -0.6
VCAN-210ENST00000513960 NPHP3Q7Z494 1330 aa11.32□□□□□ -0.6
VCAN-210ENST00000513960 IFNL2Q8IZJ0 200 aa11.32□□□□□ -0.6
VCAN-210ENST00000513960 ERCC4Q92889 916 aaPredicted RBP11.32□□□□□ -0.6
VCAN-210ENST00000513960 RPAP1Q9BWH6 1393 aaPredicted RBP11.32□□□□□ -0.6
VCAN-210ENST00000513960 HEG1Q9ULI3 1381 aa11.32□□□□□ -0.6
VCAN-210ENST00000513960 COPS6Q7L5N1 327 aa11.32□□□□□ -0.6
VCAN-210ENST00000513960 KIF18AQ8NI77 898 aa11.32□□□□□ -0.6
VCAN-210ENST00000513960 XAGE3Q8WTP9 111 aa11.32□□□□□ -0.6
VCAN-210ENST00000513960 SLIT3O75094 1523 aa11.32□□□□□ -0.6
VCAN-210ENST00000513960 MNS1Q8NEH6 495 aa11.32□□□□□ -0.6
VCAN-210ENST00000513960 MYD88Q99836 296 aa11.32□□□□□ -0.6
VCAN-210ENST00000513960 TRIM34Q9BYJ4 488 aa11.32□□□□□ -0.6
VCAN-210ENST00000513960 TMX1Q9H3N1 280 aa11.32□□□□□ -0.6
VCAN-210ENST00000513960 C1orf167Q5SNV9 1468 aa11.31□□□□□ -0.6
VCAN-210ENST00000513960 USP27XA6NNY8 438 aa11.31□□□□□ -0.6
VCAN-210ENST00000513960 ADCK5Q3MIX3 580 aa11.31□□□□□ -0.6
VCAN-210ENST00000513960 CCDC69A6NI79 296 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms