RNA–Protein interactions for RNA: ENST00000512656.1

USP46-208, Transcript of ubiquitin specific peptidase 46, humanhuman

TSL 3

Gene USP46, Length 467 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP46-208ENST00000512656 MMP10P09238 476 aa9.73□□□□□ -0.85
USP46-208ENST00000512656 RFC4P35249 363 aa9.73□□□□□ -0.85
USP46-208ENST00000512656 SMIM5Q71RC9 77 aa9.73□□□□□ -0.85
USP46-208ENST00000512656 AEBP1Q8IUX7 1158 aa9.73□□□□□ -0.85
USP46-208ENST00000512656 CNTNAP4Q9C0A0 1308 aa9.73□□□□□ -0.85
USP46-208ENST00000512656 KDRP35968 1356 aa9.73□□□□□ -0.85
USP46-208ENST00000512656 RPS6KA4O75676 772 aa9.72□□□□□ -0.85
USP46-208ENST00000512656 CD46P15529 392 aa9.72□□□□□ -0.85
USP46-208ENST00000512656 IL13P35225 146 aa9.72□□□□□ -0.85
USP46-208ENST00000512656 PRR20EP86478 221 aa9.72□□□□□ -0.85
USP46-208ENST00000512656 PRR20CP86479 221 aa9.72□□□□□ -0.85
USP46-208ENST00000512656 PRR20DP86480 221 aa9.72□□□□□ -0.85
USP46-208ENST00000512656 PRR20BP86481 221 aa9.72□□□□□ -0.85
USP46-208ENST00000512656 PRR20AP86496 221 aa9.72□□□□□ -0.85
USP46-208ENST00000512656 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.72□□□□□ -0.85
USP46-208ENST00000512656 NFATC2IPQ8NCF5 419 aa9.72□□□□□ -0.85
USP46-208ENST00000512656 SLC27A5Q9Y2P5 690 aa9.72□□□□□ -0.85
USP46-208ENST00000512656 KDM6AO15550 1401 aaPredicted RBP9.72□□□□□ -0.85
USP46-208ENST00000512656 PPEF1O14829 653 aaPredicted RBP9.71□□□□□ -0.86
USP46-208ENST00000512656 PTCD1O75127 700 aaKnown RBP9.71□□□□□ -0.86
USP46-208ENST00000512656 TGFB2P61812 414 aa9.71□□□□□ -0.86
USP46-208ENST00000512656 AKAP4Q5JQC9 854 aa9.71□□□□□ -0.86
USP46-208ENST00000512656 SLC4A9Q96Q91 983 aa9.71□□□□□ -0.86
USP46-208ENST00000512656 CCDC87Q9NVE4 849 aa9.71□□□□□ -0.86
USP46-208ENST00000512656 KIF7Q2M1P5 1343 aa9.71□□□□□ -0.86
USP46-208ENST00000512656 CEP350Q5VT06 3117 aa9.71□□□□□ -0.86
USP46-208ENST00000512656 ZNF831Q5JPB2 1677 aa9.71□□□□□ -0.86
USP46-208ENST00000512656 BRICD5Q6PL45 260 aa9.7□□□□□ -0.86
USP46-208ENST00000512656 LIAT1Q6ZQX7 453 aa9.7□□□□□ -0.86
USP46-208ENST00000512656 GPBP1L1Q9HC44 474 aaPredicted RBP9.7□□□□□ -0.86
USP46-208ENST00000512656 PARP3Q9Y6F1 533 aa9.7□□□□□ -0.86
USP46-208ENST00000512656 ATP10DQ9P241 1426 aa9.7□□□□□ -0.86
USP46-208ENST00000512656 GYS1P13807 737 aa9.69□□□□□ -0.86
USP46-208ENST00000512656 CRKLP46109 303 aaKnown RBP9.69□□□□□ -0.86
USP46-208ENST00000512656 USP46P62068 366 aa9.69□□□□□ -0.86
USP46-208ENST00000512656 Q3C1V9 767 aa9.69□□□□□ -0.86
USP46-208ENST00000512656 MSS51Q4VC12 460 aa9.69□□□□□ -0.86
USP46-208ENST00000512656 TRIM67Q6ZTA4 783 aa9.69□□□□□ -0.86
USP46-208ENST00000512656 LCE2BO14633 110 aa9.68□□□□□ -0.86
USP46-208ENST00000512656 DIAPH1O60610 1272 aaKnown RBP9.68□□□□□ -0.86
USP46-208ENST00000512656 RPIAP49247 311 aa9.68□□□□□ -0.86
USP46-208ENST00000512656 CCDC102AQ96A19 550 aa9.68□□□□□ -0.86
USP46-208ENST00000512656 SLC52A2Q9HAB3 445 aa9.68□□□□□ -0.86
USP46-208ENST00000512656 WWC3Q9ULE0 1092 aa9.68□□□□□ -0.86
USP46-208ENST00000512656 ADCY9O60503 1353 aa9.67□□□□□ -0.86
USP46-208ENST00000512656 RNMTO43148 476 aaKnown RBP9.67□□□□□ -0.86
USP46-208ENST00000512656 HMOX1P09601 288 aa9.67□□□□□ -0.86
USP46-208ENST00000512656 CLCN1P35523 988 aa9.67□□□□□ -0.86
USP46-208ENST00000512656 MDM2Q00987 491 aaPredicted RBP9.67□□□□□ -0.86
USP46-208ENST00000512656 ZNF697Q5TEC3 545 aa9.67□□□□□ -0.86
USP46-208ENST00000512656 FAM160A2Q8N612 972 aaPredicted RBP9.67□□□□□ -0.86
USP46-208ENST00000512656 GPCPD1Q9NPB8 672 aa9.67□□□□□ -0.86
USP46-208ENST00000512656 BCS1LQ9Y276 419 aa9.67□□□□□ -0.86
USP46-208ENST00000512656 PXDNLA1KZ92 1463 aa9.66□□□□□ -0.86
USP46-208ENST00000512656 C10orf71Q711Q0 1435 aa9.66□□□□□ -0.86
USP46-208ENST00000512656 NPC1L1Q9UHC9 1359 aa9.66□□□□□ -0.86
USP46-208ENST00000512656 USP42Q9H9J4 1324 aaKnown RBP9.66□□□□□ -0.86
USP46-208ENST00000512656 A0A0G2JLW4 131 aa9.66□□□□□ -0.86
USP46-208ENST00000512656 PER1O15534 1290 aaPredicted RBP9.66□□□□□ -0.86
USP46-208ENST00000512656 KDM4AO75164 1064 aa9.66□□□□□ -0.86
USP46-208ENST00000512656 PLA2G2CQ5R387 149 aa9.66□□□□□ -0.86
USP46-208ENST00000512656 CC2D1BQ5T0F9 858 aaKnown RBP9.66□□□□□ -0.86
USP46-208ENST00000512656 CICQ96RK0 1608 aaPredicted RBP9.66□□□□□ -0.86
USP46-208ENST00000512656 COL5A3P25940 1745 aaPredicted RBP9.65□□□□□ -0.86
USP46-208ENST00000512656 DPEP1P16444 411 aa9.65□□□□□ -0.86
USP46-208ENST00000512656 ARHGAP27Q6ZUM4 889 aa9.65□□□□□ -0.86
USP46-208ENST00000512656 DNAJC10Q8IXB1 793 aa9.65□□□□□ -0.86
USP46-208ENST00000512656 ZNF526Q8TF50 670 aaPredicted RBP9.65□□□□□ -0.86
USP46-208ENST00000512656 LGR6Q9HBX8 967 aa9.65□□□□□ -0.86
USP46-208ENST00000512656 PIM2Q9P1W9 311 aa9.65□□□□□ -0.86
USP46-208ENST00000512656 GDF9O60383 454 aa9.64□□□□□ -0.87
USP46-208ENST00000512656 DGAT1O75907 488 aa9.64□□□□□ -0.87
USP46-208ENST00000512656 STARD3NLO95772 234 aa9.64□□□□□ -0.87
USP46-208ENST00000512656 MTHFSDQ2M296 383 aaKnown RBP9.64□□□□□ -0.87
USP46-208ENST00000512656 INTS5Q6P9B9 1019 aaKnown RBP9.64□□□□□ -0.87
USP46-208ENST00000512656 TTC5Q8N0Z6 440 aa9.64□□□□□ -0.87
USP46-208ENST00000512656 GAS2L2Q8NHY3 880 aa9.64□□□□□ -0.87
USP46-208ENST00000512656 SRP68Q9UHB9 627 aaKnown RBP9.64□□□□□ -0.87
USP46-208ENST00000512656 SOS1Q07889 1333 aaPredicted RBP9.63□□□□□ -0.87
USP46-208ENST00000512656 MYH14Q7Z406 1995 aaKnown RBP9.63□□□□□ -0.87
USP46-208ENST00000512656 C4AP0C0L4 1744 aa9.63□□□□□ -0.87
USP46-208ENST00000512656 U2SURPO15042 1029 aaKnown RBP9.63□□□□□ -0.87
USP46-208ENST00000512656 CD2BP2O95400 341 aaKnown RBP9.63□□□□□ -0.87
USP46-208ENST00000512656 CYP19A1P11511 503 aaPredicted RBP9.63□□□□□ -0.87
USP46-208ENST00000512656 TEFQ10587 303 aa9.63□□□□□ -0.87
USP46-208ENST00000512656 SLC39A6Q13433 755 aa9.63□□□□□ -0.87
USP46-208ENST00000512656 DALRD3Q5D0E6 543 aaKnown RBP9.63□□□□□ -0.87
USP46-208ENST00000512656 CFAP53Q96M91 514 aa9.63□□□□□ -0.87
USP46-208ENST00000512656 TEX13AQ9BXU3 409 aaPredicted RBP9.63□□□□□ -0.87
USP46-208ENST00000512656 FCF1Q9Y324 198 aaKnown RBP9.63□□□□□ -0.87
USP46-208ENST00000512656 MRC1P22897 1456 aa9.63□□□□□ -0.87
USP46-208ENST00000512656 KIF13BQ9NQT8 1826 aa9.63□□□□□ -0.87
USP46-208ENST00000512656 SCN11AQ9UI33 1791 aa9.63□□□□□ -0.87
USP46-208ENST00000512656 A0A087WZG4 1122 aa9.62□□□□□ -0.87
USP46-208ENST00000512656 GNAT3A8MTJ3 354 aa9.62□□□□□ -0.87
USP46-208ENST00000512656 TM4SF1P30408 202 aa9.62□□□□□ -0.87
USP46-208ENST00000512656 DDR1Q08345 913 aa9.62□□□□□ -0.87
USP46-208ENST00000512656 USPL1Q5W0Q7 1092 aa9.62□□□□□ -0.87
USP46-208ENST00000512656 RNF19BQ6ZMZ0 732 aa9.62□□□□□ -0.87
USP46-208ENST00000512656 FAM217BQ9NTX9 383 aaPredicted RBP9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms