RNA–Protein interactions for RNA: ENST00000509774.5

PTPN20-222, Transcript of protein tyrosine phosphatase, non-receptor type 20, human

TSL 1 (best) BASIC

Gene PTPN20, Length 788 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN20-222	ENST00000509774	CCDC24	Q8N4L8	307 aa		13.47	□□□□□ -0.25
PTPN20-222	ENST00000509774	NGEF	Q8N5V2	710 aa		13.47	□□□□□ -0.25
PTPN20-222	ENST00000509774	IL17RE	Q8NFR9	667 aa		13.47	□□□□□ -0.25
PTPN20-222	ENST00000509774	BRIP1	Q9BX63	1249 aa		13.47	□□□□□ -0.25
PTPN20-222	ENST00000509774	LGR6	Q9HBX8	967 aa		13.47	□□□□□ -0.25
PTPN20-222	ENST00000509774	PDZRN3	Q9UPQ7	1066 aa		13.47	□□□□□ -0.25
PTPN20-222	ENST00000509774	TEF	Q10587	303 aa		13.46	□□□□□ -0.25
PTPN20-222	ENST00000509774	BICDL1	Q6ZP65	573 aa		13.46	□□□□□ -0.25
PTPN20-222	ENST00000509774	SAPCD2	Q86UD0	394 aa		13.46	□□□□□ -0.25
PTPN20-222	ENST00000509774	DNAJC10	Q8IXB1	793 aa		13.46	□□□□□ -0.25
PTPN20-222	ENST00000509774	NFATC2IP	Q8NCF5	419 aa		13.46	□□□□□ -0.25
PTPN20-222	ENST00000509774	HS3ST6	Q96QI5	342 aa		13.46	□□□□□ -0.25
PTPN20-222	ENST00000509774	SLC52A2	Q9HAB3	445 aa		13.46	□□□□□ -0.25
PTPN20-222	ENST00000509774	SCN7A	Q01118	1682 aa		13.46	□□□□□ -0.26
PTPN20-222	ENST00000509774	CEMIP	Q8WUJ3	1361 aa		13.45	□□□□□ -0.26
PTPN20-222	ENST00000509774	RIPK4	P57078	832 aa		13.45	□□□□□ -0.26
PTPN20-222	ENST00000509774	SOGA3	Q5TF21	947 aa		13.45	□□□□□ -0.26
PTPN20-222	ENST00000509774	C7orf43	Q8WVR3	580 aa		13.45	□□□□□ -0.26
PTPN20-222	ENST00000509774	CNKSR1	Q969H4	720 aa		13.45	□□□□□ -0.26
PTPN20-222	ENST00000509774	ZIC5	Q96T25	663 aa		13.45	□□□□□ -0.26
PTPN20-222	ENST00000509774	FZD9	O00144	591 aa		13.44	□□□□□ -0.26
PTPN20-222	ENST00000509774	FXR1	P51114	621 aa	Known RBP eCLIP	13.44	□□□□□ -0.26
PTPN20-222	ENST00000509774	PRR5L	Q6MZQ0	368 aa		13.44	□□□□□ -0.26
PTPN20-222	ENST00000509774	SPNS2	Q8IVW8	549 aa		13.44	□□□□□ -0.26
PTPN20-222	ENST00000509774	NBPF15	Q8N660	670 aa		13.44	□□□□□ -0.26
PTPN20-222	ENST00000509774	ZNF277	Q9NRM2	450 aa	Predicted RBP	13.44	□□□□□ -0.26
PTPN20-222	ENST00000509774	POTEB3	A0JP26	581 aa		13.43	□□□□□ -0.26
PTPN20-222	ENST00000509774	CYP19A1	P11511	503 aa	Predicted RBP	13.43	□□□□□ -0.26
PTPN20-222	ENST00000509774	DOK7	Q18PE1	504 aa		13.43	□□□□□ -0.26
PTPN20-222	ENST00000509774	STYK1	Q6J9G0	422 aa		13.43	□□□□□ -0.26
PTPN20-222	ENST00000509774	POTEB	Q6S5H4	581 aa		13.43	□□□□□ -0.26
PTPN20-222	ENST00000509774	GPC2	Q8N158	579 aa		13.43	□□□□□ -0.26
PTPN20-222	ENST00000509774	HHIPL1	Q96JK4	782 aa		13.43	□□□□□ -0.26
PTPN20-222	ENST00000509774	MS4A4A	Q96JQ5	239 aa		13.43	□□□□□ -0.26
PTPN20-222	ENST00000509774	BABAM1	Q9NWV8	329 aa		13.43	□□□□□ -0.26
PTPN20-222	ENST00000509774	ZBTB1	Q9Y2K1	713 aa		13.43	□□□□□ -0.26
PTPN20-222	ENST00000509774	APAF1	O14727	1248 aa		13.42	□□□□□ -0.26
PTPN20-222	ENST00000509774	SRGN	P10124	158 aa		13.42	□□□□□ -0.26
PTPN20-222	ENST00000509774	FKBP4	Q02790	459 aa	Known RBP eCLIP	13.42	□□□□□ -0.26
PTPN20-222	ENST00000509774	TAF7	Q15545	349 aa	Predicted RBP	13.42	□□□□□ -0.26
PTPN20-222	ENST00000509774	CCDC27	Q2M243	656 aa		13.42	□□□□□ -0.26
PTPN20-222	ENST00000509774	TBC1D9B	Q66K14	1250 aa		13.42	□□□□□ -0.26
PTPN20-222	ENST00000509774	CCDC146	Q8IYE0	955 aa		13.42	□□□□□ -0.26
PTPN20-222	ENST00000509774	COL4A5	P29400	1685 aa		13.42	□□□□□ -0.26
PTPN20-222	ENST00000509774	CUL9	Q8IWT3	2517 aa		13.42	□□□□□ -0.26
PTPN20-222	ENST00000509774	CALD1	Q05682	793 aa	Known RBP	13.41	□□□□□ -0.26
PTPN20-222	ENST00000509774	MMRN1	Q13201	1228 aa		13.41	□□□□□ -0.26
PTPN20-222	ENST00000509774	CCDC93	Q567U6	631 aa		13.41	□□□□□ -0.26
PTPN20-222	ENST00000509774	FAM9B	Q8IZU0	186 aa		13.41	□□□□□ -0.26
PTPN20-222	ENST00000509774	TAOK2	Q9UL54	1235 aa		13.41	□□□□□ -0.26
PTPN20-222	ENST00000509774	MKI67	P46013	3256 aa	Known RBP	13.41	□□□□□ -0.26
PTPN20-222	ENST00000509774	DLL1	O00548	723 aa		13.4	□□□□□ -0.26
PTPN20-222	ENST00000509774	EPS15	P42566	896 aa		13.4	□□□□□ -0.26
PTPN20-222	ENST00000509774	SCNN1D	P51172	638 aa		13.4	□□□□□ -0.26
PTPN20-222	ENST00000509774	OLFM4	Q6UX06	510 aa		13.4	□□□□□ -0.26
PTPN20-222	ENST00000509774	MCM10	Q7L590	875 aa		13.4	□□□□□ -0.26
PTPN20-222	ENST00000509774	VSIG10	Q8N0Z9	540 aa		13.4	□□□□□ -0.26
PTPN20-222	ENST00000509774	BTBD11	A6QL63	1104 aa		13.39	□□□□□ -0.27
PTPN20-222	ENST00000509774	CELF2	O95319	508 aa	Known RBP	13.39	□□□□□ -0.27
PTPN20-222	ENST00000509774	ZNF790	Q6PG37	636 aa		13.39	□□□□□ -0.27
PTPN20-222	ENST00000509774	MASTL	Q96GX5	879 aa		13.39	□□□□□ -0.27
PTPN20-222	ENST00000509774	HPS5	Q9UPZ3	1129 aa		13.39	□□□□□ -0.27
PTPN20-222	ENST00000509774	MRC1	P22897	1456 aa		13.39	□□□□□ -0.27
PTPN20-222	ENST00000509774	HOXB1	P14653	301 aa	Predicted RBP	13.38	□□□□□ -0.27
PTPN20-222	ENST00000509774	LMOD1	P29536	600 aa	Predicted RBP	13.38	□□□□□ -0.27
PTPN20-222	ENST00000509774	IARS	P41252	1262 aa	Known RBP	13.38	□□□□□ -0.27
PTPN20-222	ENST00000509774	NOG	Q13253	232 aa		13.38	□□□□□ -0.27
PTPN20-222	ENST00000509774	DCTN1	Q14203	1278 aa		13.38	□□□□□ -0.27
PTPN20-222	ENST00000509774	NEUROD2	Q15784	382 aa		13.38	□□□□□ -0.27
PTPN20-222	ENST00000509774	TMEM92	Q6UXU6	159 aa		13.38	□□□□□ -0.27
PTPN20-222	ENST00000509774	TTC5	Q8N0Z6	440 aa		13.38	□□□□□ -0.27
PTPN20-222	ENST00000509774	TEX13A	Q9BXU3	409 aa	Predicted RBP	13.38	□□□□□ -0.27
PTPN20-222	ENST00000509774	STK24	Q9Y6E0	443 aa		13.38	□□□□□ -0.27
PTPN20-222	ENST00000509774	GJA3	Q9Y6H8	435 aa		13.38	□□□□□ -0.27
PTPN20-222	ENST00000509774	UBR2	Q8IWV8	1755 aa		13.37	□□□□□ -0.27
PTPN20-222	ENST00000509774	TRIOBP	Q9H2D6	2365 aa		13.37	□□□□□ -0.27
PTPN20-222	ENST00000509774	RIMBP2	O15034	1052 aa		13.37	□□□□□ -0.27
PTPN20-222	ENST00000509774	USP50	Q70EL3	339 aa	Predicted RBP	13.37	□□□□□ -0.27
PTPN20-222	ENST00000509774	CTU1	Q7Z7A3	348 aa	Known RBP	13.37	□□□□□ -0.27
PTPN20-222	ENST00000509774	SAGE1	Q9NXZ1	904 aa		13.37	□□□□□ -0.27
PTPN20-222	ENST00000509774	SZT2	Q5T011	3432 aa		13.37	□□□□□ -0.27
PTPN20-222	ENST00000509774	POLR2A	P24928	1970 aa	Known RBP	13.36	□□□□□ -0.27
PTPN20-222	ENST00000509774	CNBD1	Q8NA66	436 aa		13.36	□□□□□ -0.27
PTPN20-222	ENST00000509774	KRTAP3-3	Q9BYR6	98 aa		13.36	□□□□□ -0.27
PTPN20-222	ENST00000509774	KRTAP3-2	Q9BYR7	98 aa		13.36	□□□□□ -0.27
PTPN20-222	ENST00000509774	RRP7A	Q9Y3A4	280 aa	Known RBP	13.36	□□□□□ -0.27
PTPN20-222	ENST00000509774	SNED1	Q8TER0	1413 aa		13.36	□□□□□ -0.27
PTPN20-222	ENST00000509774	CHL1	O00533	1208 aa		13.35	□□□□□ -0.27
PTPN20-222	ENST00000509774	ECM2	O94769	699 aa	Predicted RBP	13.35	□□□□□ -0.27
PTPN20-222	ENST00000509774	CANX	P27824	592 aa	Known RBP	13.35	□□□□□ -0.27
PTPN20-222	ENST00000509774	EIF5	P55010	431 aa	Known RBP	13.35	□□□□□ -0.27
PTPN20-222	ENST00000509774	WDR63	Q8IWG1	891 aa		13.35	□□□□□ -0.27
PTPN20-222	ENST00000509774	SYNE4	Q8N205	404 aa		13.35	□□□□□ -0.27
PTPN20-222	ENST00000509774	FMNL2	Q96PY5	1086 aa		13.35	□□□□□ -0.27
PTPN20-222	ENST00000509774	GLIS2	Q9BZE0	524 aa	Predicted RBP	13.35	□□□□□ -0.27
PTPN20-222	ENST00000509774	SLC39A6	Q13433	755 aa		13.34	□□□□□ -0.27
PTPN20-222	ENST00000509774	WWC1	Q8IX03	1113 aa		13.34	□□□□□ -0.27
PTPN20-222	ENST00000509774	RTKN2	Q8IZC4	609 aa		13.34	□□□□□ -0.27
PTPN20-222	ENST00000509774	RNF186	Q9NXI6	227 aa		13.34	□□□□□ -0.27
PTPN20-222	ENST00000509774	IL16	Q14005	1332 aa		13.34	□□□□□ -0.27

Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms