RNA–Protein interactions for RNA: ENST00000498751.1

SYNE1-231, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 578 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-231ENST00000498751 ANTXR1Q9H6X2 564 aa9.39□□□□□ -0.91
SYNE1-231ENST00000498751 GPR108Q9NPR9 543 aa9.39□□□□□ -0.91
SYNE1-231ENST00000498751 SNRKQ9NRH2 765 aa9.39□□□□□ -0.91
SYNE1-231ENST00000498751 DOT1LQ8TEK3 1739 aa9.39□□□□□ -0.91
SYNE1-231ENST00000498751 RFX7Q2KHR2 1363 aa9.38□□□□□ -0.91
SYNE1-231ENST00000498751 CDHR2Q9BYE9 1310 aa9.38□□□□□ -0.91
SYNE1-231ENST00000498751 ERVV-1B6SEH8 477 aa9.38□□□□□ -0.91
SYNE1-231ENST00000498751 ERC2O15083 957 aa9.38□□□□□ -0.91
SYNE1-231ENST00000498751 CYP19A1P11511 503 aaPredicted RBP9.38□□□□□ -0.91
SYNE1-231ENST00000498751 HOXB1P14653 301 aaPredicted RBP9.38□□□□□ -0.91
SYNE1-231ENST00000498751 ANAPC15P60006 121 aa9.38□□□□□ -0.91
SYNE1-231ENST00000498751 VPS72Q15906 364 aa9.38□□□□□ -0.91
SYNE1-231ENST00000498751 HSP90AB3PQ58FF7 597 aa9.38□□□□□ -0.91
SYNE1-231ENST00000498751 MYD88Q99836 296 aa9.38□□□□□ -0.91
SYNE1-231ENST00000498751 BCL9LQ86UU0 1499 aa9.38□□□□□ -0.91
SYNE1-231ENST00000498751 AFDNP55196 1824 aaKnown RBP9.38□□□□□ -0.91
SYNE1-231ENST00000498751 THSD7AQ9UPZ6 1657 aa9.37□□□□□ -0.91
SYNE1-231ENST00000498751 SASH1O94885 1247 aa9.37□□□□□ -0.91
SYNE1-231ENST00000498751 CHMLP26374 656 aa9.37□□□□□ -0.91
SYNE1-231ENST00000498751 DDIT3P35638 169 aa9.37□□□□□ -0.91
SYNE1-231ENST00000498751 IL6STP40189 918 aaPredicted RBP9.37□□□□□ -0.91
SYNE1-231ENST00000498751 PTPN12Q05209 780 aaKnown RBP9.37□□□□□ -0.91
SYNE1-231ENST00000498751 AIMP1Q12904 312 aaKnown RBP9.37□□□□□ -0.91
SYNE1-231ENST00000498751 TCIRG1Q13488 830 aa9.37□□□□□ -0.91
SYNE1-231ENST00000498751 GIGYF2Q6Y7W6 1299 aaKnown RBP9.37□□□□□ -0.91
SYNE1-231ENST00000498751 UNC5CLQ8IV45 518 aa9.37□□□□□ -0.91
SYNE1-231ENST00000498751 ZNF710Q8N1W2 664 aa9.37□□□□□ -0.91
SYNE1-231ENST00000498751 CWC25Q9NXE8 425 aaPredicted RBP9.37□□□□□ -0.91
SYNE1-231ENST00000498751 DAXXQ9UER7 740 aaPredicted RBP9.37□□□□□ -0.91
SYNE1-231ENST00000498751 MAP3K15Q6ZN16 1313 aa9.36□□□□□ -0.91
SYNE1-231ENST00000498751 A0A087WZG4 1122 aa9.36□□□□□ -0.91
SYNE1-231ENST00000498751 CIAO1O76071 339 aa9.36□□□□□ -0.91
SYNE1-231ENST00000498751 A1BGP04217 495 aa9.36□□□□□ -0.91
SYNE1-231ENST00000498751 PCCAP05165 728 aaPredicted RBP9.36□□□□□ -0.91
SYNE1-231ENST00000498751 FOXO4P98177 505 aa9.36□□□□□ -0.91
SYNE1-231ENST00000498751 RABEP1Q15276 862 aa9.36□□□□□ -0.91
SYNE1-231ENST00000498751 DDB1Q16531 1140 aa9.36□□□□□ -0.91
SYNE1-231ENST00000498751 EPHA10Q5JZY3 1008 aa9.36□□□□□ -0.91
SYNE1-231ENST00000498751 TTLL7Q6ZT98 887 aa9.36□□□□□ -0.91
SYNE1-231ENST00000498751 SLC4A9Q96Q91 983 aa9.36□□□□□ -0.91
SYNE1-231ENST00000498751 ESYT1Q9BSJ8 1104 aa9.36□□□□□ -0.91
SYNE1-231ENST00000498751 ECHDC1Q9NTX5 307 aa9.36□□□□□ -0.91
SYNE1-231ENST00000498751 ASAP1Q9ULH1 1129 aa9.36□□□□□ -0.91
SYNE1-231ENST00000498751 ANKRD36CQ5JPF3 1778 aa9.36□□□□□ -0.91
SYNE1-231ENST00000498751 CSF1RP07333 972 aa9.35□□□□□ -0.91
SYNE1-231ENST00000498751 G3BP1Q13283 466 aaKnown RBP eCLIP9.35□□□□□ -0.91
SYNE1-231ENST00000498751 DNAJC10Q8IXB1 793 aa9.35□□□□□ -0.91
SYNE1-231ENST00000498751 CNTROBQ8N137 903 aa9.35□□□□□ -0.91
SYNE1-231ENST00000498751 GPATCH3Q96I76 525 aa9.35□□□□□ -0.91
SYNE1-231ENST00000498751 AK7Q96M32 723 aa9.35□□□□□ -0.91
SYNE1-231ENST00000498751 PTCD1O75127 700 aaKnown RBP9.34□□□□□ -0.91
SYNE1-231ENST00000498751 EIF5P55010 431 aaKnown RBP9.34□□□□□ -0.91
SYNE1-231ENST00000498751 MARCH10Q8NA82 808 aaPredicted RBP9.34□□□□□ -0.91
SYNE1-231ENST00000498751 SMARCC1Q92922 1105 aaPredicted RBP9.34□□□□□ -0.91
SYNE1-231ENST00000498751 EVI5LQ96CN4 794 aa9.34□□□□□ -0.91
SYNE1-231ENST00000498751 IL1RAPL2Q9NP60 686 aa9.34□□□□□ -0.91
SYNE1-231ENST00000498751 LRP5O75197 1615 aa9.34□□□□□ -0.91
SYNE1-231ENST00000498751 COL5A3P25940 1745 aaPredicted RBP9.34□□□□□ -0.92
SYNE1-231ENST00000498751 RAD50Q92878 1312 aa9.33□□□□□ -0.92
SYNE1-231ENST00000498751 SPEF2Q9C093 1822 aa9.33□□□□□ -0.92
SYNE1-231ENST00000498751 HIP1O00291 1037 aa9.33□□□□□ -0.92
SYNE1-231ENST00000498751 SGSM2O43147 1006 aa9.33□□□□□ -0.92
SYNE1-231ENST00000498751 ONECUT3O60422 494 aaPredicted RBP9.33□□□□□ -0.92
SYNE1-231ENST00000498751 ATP5JP18859 108 aa9.33□□□□□ -0.92
SYNE1-231ENST00000498751 MCM2P49736 904 aa9.33□□□□□ -0.92
SYNE1-231ENST00000498751 UBE3BQ7Z3V4 1068 aa9.33□□□□□ -0.92
SYNE1-231ENST00000498751 HSCBQ8IWL3 235 aa9.33□□□□□ -0.92
SYNE1-231ENST00000498751 ZBTB38Q8NAP3 1195 aaPredicted RBP9.33□□□□□ -0.92
SYNE1-231ENST00000498751 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.33□□□□□ -0.92
SYNE1-231ENST00000498751 KCNB2Q92953 911 aa9.33□□□□□ -0.92
SYNE1-231ENST00000498751 EAF2Q96CJ1 260 aaPredicted RBP9.33□□□□□ -0.92
SYNE1-231ENST00000498751 KRTAP3-3Q9BYR6 98 aa9.33□□□□□ -0.92
SYNE1-231ENST00000498751 KRTAP3-2Q9BYR7 98 aa9.33□□□□□ -0.92
SYNE1-231ENST00000498751 K7ELQ4 463 aaPredicted RBP9.32□□□□□ -0.92
SYNE1-231ENST00000498751 PPP1R37O75864 691 aa9.32□□□□□ -0.92
SYNE1-231ENST00000498751 IFIT2P09913 472 aaKnown RBP9.32□□□□□ -0.92
SYNE1-231ENST00000498751 HSPA4P34932 840 aa9.32□□□□□ -0.92
SYNE1-231ENST00000498751 IL15P40933 162 aaPredicted RBP9.32□□□□□ -0.92
SYNE1-231ENST00000498751 PRIM1P49642 420 aaKnown RBP9.32□□□□□ -0.92
SYNE1-231ENST00000498751 TNNI3KQ59H18 835 aa9.32□□□□□ -0.92
SYNE1-231ENST00000498751 KIF6Q6ZMV9 814 aa9.32□□□□□ -0.92
SYNE1-231ENST00000498751 RUFY2Q8WXA3 655 aa9.32□□□□□ -0.92
SYNE1-231ENST00000498751 PA2G4Q9UQ80 394 aaKnown RBP9.32□□□□□ -0.92
SYNE1-231ENST00000498751 FPGT-TNNI3KV9GXZ4 949 aa9.32□□□□□ -0.92
SYNE1-231ENST00000498751 RTL9Q8NET4 1388 aa9.32□□□□□ -0.92
SYNE1-231ENST00000498751 ABCC12Q96J65 1359 aa9.32□□□□□ -0.92
SYNE1-231ENST00000498751 UBAP1LF5GYI3 381 aa9.31□□□□□ -0.92
SYNE1-231ENST00000498751 APBB1O00213 710 aa9.31□□□□□ -0.92
SYNE1-231ENST00000498751 RIMBP2O15034 1052 aa9.31□□□□□ -0.92
SYNE1-231ENST00000498751 LMBR1LQ6UX01 489 aa9.31□□□□□ -0.92
SYNE1-231ENST00000498751 CLEC17AQ6ZS10 378 aa9.31□□□□□ -0.92
SYNE1-231ENST00000498751 ATG9AQ7Z3C6 839 aa9.31□□□□□ -0.92
SYNE1-231ENST00000498751 NLRP10Q86W26 655 aa9.31□□□□□ -0.92
SYNE1-231ENST00000498751 NUTM1Q86Y26 1132 aa9.31□□□□□ -0.92
SYNE1-231ENST00000498751 SPNS2Q8IVW8 549 aa9.31□□□□□ -0.92
SYNE1-231ENST00000498751 ZNF34Q8IZ26 560 aa9.31□□□□□ -0.92
SYNE1-231ENST00000498751 CHMP5Q9NZZ3 219 aa9.31□□□□□ -0.92
SYNE1-231ENST00000498751 NHSQ6T4R5 1651 aa9.31□□□□□ -0.92
SYNE1-231ENST00000498751 BCORQ6W2J9 1755 aa9.3□□□□□ -0.92
SYNE1-231ENST00000498751 PALLDQ8WX93 1383 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms