RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 GPLD1P80108 840 aa6.65□□□□□ -1.35
NUP54-208ENST00000508604 DCAF11Q8TEB1 546 aa6.65□□□□□ -1.35
NUP54-208ENST00000508604 USP17L15C9J2P7 530 aa6.64□□□□□ -1.35
NUP54-208ENST00000508604 USP17L10C9JJH3 530 aa6.64□□□□□ -1.35
NUP54-208ENST00000508604 USP17L13C9JLJ4 530 aa6.64□□□□□ -1.35
NUP54-208ENST00000508604 USP17L12C9JPN9 530 aa6.64□□□□□ -1.35
NUP54-208ENST00000508604 USP17L11C9JVI0 530 aa6.64□□□□□ -1.35
NUP54-208ENST00000508604 USP17L21D6R901 530 aa6.64□□□□□ -1.35
NUP54-208ENST00000508604 USP17L18D6R9N7 530 aa6.64□□□□□ -1.35
NUP54-208ENST00000508604 USP17L22D6RA61 530 aa6.64□□□□□ -1.35
NUP54-208ENST00000508604 USP17L17D6RBQ6 530 aa6.64□□□□□ -1.35
NUP54-208ENST00000508604 USP17L19D6RCP7 530 aa6.64□□□□□ -1.35
NUP54-208ENST00000508604 USP17L20D6RJB6 530 aa6.64□□□□□ -1.35
NUP54-208ENST00000508604 FOXO3O43524 673 aa6.64□□□□□ -1.35
NUP54-208ENST00000508604 HYAL3O43820 417 aaPredicted RBP6.64□□□□□ -1.35
NUP54-208ENST00000508604 LGR5O75473 907 aa6.64□□□□□ -1.35
NUP54-208ENST00000508604 MICAL2O94851 1124 aa6.64□□□□□ -1.35
NUP54-208ENST00000508604 EIF2AK2P19525 551 aaKnown RBP6.64□□□□□ -1.35
NUP54-208ENST00000508604 TARSP26639 723 aaKnown RBP6.64□□□□□ -1.35
NUP54-208ENST00000508604 IREB2P48200 963 aaKnown RBP6.64□□□□□ -1.35
NUP54-208ENST00000508604 MLLT1Q03111 559 aaPredicted RBP6.64□□□□□ -1.35
NUP54-208ENST00000508604 USP17L24Q0WX57 530 aa6.64□□□□□ -1.35
NUP54-208ENST00000508604 C11orf91Q3C1V1 193 aa6.64□□□□□ -1.35
NUP54-208ENST00000508604 CRTC2Q53ET0 693 aaPredicted RBP6.64□□□□□ -1.35
NUP54-208ENST00000508604 SSBP4Q9BWG4 385 aaPredicted RBP6.64□□□□□ -1.35
NUP54-208ENST00000508604 PPP1R12CQ9BZL4 782 aa6.64□□□□□ -1.35
NUP54-208ENST00000508604 RBSNQ9H1K0 784 aa6.64□□□□□ -1.35
NUP54-208ENST00000508604 SASH3O75995 380 aa6.63□□□□□ -1.35
NUP54-208ENST00000508604 ILDR2Q71H61 639 aa6.63□□□□□ -1.35
NUP54-208ENST00000508604 IFT43Q96FT9 208 aa6.63□□□□□ -1.35
NUP54-208ENST00000508604 SMG9Q9H0W8 520 aaKnown RBP6.63□□□□□ -1.35
NUP54-208ENST00000508604 NRLP54845 237 aa6.62□□□□□ -1.35
NUP54-208ENST00000508604 GRIK5Q16478 980 aa6.62□□□□□ -1.35
NUP54-208ENST00000508604 CLUAP1Q96AJ1 413 aa6.62□□□□□ -1.35
NUP54-208ENST00000508604 ZFATQ9P243 1243 aa6.62□□□□□ -1.35
NUP54-208ENST00000508604 ZBTB42B2RXF5 422 aa6.61□□□□□ -1.35
NUP54-208ENST00000508604 GHRHP01286 108 aa6.61□□□□□ -1.35
NUP54-208ENST00000508604 PSAPP07602 524 aa6.61□□□□□ -1.35
NUP54-208ENST00000508604 NOS3P29474 1203 aa6.61□□□□□ -1.35
NUP54-208ENST00000508604 LMOD1P29536 600 aaPredicted RBP6.61□□□□□ -1.35
NUP54-208ENST00000508604 KANK4Q5T7N3 995 aaPredicted RBP6.61□□□□□ -1.35
NUP54-208ENST00000508604 RNF112Q9ULX5 631 aa6.61□□□□□ -1.35
NUP54-208ENST00000508604 HFE2Q6ZVN8 426 aa6.61□□□□□ -1.35
NUP54-208ENST00000508604 SLC51AQ86UW1 340 aa6.61□□□□□ -1.35
NUP54-208ENST00000508604 MYO19Q96H55 970 aa6.61□□□□□ -1.35
NUP54-208ENST00000508604 KRTAP9-2Q9BYQ4 174 aa6.61□□□□□ -1.35
NUP54-208ENST00000508604 MRPL18Q9H0U6 180 aaKnown RBP6.61□□□□□ -1.35
NUP54-208ENST00000508604 QTRT2Q9H974 415 aaKnown RBP6.61□□□□□ -1.35
NUP54-208ENST00000508604 TLR7Q9NYK1 1049 aaKnown RBP6.61□□□□□ -1.35
NUP54-208ENST00000508604 PRKCSHP14314 528 aaPredicted RBP6.6□□□□□ -1.35
NUP54-208ENST00000508604 GRNP28799 593 aaKnown RBP6.6□□□□□ -1.35
NUP54-208ENST00000508604 PLAURQ03405 335 aa6.6□□□□□ -1.35
NUP54-208ENST00000508604 CMTR1Q8N1G2 835 aaKnown RBP6.6□□□□□ -1.35
NUP54-208ENST00000508604 FNBP4Q8N3X1 1017 aaPredicted RBP6.6□□□□□ -1.35
NUP54-208ENST00000508604 AKTIPQ9H8T0 292 aa6.6□□□□□ -1.35
NUP54-208ENST00000508604 SRA1Q9HD15 236 aaKnown RBP6.6□□□□□ -1.35
NUP54-208ENST00000508604 RTCBQ9Y3I0 505 aaKnown RBP6.6□□□□□ -1.35
NUP54-208ENST00000508604 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.59□□□□□ -1.35
NUP54-208ENST00000508604 XYLBO75191 536 aa6.59□□□□□ -1.35
NUP54-208ENST00000508604 WEE1P30291 646 aa6.59□□□□□ -1.35
NUP54-208ENST00000508604 PRR23CQ6ZRP0 262 aa6.59□□□□□ -1.35
NUP54-208ENST00000508604 FAM200AQ8TCP9 573 aa6.59□□□□□ -1.35
NUP54-208ENST00000508604 PLD4Q96BZ4 506 aa6.59□□□□□ -1.35
NUP54-208ENST00000508604 LOC102724428A0A0B4J2F2 783 aa6.58□□□□□ -1.36
NUP54-208ENST00000508604 EGFRP00533 1210 aa6.58□□□□□ -1.36
NUP54-208ENST00000508604 SIK1P57059 783 aa6.58□□□□□ -1.36
NUP54-208ENST00000508604 GDF6Q6KF10 455 aaPredicted RBP6.58□□□□□ -1.36
NUP54-208ENST00000508604 MAP4K3Q8IVH8 894 aa6.58□□□□□ -1.36
NUP54-208ENST00000508604 DLL1O00548 723 aa6.58□□□□□ -1.36
NUP54-208ENST00000508604 PTCD1O75127 700 aaKnown RBP6.58□□□□□ -1.36
NUP54-208ENST00000508604 RGL4Q8IZJ4 473 aa6.58□□□□□ -1.36
NUP54-208ENST00000508604 CACTIN-AS1Q8N1I8 211 aa6.58□□□□□ -1.36
NUP54-208ENST00000508604 MEGF10Q96KG7 1140 aa6.58□□□□□ -1.36
NUP54-208ENST00000508604 PCMTD2Q9NV79 361 aa6.58□□□□□ -1.36
NUP54-208ENST00000508604 KRTAP9-6A0A140TA67 174 aa6.57□□□□□ -1.36
NUP54-208ENST00000508604 DEAF1O75398 565 aaPredicted RBP6.57□□□□□ -1.36
NUP54-208ENST00000508604 TREML1Q86YW5 311 aa6.57□□□□□ -1.36
NUP54-208ENST00000508604 IL22RA1Q8N6P7 574 aa6.57□□□□□ -1.36
NUP54-208ENST00000508604 MUC3BQ9H195 1237 aa6.57□□□□□ -1.36
NUP54-208ENST00000508604 J3QW42 95 aa6.56□□□□□ -1.36
NUP54-208ENST00000508604 RFX1P22670 979 aa6.56□□□□□ -1.36
NUP54-208ENST00000508604 TMEM130Q8N3G9 435 aa6.56□□□□□ -1.36
NUP54-208ENST00000508604 USP20Q9Y2K6 914 aa6.56□□□□□ -1.36
NUP54-208ENST00000508604 OPLAHO14841 1288 aa6.55□□□□□ -1.36
NUP54-208ENST00000508604 SOX18P35713 384 aa6.55□□□□□ -1.36
NUP54-208ENST00000508604 NSUN5Q96P11 429 aaKnown RBP6.55□□□□□ -1.36
NUP54-208ENST00000508604 ARXQ96QS3 562 aa6.55□□□□□ -1.36
NUP54-208ENST00000508604 FAM13BQ9NYF5 915 aa6.55□□□□□ -1.36
NUP54-208ENST00000508604 MMP20O60882 483 aa6.55□□□□□ -1.36
NUP54-208ENST00000508604 FSTP19883 344 aa6.55□□□□□ -1.36
NUP54-208ENST00000508604 DZIP1LQ8IYY4 767 aaKnown RBP6.55□□□□□ -1.36
NUP54-208ENST00000508604 A6NJR5 290 aa6.54□□□□□ -1.36
NUP54-208ENST00000508604 F8W735 103 aaPredicted RBP6.54□□□□□ -1.36
NUP54-208ENST00000508604 GSC2O15499 205 aa6.54□□□□□ -1.36
NUP54-208ENST00000508604 ALX3O95076 343 aa6.54□□□□□ -1.36
NUP54-208ENST00000508604 SPACA7Q96KW9 195 aa6.54□□□□□ -1.36
NUP54-208ENST00000508604 LRFN2Q9ULH4 789 aa6.54□□□□□ -1.36
NUP54-208ENST00000508604 GLB1P16278 677 aa6.53□□□□□ -1.36
NUP54-208ENST00000508604 BRD2P25440 801 aaKnown RBP6.53□□□□□ -1.36
NUP54-208ENST00000508604 NLRP13Q86W25 1043 aa6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms