RNA–Protein interactions for RNA: ENST00000493618.5

ATG4B-223, Transcript of autophagy related 4B cysteine peptidase, human

TSL 5

Gene ATG4B, Length 899 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATG4B-223	ENST00000493618	JMY	Q8N9B5	988 aa		18.94	■□□□□ 0.62
ATG4B-223	ENST00000493618	MYD88	Q99836	296 aa		18.94	■□□□□ 0.62
ATG4B-223	ENST00000493618	MRS2	Q9HD23	443 aa		18.94	■□□□□ 0.62
ATG4B-223	ENST00000493618	DUOX1	Q9NRD9	1551 aa		18.93	■□□□□ 0.62
ATG4B-223	ENST00000493618	SPEF2	Q9C093	1822 aa		18.93	■□□□□ 0.62
ATG4B-223	ENST00000493618	MPND	Q8N594	471 aa		18.93	■□□□□ 0.62
ATG4B-223	ENST00000493618	IRS4	O14654	1257 aa	Predicted RBP	18.92	■□□□□ 0.62
ATG4B-223	ENST00000493618	JARID2	Q92833	1246 aa	Predicted RBP	18.92	■□□□□ 0.62
ATG4B-223	ENST00000493618	CELF1	Q92879	486 aa	Known RBP	18.92	■□□□□ 0.62
ATG4B-223	ENST00000493618	ANP32C	O43423	234 aa		18.91	■□□□□ 0.62
ATG4B-223	ENST00000493618	LMOD1	P29536	600 aa	Predicted RBP	18.91	■□□□□ 0.62
ATG4B-223	ENST00000493618	CCDC30	Q5VVM6	783 aa		18.91	■□□□□ 0.62
ATG4B-223	ENST00000493618	MAP1S	Q66K74	1059 aa	Predicted RBP	18.91	■□□□□ 0.62
ATG4B-223	ENST00000493618	WWC1	Q8IX03	1113 aa		18.91	■□□□□ 0.62
ATG4B-223	ENST00000493618	SUPT20H	Q8NEM7	779 aa		18.91	■□□□□ 0.62
ATG4B-223	ENST00000493618	RTFDC1	Q9BY42	306 aa	Predicted RBP	18.91	■□□□□ 0.62
ATG4B-223	ENST00000493618	MKRN1	Q9UHC7	482 aa	Known RBP	18.91	■□□□□ 0.62
ATG4B-223	ENST00000493618	SALL2	Q9Y467	1007 aa	Predicted RBP	18.91	■□□□□ 0.62
ATG4B-223	ENST00000493618	MYH3	P11055	1940 aa		18.91	■□□□□ 0.62
ATG4B-223	ENST00000493618	PASK	Q96RG2	1323 aa		18.91	■□□□□ 0.62
ATG4B-223	ENST00000493618	PCNT	O95613	3336 aa		18.9	■□□□□ 0.62
ATG4B-223	ENST00000493618	EPS15	P42566	896 aa		18.9	■□□□□ 0.62
ATG4B-223	ENST00000493618	SCNN1D	P51172	638 aa		18.9	■□□□□ 0.62
ATG4B-223	ENST00000493618	SF3B3	Q15393	1217 aa	Known RBP	18.9	■□□□□ 0.62
ATG4B-223	ENST00000493618	CREBZF	Q9NS37	354 aa		18.9	■□□□□ 0.62
ATG4B-223	ENST00000493618	ITGBL1	O95965	494 aa	Predicted RBP	18.89	■□□□□ 0.61
ATG4B-223	ENST00000493618	TRIM28	Q13263	835 aa	Known RBP	18.89	■□□□□ 0.61
ATG4B-223	ENST00000493618	PNMA8A	Q86V59	439 aa	Predicted RBP	18.89	■□□□□ 0.61
ATG4B-223	ENST00000493618	TRPM7	Q96QT4	1865 aa		18.88	■□□□□ 0.61
ATG4B-223	ENST00000493618	CXCL9	Q07325	125 aa		18.88	■□□□□ 0.61
ATG4B-223	ENST00000493618	CCDC27	Q2M243	656 aa		18.88	■□□□□ 0.61
ATG4B-223	ENST00000493618	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	18.88	■□□□□ 0.61
ATG4B-223	ENST00000493618	ZNRF3	Q9ULT6	936 aa		18.88	■□□□□ 0.61
ATG4B-223	ENST00000493618	MAP3K2	Q9Y2U5	619 aa		18.88	■□□□□ 0.61
ATG4B-223	ENST00000493618	KIAA2012	Q0VF49	1180 aa		18.87	■□□□□ 0.61
ATG4B-223	ENST00000493618	CNTROB	Q8N137	903 aa		18.87	■□□□□ 0.61
ATG4B-223	ENST00000493618	CCDC85A	Q96PX6	553 aa	Predicted RBP	18.87	■□□□□ 0.61
ATG4B-223	ENST00000493618	METTL22	Q9BUU2	404 aa	Predicted RBP	18.87	■□□□□ 0.61
ATG4B-223	ENST00000493618	VPS33B	Q9H267	617 aa		18.87	■□□□□ 0.61
ATG4B-223	ENST00000493618	CACNA1F	O60840	1977 aa		18.86	■□□□□ 0.61
ATG4B-223	ENST00000493618	RIMBP2	O15034	1052 aa		18.86	■□□□□ 0.61
ATG4B-223	ENST00000493618	RAD17	O75943	681 aa		18.86	■□□□□ 0.61
ATG4B-223	ENST00000493618	DDX58	O95786	925 aa	Known RBP	18.86	■□□□□ 0.61
ATG4B-223	ENST00000493618	GPSM2	P81274	684 aa		18.86	■□□□□ 0.61
ATG4B-223	ENST00000493618	TWISTNB	Q3B726	338 aa	Predicted RBP	18.86	■□□□□ 0.61
ATG4B-223	ENST00000493618	TMC4	Q7Z404	712 aa		18.86	■□□□□ 0.61
ATG4B-223	ENST00000493618	SEC31B	Q9NQW1	1179 aa		18.86	■□□□□ 0.61
ATG4B-223	ENST00000493618	CWC25	Q9NXE8	425 aa	Predicted RBP	18.86	■□□□□ 0.61
ATG4B-223	ENST00000493618	NSFL1C	Q9UNZ2	370 aa	Known RBP	18.86	■□□□□ 0.61
ATG4B-223	ENST00000493618	GMPS	P49915	693 aa	Predicted RBP	18.85	■□□□□ 0.61
ATG4B-223	ENST00000493618	G2E3	Q7L622	706 aa		18.85	■□□□□ 0.61
ATG4B-223	ENST00000493618	CCDC191	Q8NCU4	936 aa		18.85	■□□□□ 0.61
ATG4B-223	ENST00000493618	GPR101	Q96P66	508 aa	Predicted RBP	18.85	■□□□□ 0.61
ATG4B-223	ENST00000493618	STK31	Q9BXU1	1019 aa		18.85	■□□□□ 0.61
ATG4B-223	ENST00000493618	PI4KAP2	A4QPH2	592 aa		18.84	■□□□□ 0.61
ATG4B-223	ENST00000493618	TMEM88B	A6NKF7	163 aa		18.84	■□□□□ 0.61
ATG4B-223	ENST00000493618	YDJC	A8MPS7	323 aa		18.84	■□□□□ 0.61
ATG4B-223	ENST00000493618	C6orf229	H3BNL8	230 aa		18.84	■□□□□ 0.61
ATG4B-223	ENST00000493618	PCCA	P05165	728 aa	Predicted RBP	18.84	■□□□□ 0.61
ATG4B-223	ENST00000493618	HSPA1A	P0DMV8	641 aa	Known RBP	18.84	■□□□□ 0.61
ATG4B-223	ENST00000493618	HSPA1B	P0DMV9	641 aa	Known RBP	18.84	■□□□□ 0.61
ATG4B-223	ENST00000493618	FMR1	Q06787	632 aa	Known RBP eCLIP	18.84	■□□□□ 0.61
ATG4B-223	ENST00000493618	CIAPIN1	Q6FI81	312 aa		18.84	■□□□□ 0.61
ATG4B-223	ENST00000493618	PI4KAP1	Q8N8J0	262 aa		18.84	■□□□□ 0.61
ATG4B-223	ENST00000493618	GPRC5D	Q9NZD1	345 aa		18.84	■□□□□ 0.61
ATG4B-223	ENST00000493618	CAPN15	O75808	1086 aa		18.83	■□□□□ 0.6
ATG4B-223	ENST00000493618	RPS8	P62241	208 aa	Known RBP	18.83	■□□□□ 0.6
ATG4B-223	ENST00000493618	KSR2	Q6VAB6	950 aa		18.83	■□□□□ 0.6
ATG4B-223	ENST00000493618	BCL2L13	Q9BXK5	485 aa		18.83	■□□□□ 0.6
ATG4B-223	ENST00000493618	CHMP4A	Q9BY43	222 aa		18.83	■□□□□ 0.6
ATG4B-223	ENST00000493618	DBNDD1	Q9H9R9	158 aa		18.83	■□□□□ 0.6
ATG4B-223	ENST00000493618	POLL	Q9UGP5	575 aa		18.83	■□□□□ 0.6
ATG4B-223	ENST00000493618	SCN9A	Q15858	1988 aa		18.82	■□□□□ 0.6
ATG4B-223	ENST00000493618	CNTNAP1	P78357	1384 aa		18.82	■□□□□ 0.6
ATG4B-223	ENST00000493618	IL16	Q14005	1332 aa		18.82	■□□□□ 0.6
ATG4B-223	ENST00000493618	FANCI	Q9NVI1	1328 aa		18.82	■□□□□ 0.6
ATG4B-223	ENST00000493618	PDE8A	O60658	829 aa		18.82	■□□□□ 0.6
ATG4B-223	ENST00000493618	IGKV5-2	P06315	115 aa		18.82	■□□□□ 0.6
ATG4B-223	ENST00000493618	WASHC4	Q2M389	1173 aa		18.82	■□□□□ 0.6
ATG4B-223	ENST00000493618	COL13A1	Q5TAT6	717 aa	Predicted RBP	18.82	■□□□□ 0.6
ATG4B-223	ENST00000493618	USP50	Q70EL3	339 aa	Predicted RBP	18.82	■□□□□ 0.6
ATG4B-223	ENST00000493618	SHTN1	A0MZ66	631 aa		18.81	■□□□□ 0.6
ATG4B-223	ENST00000493618	SLC4A2	P04920	1241 aa		18.81	■□□□□ 0.6
ATG4B-223	ENST00000493618	TNIP1	Q15025	636 aa		18.81	■□□□□ 0.6
ATG4B-223	ENST00000493618	DOK7	Q18PE1	504 aa		18.81	■□□□□ 0.6
ATG4B-223	ENST00000493618	CWF19L2	Q2TBE0	894 aa	Known RBP	18.81	■□□□□ 0.6
ATG4B-223	ENST00000493618	CCDC152	Q4G0S7	254 aa		18.81	■□□□□ 0.6
ATG4B-223	ENST00000493618	FAM9B	Q8IZU0	186 aa		18.81	■□□□□ 0.6
ATG4B-223	ENST00000493618	ADARB2	Q9NS39	739 aa	Known RBP	18.81	■□□□□ 0.6
ATG4B-223	ENST00000493618	TRAF5	O00463	557 aa		18.8	■□□□□ 0.6
ATG4B-223	ENST00000493618	TBC1D16	Q8TBP0	767 aa		18.8	■□□□□ 0.6
ATG4B-223	ENST00000493618	ZBTB12	Q9Y330	459 aa	Predicted RBP	18.8	■□□□□ 0.6
ATG4B-223	ENST00000493618	POLR2A	P24928	1970 aa	Known RBP	18.8	■□□□□ 0.6
ATG4B-223	ENST00000493618	PSME4	Q14997	1843 aa		18.79	■□□□□ 0.6
ATG4B-223	ENST00000493618	HSP90B1	P14625	803 aa	Known RBP	18.79	■□□□□ 0.6
ATG4B-223	ENST00000493618	VEGFB	P49765	207 aa		18.79	■□□□□ 0.6
ATG4B-223	ENST00000493618	EXOSC9	Q06265	439 aa	Known RBP	18.79	■□□□□ 0.6
ATG4B-223	ENST00000493618	NEXN	Q0ZGT2	675 aa		18.79	■□□□□ 0.6
ATG4B-223	ENST00000493618	KCNQ5	Q9NR82	932 aa		18.79	■□□□□ 0.6
ATG4B-223	ENST00000493618	CDHR2	Q9BYE9	1310 aa		18.78	■□□□□ 0.6

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