RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 SCN11AQ9UI33 1791 aa10.08□□□□□ -0.8
USP54-215ENST00000497106 SIRT2Q8IXJ6 389 aa10.08□□□□□ -0.8
USP54-215ENST00000497106 STK32BQ9NY57 414 aa10.08□□□□□ -0.8
USP54-215ENST00000497106 PHF14O94880 888 aa10.08□□□□□ -0.8
USP54-215ENST00000497106 SDSP20132 328 aa10.08□□□□□ -0.8
USP54-215ENST00000497106 EIF5P55010 431 aaKnown RBP10.08□□□□□ -0.8
USP54-215ENST00000497106 FAM89AQ96GI7 184 aa10.08□□□□□ -0.8
USP54-215ENST00000497106 CCDC8Q9H0W5 538 aaPredicted RBP10.08□□□□□ -0.8
USP54-215ENST00000497106 PA2G4Q9UQ80 394 aaKnown RBP10.08□□□□□ -0.8
USP54-215ENST00000497106 TNNI3KQ59H18 835 aa10.08□□□□□ -0.8
USP54-215ENST00000497106 FPGT-TNNI3KV9GXZ4 949 aa10.08□□□□□ -0.8
USP54-215ENST00000497106 ITGA6P23229 1130 aa10.07□□□□□ -0.8
USP54-215ENST00000497106 KRT32Q14532 448 aa10.07□□□□□ -0.8
USP54-215ENST00000497106 AMOTL1Q8IY63 956 aa10.07□□□□□ -0.8
USP54-215ENST00000497106 NARFQ9UHQ1 456 aa10.07□□□□□ -0.8
USP54-215ENST00000497106 APBA3O96018 575 aa10.07□□□□□ -0.8
USP54-215ENST00000497106 BAG6P46379 1132 aa10.07□□□□□ -0.8
USP54-215ENST00000497106 RABL6Q3YEC7 729 aaPredicted RBP10.07□□□□□ -0.8
USP54-215ENST00000497106 TFCP2L1Q9NZI6 479 aa10.07□□□□□ -0.8
USP54-215ENST00000497106 CTNNA3Q9UI47 895 aa10.07□□□□□ -0.8
USP54-215ENST00000497106 KIF3AQ9Y496 699 aa10.07□□□□□ -0.8
USP54-215ENST00000497106 WASHC4Q2M389 1173 aa10.07□□□□□ -0.8
USP54-215ENST00000497106 CNBD1Q8NA66 436 aa10.07□□□□□ -0.8
USP54-215ENST00000497106 PLCH1Q4KWH8 1693 aa10.07□□□□□ -0.8
USP54-215ENST00000497106 KAT6BQ8WYB5 2073 aa10.07□□□□□ -0.8
USP54-215ENST00000497106 TFCP2Q12800 502 aa10.07□□□□□ -0.8
USP54-215ENST00000497106 JARID2Q92833 1246 aaPredicted RBP10.06□□□□□ -0.8
USP54-215ENST00000497106 TBC1D32Q96NH3 1257 aa10.06□□□□□ -0.8
USP54-215ENST00000497106 ATRNO75882 1429 aa10.06□□□□□ -0.8
USP54-215ENST00000497106 SSFA2P28290 1259 aa10.06□□□□□ -0.8
USP54-215ENST00000497106 BOLA2Q9H3K6 86 aa10.06□□□□□ -0.8
USP54-215ENST00000497106 ANAPC15P60006 121 aa10.06□□□□□ -0.8
USP54-215ENST00000497106 PUM3Q15397 648 aaKnown RBP10.06□□□□□ -0.8
USP54-215ENST00000497106 CCDC85AQ96PX6 553 aaPredicted RBP10.06□□□□□ -0.8
USP54-215ENST00000497106 PARP3Q9Y6F1 533 aa10.06□□□□□ -0.8
USP54-215ENST00000497106 FBXO41Q8TF61 875 aa10.05□□□□□ -0.8
USP54-215ENST00000497106 RBM17Q96I25 401 aaKnown RBP10.05□□□□□ -0.8
USP54-215ENST00000497106 BCL9LQ86UU0 1499 aa10.05□□□□□ -0.8
USP54-215ENST00000497106 MAP3K12Q12852 859 aa10.05□□□□□ -0.8
USP54-215ENST00000497106 NLGN1Q8N2Q7 840 aa10.05□□□□□ -0.8
USP54-215ENST00000497106 ATP5JP18859 108 aa10.05□□□□□ -0.8
USP54-215ENST00000497106 TRDNQ13061 729 aa10.05□□□□□ -0.8
USP54-215ENST00000497106 TMC4Q7Z404 712 aa10.05□□□□□ -0.8
USP54-215ENST00000497106 ZNF34Q8IZ26 560 aa10.05□□□□□ -0.8
USP54-215ENST00000497106 U3KPZ7 1027 aaPredicted RBP10.05□□□□□ -0.8
USP54-215ENST00000497106 TRIM37O94972 964 aa10.04□□□□□ -0.8
USP54-215ENST00000497106 ANKRD1Q15327 319 aa10.04□□□□□ -0.8
USP54-215ENST00000497106 ESYT1Q9BSJ8 1104 aa10.04□□□□□ -0.8
USP54-215ENST00000497106 NACAP1Q9BZK3 213 aa10.04□□□□□ -0.8
USP54-215ENST00000497106 HMG20BQ9P0W2 317 aa10.04□□□□□ -0.8
USP54-215ENST00000497106 KCNQ2O43526 872 aa10.04□□□□□ -0.8
USP54-215ENST00000497106 NCLP19338 710 aaKnown RBP10.04□□□□□ -0.8
USP54-215ENST00000497106 FKBP4Q02790 459 aaKnown RBP eCLIP10.04□□□□□ -0.8
USP54-215ENST00000497106 C16orf71Q8IYS4 520 aaPredicted RBP10.04□□□□□ -0.8
USP54-215ENST00000497106 LPIN2Q92539 896 aa10.04□□□□□ -0.8
USP54-215ENST00000497106 ADAMTS7Q9UKP4 1686 aa10.04□□□□□ -0.8
USP54-215ENST00000497106 ZGPATQ8N5A5 531 aaKnown RBP10.04□□□□□ -0.8
USP54-215ENST00000497106 GBP4Q96PP9 640 aa10.04□□□□□ -0.8
USP54-215ENST00000497106 KCPQ6ZWJ8 1503 aa10.03□□□□□ -0.8
USP54-215ENST00000497106 USPL1Q5W0Q7 1092 aa10.03□□□□□ -0.8
USP54-215ENST00000497106 SPTY2D1Q68D10 685 aaPredicted RBP10.03□□□□□ -0.8
USP54-215ENST00000497106 SKAP1Q86WV1 359 aa10.03□□□□□ -0.8
USP54-215ENST00000497106 CWC27Q6UX04 472 aaKnown RBP10.03□□□□□ -0.8
USP54-215ENST00000497106 PPIL4Q8WUA2 492 aaKnown RBP eCLIP10.03□□□□□ -0.8
USP54-215ENST00000497106 CAMTA2O94983 1202 aa10.03□□□□□ -0.8
USP54-215ENST00000497106 A0A1B0GUL7 405 aa10.03□□□□□ -0.8
USP54-215ENST00000497106 MAP4K4O95819 1239 aaPredicted RBP10.03□□□□□ -0.8
USP54-215ENST00000497106 PTPN12Q05209 780 aaKnown RBP10.03□□□□□ -0.8
USP54-215ENST00000497106 RFX7Q2KHR2 1363 aa10.03□□□□□ -0.8
USP54-215ENST00000497106 CARMIL3Q8ND23 1372 aa10.03□□□□□ -0.8
USP54-215ENST00000497106 PDIA4P13667 645 aaKnown RBP10.02□□□□□ -0.8
USP54-215ENST00000497106 ITPK1Q13572 414 aa10.02□□□□□ -0.8
USP54-215ENST00000497106 INTS5Q6P9B9 1019 aaKnown RBP10.02□□□□□ -0.8
USP54-215ENST00000497106 PAG1Q9NWQ8 432 aa10.02□□□□□ -0.8
USP54-215ENST00000497106 USP42Q9H9J4 1324 aaKnown RBP10.02□□□□□ -0.8
USP54-215ENST00000497106 CHMLP26374 656 aa10.02□□□□□ -0.81
USP54-215ENST00000497106 SLF2Q8IX21 1173 aa10.02□□□□□ -0.81
USP54-215ENST00000497106 ABCC12Q96J65 1359 aa10.02□□□□□ -0.81
USP54-215ENST00000497106 HCLS1P14317 486 aaPredicted RBP10.02□□□□□ -0.81
USP54-215ENST00000497106 LINC00116Q8NCU8 138 aa10.02□□□□□ -0.81
USP54-215ENST00000497106 ANKIB1Q9P2G1 1089 aa10.02□□□□□ -0.81
USP54-215ENST00000497106 LAMB4A4D0S4 1761 aa10.02□□□□□ -0.81
USP54-215ENST00000497106 ONECUT3O60422 494 aaPredicted RBP10.02□□□□□ -0.81
USP54-215ENST00000497106 SLC3A2P08195 630 aaKnown RBP10.02□□□□□ -0.81
USP54-215ENST00000497106 HMGB1P09429 215 aaKnown RBP10.02□□□□□ -0.81
USP54-215ENST00000497106 HLFQ16534 295 aa10.02□□□□□ -0.81
USP54-215ENST00000497106 RALYLQ86SE5 291 aaKnown RBP10.02□□□□□ -0.81
USP54-215ENST00000497106 HELLSQ9NRZ9 838 aa10.02□□□□□ -0.81
USP54-215ENST00000497106 CYP46A1Q9Y6A2 500 aa10.02□□□□□ -0.81
USP54-215ENST00000497106 APPP05067 770 aa10.01□□□□□ -0.81
USP54-215ENST00000497106 FOXO4P98177 505 aa10.01□□□□□ -0.81
USP54-215ENST00000497106 ZSCAN31Q96LW9 406 aaPredicted RBP10.01□□□□□ -0.81
USP54-215ENST00000497106 CHMP5Q9NZZ3 219 aa10.01□□□□□ -0.81
USP54-215ENST00000497106 RBM25P49756 843 aaKnown RBP10.01□□□□□ -0.81
USP54-215ENST00000497106 TTLL11Q8NHH1 800 aa10.01□□□□□ -0.81
USP54-215ENST00000497106 LRP2BPQ9P2M1 347 aa10.01□□□□□ -0.81
USP54-215ENST00000497106 GOLIM4O00461 696 aa10.01□□□□□ -0.81
USP54-215ENST00000497106 SUSD4Q5VX71 490 aa10.01□□□□□ -0.81
USP54-215ENST00000497106 TMED8Q6PL24 325 aaPredicted RBP10.01□□□□□ -0.81
USP54-215ENST00000497106 ZNF804AQ7Z570 1209 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms