RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 LDHDQ86WU2 507 aa16.41■□□□□ 0.22
PTPRF-214ENST00000496043 ZBTB38Q8NAP3 1195 aaPredicted RBP16.41■□□□□ 0.22
PTPRF-214ENST00000496043 CCDC191Q8NCU4 936 aa16.41■□□□□ 0.22
PTPRF-214ENST00000496043 STK31Q9BXU1 1019 aa16.41■□□□□ 0.22
PTPRF-214ENST00000496043 RTFDC1Q9BY42 306 aaPredicted RBP16.41■□□□□ 0.22
PTPRF-214ENST00000496043 GJA3Q9Y6H8 435 aa16.41■□□□□ 0.22
PTPRF-214ENST00000496043 EPHX2P34913 555 aa16.4■□□□□ 0.22
PTPRF-214ENST00000496043 AOC3Q16853 763 aa16.4■□□□□ 0.22
PTPRF-214ENST00000496043 EAPPQ56P03 285 aaPredicted RBP16.4■□□□□ 0.22
PTPRF-214ENST00000496043 SLC51AQ86UW1 340 aa16.4■□□□□ 0.22
PTPRF-214ENST00000496043 WDR63Q8IWG1 891 aa16.4■□□□□ 0.22
PTPRF-214ENST00000496043 METTL22Q9BUU2 404 aaPredicted RBP16.4■□□□□ 0.22
PTPRF-214ENST00000496043 CLEC11AQ9Y240 323 aa16.4■□□□□ 0.22
PTPRF-214ENST00000496043 SALL2Q9Y467 1007 aaPredicted RBP16.4■□□□□ 0.22
PTPRF-214ENST00000496043 TWISTNBQ3B726 338 aaPredicted RBP16.39■□□□□ 0.21
PTPRF-214ENST00000496043 KSR2Q6VAB6 950 aa16.39■□□□□ 0.21
PTPRF-214ENST00000496043 CEP350Q5VT06 3117 aa16.38■□□□□ 0.21
PTPRF-214ENST00000496043 PCCAP05165 728 aaPredicted RBP16.38■□□□□ 0.21
PTPRF-214ENST00000496043 LMOD1P29536 600 aaPredicted RBP16.38■□□□□ 0.21
PTPRF-214ENST00000496043 CWC25Q9NXE8 425 aaPredicted RBP16.38■□□□□ 0.21
PTPRF-214ENST00000496043 ZNRF3Q9ULT6 936 aa16.38■□□□□ 0.21
PTPRF-214ENST00000496043 MAP3K2Q9Y2U5 619 aa16.38■□□□□ 0.21
PTPRF-214ENST00000496043 SLC4A2P04920 1241 aa16.37■□□□□ 0.21
PTPRF-214ENST00000496043 RPS8P62241 208 aaKnown RBP16.37■□□□□ 0.21
PTPRF-214ENST00000496043 CELF1Q92879 486 aaKnown RBP16.37■□□□□ 0.21
PTPRF-214ENST00000496043 ANKRD36CQ5JPF3 1778 aa16.36■□□□□ 0.21
PTPRF-214ENST00000496043 PI4KAP2A4QPH2 592 aa16.36■□□□□ 0.21
PTPRF-214ENST00000496043 PDE8AO60658 829 aa16.36■□□□□ 0.21
PTPRF-214ENST00000496043 KIAA2012Q0VF49 1180 aa16.36■□□□□ 0.21
PTPRF-214ENST00000496043 NEXNQ0ZGT2 675 aa16.36■□□□□ 0.21
PTPRF-214ENST00000496043 FAM9BQ8IZU0 186 aa16.36■□□□□ 0.21
PTPRF-214ENST00000496043 PI4KAP1Q8N8J0 262 aa16.36■□□□□ 0.21
PTPRF-214ENST00000496043 JMYQ8N9B5 988 aa16.36■□□□□ 0.21
PTPRF-214ENST00000496043 NSFL1CQ9UNZ2 370 aaKnown RBP16.36■□□□□ 0.21
PTPRF-214ENST00000496043 CXCL9Q07325 125 aa16.35■□□□□ 0.21
PTPRF-214ENST00000496043 CREBZFQ9NS37 354 aa16.35■□□□□ 0.21
PTPRF-214ENST00000496043 SCN4AP35499 1836 aa16.34■□□□□ 0.21
PTPRF-214ENST00000496043 ITGBL1O95965 494 aaPredicted RBP16.34■□□□□ 0.21
PTPRF-214ENST00000496043 EPS15P42566 896 aa16.34■□□□□ 0.21
PTPRF-214ENST00000496043 TNIP1Q15025 636 aa16.34■□□□□ 0.21
PTPRF-214ENST00000496043 WASHC4Q2M389 1173 aa16.34■□□□□ 0.21
PTPRF-214ENST00000496043 CCDC152Q4G0S7 254 aa16.34■□□□□ 0.21
PTPRF-214ENST00000496043 CIAPIN1Q6FI81 312 aa16.34■□□□□ 0.21
PTPRF-214ENST00000496043 CNTROBQ8N137 903 aa16.34■□□□□ 0.21
PTPRF-214ENST00000496043 JARID2Q92833 1246 aaPredicted RBP16.34■□□□□ 0.21
PTPRF-214ENST00000496043 C6orf229H3BNL8 230 aa16.33■□□□□ 0.2
PTPRF-214ENST00000496043 VAMP4O75379 141 aa16.33■□□□□ 0.2
PTPRF-214ENST00000496043 SCNN1DP51172 638 aa16.33■□□□□ 0.2
PTPRF-214ENST00000496043 GPSM2P81274 684 aa16.33■□□□□ 0.2
PTPRF-214ENST00000496043 USP50Q70EL3 339 aaPredicted RBP16.33■□□□□ 0.2
PTPRF-214ENST00000496043 G2E3Q7L622 706 aa16.33■□□□□ 0.2
PTPRF-214ENST00000496043 SEC31BQ9NQW1 1179 aa16.33■□□□□ 0.2
PTPRF-214ENST00000496043 IGKV5-2P06315 115 aa16.32■□□□□ 0.2
PTPRF-214ENST00000496043 COL4A5P29400 1685 aa16.32■□□□□ 0.2
PTPRF-214ENST00000496043 MAP1SQ66K74 1059 aaPredicted RBP16.32■□□□□ 0.2
PTPRF-214ENST00000496043 PASKQ96RG2 1323 aa16.32■□□□□ 0.2
PTPRF-214ENST00000496043 EYA3Q99504 573 aa16.32■□□□□ 0.2
PTPRF-214ENST00000496043 FANCIQ9NVI1 1328 aa16.32■□□□□ 0.2
PTPRF-214ENST00000496043 CDHR2Q9BYE9 1310 aa16.31■□□□□ 0.2
PTPRF-214ENST00000496043 RIMBP2O15034 1052 aa16.31■□□□□ 0.2
PTPRF-214ENST00000496043 RAD17O75943 681 aa16.31■□□□□ 0.2
PTPRF-214ENST00000496043 EXOSC9Q06265 439 aaKnown RBP16.31■□□□□ 0.2
PTPRF-214ENST00000496043 BCL2L13Q9BXK5 485 aa16.31■□□□□ 0.2
PTPRF-214ENST00000496043 GPRC5DQ9NZD1 345 aa16.31■□□□□ 0.2
PTPRF-214ENST00000496043 POLLQ9UGP5 575 aa16.31■□□□□ 0.2
PTPRF-214ENST00000496043 TMEM88BA6NKF7 163 aa16.3■□□□□ 0.2
PTPRF-214ENST00000496043 GMPSP49915 693 aaPredicted RBP16.3■□□□□ 0.2
PTPRF-214ENST00000496043 FLIIQ13045 1269 aa16.3■□□□□ 0.2
PTPRF-214ENST00000496043 ANKRD18AQ8IVF6 992 aa16.3■□□□□ 0.2
PTPRF-214ENST00000496043 CCDC85AQ96PX6 553 aaPredicted RBP16.3■□□□□ 0.2
PTPRF-214ENST00000496043 ZC3H12CQ9C0D7 883 aaKnown RBP16.3■□□□□ 0.2
PTPRF-214ENST00000496043 MYH16Q9H6N6 1097 aa16.3■□□□□ 0.2
PTPRF-214ENST00000496043 ADARB2Q9NS39 739 aaKnown RBP16.3■□□□□ 0.2
PTPRF-214ENST00000496043 ANKIB1Q9P2G1 1089 aa16.3■□□□□ 0.2
PTPRF-214ENST00000496043 LAMB2P55268 1798 aa16.3■□□□□ 0.2
PTPRF-214ENST00000496043 NEURL1BA8MQ27 555 aa16.29■□□□□ 0.2
PTPRF-214ENST00000496043 H7C1W4 665 aa16.29■□□□□ 0.2
PTPRF-214ENST00000496043 FKBP5Q13451 457 aaPredicted RBP16.29■□□□□ 0.2
PTPRF-214ENST00000496043 CWF19L2Q2TBE0 894 aaKnown RBP16.29■□□□□ 0.2
PTPRF-214ENST00000496043 TBC1D16Q8TBP0 767 aa16.29■□□□□ 0.2
PTPRF-214ENST00000496043 PODXL2Q9NZ53 605 aa16.29■□□□□ 0.2
PTPRF-214ENST00000496043 YDJCA8MPS7 323 aa16.28■□□□□ 0.2
PTPRF-214ENST00000496043 G3V3G9 751 aa16.28■□□□□ 0.2
PTPRF-214ENST00000496043 DCAF8Q5TAQ9 597 aa16.28■□□□□ 0.2
PTPRF-214ENST00000496043 TTLL11Q8NHH1 800 aa16.28■□□□□ 0.2
PTPRF-214ENST00000496043 DNAAF4Q8WXU2 420 aa16.28■□□□□ 0.2
PTPRF-214ENST00000496043 CDC5LQ99459 802 aaKnown RBP16.28■□□□□ 0.2
PTPRF-214ENST00000496043 SPINK5Q9NQ38 1064 aaPredicted RBP16.28■□□□□ 0.2
PTPRF-214ENST00000496043 MKRN1Q9UHC7 482 aaKnown RBP16.28■□□□□ 0.2
PTPRF-214ENST00000496043 DDX60Q8IY21 1712 aaKnown RBP16.28■□□□□ 0.2
PTPRF-214ENST00000496043 H7C1D1 291 aa16.27■□□□□ 0.2
PTPRF-214ENST00000496043 CTSWP56202 376 aa16.27■□□□□ 0.2
PTPRF-214ENST00000496043 GCKRQ14397 625 aa16.27■□□□□ 0.2
PTPRF-214ENST00000496043 DOK7Q18PE1 504 aa16.27■□□□□ 0.2
PTPRF-214ENST00000496043 DBNDD1Q9H9R9 158 aa16.27■□□□□ 0.2
PTPRF-214ENST00000496043 CNOT7Q9UIV1 285 aaKnown RBP16.27■□□□□ 0.2
PTPRF-214ENST00000496043 GGA1Q9UJY5 639 aa16.27■□□□□ 0.2
PTPRF-214ENST00000496043 TAF1P21675 1872 aa16.27■□□□□ 0.19
PTPRF-214ENST00000496043 UBE3BQ7Z3V4 1068 aa16.26■□□□□ 0.19
PTPRF-214ENST00000496043 LINS1Q8NG48 757 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms