RNA–Protein interactions for RNA: ENST00000497026.5

CSMD3-208, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 1,406 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-208ENST00000497026 RHPN1Q8TCX5 695 aa7.64□□□□□ -1.19
CSMD3-208ENST00000497026 EDARADDQ8WWZ3 215 aa7.64□□□□□ -1.19
CSMD3-208ENST00000497026 SCG3Q8WXD2 468 aaKnown RBP7.64□□□□□ -1.19
CSMD3-208ENST00000497026 HINFPQ9BQA5 517 aa7.64□□□□□ -1.19
CSMD3-208ENST00000497026 NEUROD4Q9HD90 331 aa7.64□□□□□ -1.19
CSMD3-208ENST00000497026 ARHGEF12Q9NZN5 1544 aa7.64□□□□□ -1.19
CSMD3-208ENST00000497026 GPATCH8Q9UKJ3 1502 aaKnown RBP7.64□□□□□ -1.19
CSMD3-208ENST00000497026 MTUS2Q5JR59 1369 aa7.63□□□□□ -1.19
CSMD3-208ENST00000497026 C21orf2O43822 256 aa7.63□□□□□ -1.19
CSMD3-208ENST00000497026 RFX1P22670 979 aa7.63□□□□□ -1.19
CSMD3-208ENST00000497026 SEC13P55735 322 aa7.63□□□□□ -1.19
CSMD3-208ENST00000497026 PSMA6P60900 246 aaKnown RBP7.63□□□□□ -1.19
CSMD3-208ENST00000497026 SNRPNP63162 240 aaKnown RBP7.63□□□□□ -1.19
CSMD3-208ENST00000497026 HSH2DQ96JZ2 352 aa7.63□□□□□ -1.19
CSMD3-208ENST00000497026 PHACTR1Q9C0D0 580 aa7.63□□□□□ -1.19
CSMD3-208ENST00000497026 RRAGCQ9HB90 399 aa7.63□□□□□ -1.19
CSMD3-208ENST00000497026 SUPT6HQ7KZ85 1726 aaKnown RBP7.63□□□□□ -1.19
CSMD3-208ENST00000497026 M0R2N6 131 aa7.62□□□□□ -1.19
CSMD3-208ENST00000497026 AMPD1P23109 780 aa7.62□□□□□ -1.19
CSMD3-208ENST00000497026 PTK7Q13308 1070 aa7.62□□□□□ -1.19
CSMD3-208ENST00000497026 PODNQ7Z5L7 613 aa7.62□□□□□ -1.19
CSMD3-208ENST00000497026 C7orf43Q8WVR3 580 aa7.62□□□□□ -1.19
CSMD3-208ENST00000497026 NGLY1Q96IV0 654 aa7.62□□□□□ -1.19
CSMD3-208ENST00000497026 VRTNQ9H8Y1 702 aa7.62□□□□□ -1.19
CSMD3-208ENST00000497026 GDF2Q9UK05 429 aaPredicted RBP7.62□□□□□ -1.19
CSMD3-208ENST00000497026 ZFYVE16Q7Z3T8 1539 aa7.62□□□□□ -1.19
CSMD3-208ENST00000497026 YEATS2Q9ULM3 1422 aa7.62□□□□□ -1.19
CSMD3-208ENST00000497026 ATAD2Q6PL18 1390 aa7.62□□□□□ -1.19
CSMD3-208ENST00000497026 MAP3K1Q13233 1512 aa7.62□□□□□ -1.19
CSMD3-208ENST00000497026 SYCP2Q9BX26 1530 aa7.62□□□□□ -1.19
CSMD3-208ENST00000497026 USP17L15C9J2P7 530 aa7.61□□□□□ -1.19
CSMD3-208ENST00000497026 USP17L10C9JJH3 530 aa7.61□□□□□ -1.19
CSMD3-208ENST00000497026 USP17L13C9JLJ4 530 aa7.61□□□□□ -1.19
CSMD3-208ENST00000497026 USP17L12C9JPN9 530 aa7.61□□□□□ -1.19
CSMD3-208ENST00000497026 USP17L11C9JVI0 530 aa7.61□□□□□ -1.19
CSMD3-208ENST00000497026 USP17L21D6R901 530 aa7.61□□□□□ -1.19
CSMD3-208ENST00000497026 USP17L18D6R9N7 530 aa7.61□□□□□ -1.19
CSMD3-208ENST00000497026 USP17L22D6RA61 530 aa7.61□□□□□ -1.19
CSMD3-208ENST00000497026 USP17L17D6RBQ6 530 aa7.61□□□□□ -1.19
CSMD3-208ENST00000497026 USP17L19D6RCP7 530 aa7.61□□□□□ -1.19
CSMD3-208ENST00000497026 USP17L20D6RJB6 530 aa7.61□□□□□ -1.19
CSMD3-208ENST00000497026 PROCP04070 461 aa7.61□□□□□ -1.19
CSMD3-208ENST00000497026 PCBP4P57723 403 aaKnown RBP7.61□□□□□ -1.19
CSMD3-208ENST00000497026 USP17L24Q0WX57 530 aa7.61□□□□□ -1.19
CSMD3-208ENST00000497026 CFAP70Q5T0N1 1121 aa7.61□□□□□ -1.19
CSMD3-208ENST00000497026 EFCAB2Q5VUJ9 269 aa7.61□□□□□ -1.19
CSMD3-208ENST00000497026 GOLGA6L1Q8N7Z2 621 aa7.61□□□□□ -1.19
CSMD3-208ENST00000497026 ZNF280CQ8ND82 737 aa7.61□□□□□ -1.19
CSMD3-208ENST00000497026 KLF15Q9UIH9 416 aa7.61□□□□□ -1.19
CSMD3-208ENST00000497026 CHMP3Q9Y3E7 222 aa7.61□□□□□ -1.19
CSMD3-208ENST00000497026 HECW2Q9P2P5 1572 aa7.61□□□□□ -1.19
CSMD3-208ENST00000497026 BCORL1Q5H9F3 1711 aa7.61□□□□□ -1.19
CSMD3-208ENST00000497026 NCOA2Q15596 1464 aa7.61□□□□□ -1.19
CSMD3-208ENST00000497026 ZNF518AQ6AHZ1 1483 aa7.61□□□□□ -1.19
CSMD3-208ENST00000497026 LRRC9Q6ZRR7 1453 aa7.61□□□□□ -1.19
CSMD3-208ENST00000497026 MAGI2Q86UL8 1455 aa7.61□□□□□ -1.19
CSMD3-208ENST00000497026 ABCA6Q8N139 1617 aa7.61□□□□□ -1.19
CSMD3-208ENST00000497026 ADAMTSL3P82987 1691 aa7.61□□□□□ -1.19
CSMD3-208ENST00000497026 FAM157BP0CG42 384 aa7.61□□□□□ -1.19
CSMD3-208ENST00000497026 SFSWAPQ12872 951 aaKnown RBP7.61□□□□□ -1.19
CSMD3-208ENST00000497026 MARK1Q9P0L2 795 aa7.61□□□□□ -1.19
CSMD3-208ENST00000497026 PRR12Q9ULL5 1215 aa7.61□□□□□ -1.19
CSMD3-208ENST00000497026 TRAPPC8Q9Y2L5 1435 aa7.61□□□□□ -1.19
CSMD3-208ENST00000497026 DIP2CQ9Y2E4 1556 aa7.6□□□□□ -1.19
CSMD3-208ENST00000497026 KIDINS220Q9ULH0 1771 aa7.6□□□□□ -1.19
CSMD3-208ENST00000497026 ARAFP10398 606 aa7.6□□□□□ -1.19
CSMD3-208ENST00000497026 SLCO4C1Q6ZQN7 724 aa7.6□□□□□ -1.19
CSMD3-208ENST00000497026 KRTAP1-3Q8IUG1 177 aa7.6□□□□□ -1.19
CSMD3-208ENST00000497026 ANKMY2Q8IV38 441 aa7.6□□□□□ -1.19
CSMD3-208ENST00000497026 EFSO43281 561 aa7.59□□□□□ -1.19
CSMD3-208ENST00000497026 EPXP11678 715 aa7.59□□□□□ -1.19
CSMD3-208ENST00000497026 SAMD5Q5TGI4 173 aa7.59□□□□□ -1.19
CSMD3-208ENST00000497026 ALDH16A1Q8IZ83 802 aa7.59□□□□□ -1.19
CSMD3-208ENST00000497026 LRRC4BQ9NT99 713 aa7.59□□□□□ -1.19
CSMD3-208ENST00000497026 INO80Q9ULG1 1556 aaPredicted RBP7.58□□□□□ -1.2
CSMD3-208ENST00000497026 CCNB3Q8WWL7 1395 aa7.58□□□□□ -1.2
CSMD3-208ENST00000497026 MADDQ8WXG6 1647 aa7.58□□□□□ -1.2
CSMD3-208ENST00000497026 MLH3Q9UHC1 1453 aa7.58□□□□□ -1.2
CSMD3-208ENST00000497026 FCHSD1Q86WN1 690 aa7.58□□□□□ -1.2
CSMD3-208ENST00000497026 AFAP1Q8N556 730 aa7.58□□□□□ -1.2
CSMD3-208ENST00000497026 BTBD6Q96KE9 485 aa7.58□□□□□ -1.2
CSMD3-208ENST00000497026 CEP63Q96MT8 703 aa7.58□□□□□ -1.2
CSMD3-208ENST00000497026 REREQ9P2R6 1566 aa7.58□□□□□ -1.2
CSMD3-208ENST00000497026 MBD5Q9P267 1494 aa7.57□□□□□ -1.2
CSMD3-208ENST00000497026 FAM196BA6NMK8 535 aa7.57□□□□□ -1.2
CSMD3-208ENST00000497026 FAM182BQ5T319 152 aa7.57□□□□□ -1.2
CSMD3-208ENST00000497026 C1orf53Q5VUE5 145 aa7.57□□□□□ -1.2
CSMD3-208ENST00000497026 RAB44Q7Z6P3 723 aaPredicted RBP7.57□□□□□ -1.2
CSMD3-208ENST00000497026 SUSD3Q96L08 255 aa7.57□□□□□ -1.2
CSMD3-208ENST00000497026 SLC30A3Q99726 388 aa7.57□□□□□ -1.2
CSMD3-208ENST00000497026 C2orf49Q9BVC5 232 aaPredicted RBP7.57□□□□□ -1.2
CSMD3-208ENST00000497026 C9orf84Q5VXU9 1444 aa7.57□□□□□ -1.2
CSMD3-208ENST00000497026 KIAA1107Q9UPP5 1409 aa7.57□□□□□ -1.2
CSMD3-208ENST00000497026 ATP10AO60312 1499 aa7.56□□□□□ -1.2
CSMD3-208ENST00000497026 ITGB2P05107 769 aa7.56□□□□□ -1.2
CSMD3-208ENST00000497026 ADH6P28332 368 aa7.56□□□□□ -1.2
CSMD3-208ENST00000497026 HIRAP54198 1017 aaPredicted RBP7.56□□□□□ -1.2
CSMD3-208ENST00000497026 ARXQ96QS3 562 aa7.56□□□□□ -1.2
CSMD3-208ENST00000497026 CFDP1Q9UEE9 299 aaPredicted RBP7.56□□□□□ -1.2
CSMD3-208ENST00000497026 ZNF644Q9H582 1327 aaPredicted RBP7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms