RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 PDGFDQ9GZP0 370 aaPredicted RBP13.01□□□□□ -0.33
USP4-214ENST00000491791 CIAO1O76071 339 aa13□□□□□ -0.33
USP4-214ENST00000491791 A1BGP04217 495 aa13□□□□□ -0.33
USP4-214ENST00000491791 PTGER2P43116 358 aa13□□□□□ -0.33
USP4-214ENST00000491791 TCIRG1Q13488 830 aa13□□□□□ -0.33
USP4-214ENST00000491791 SKOR2Q2VWA4 1001 aaPredicted RBP13□□□□□ -0.33
USP4-214ENST00000491791 UBE3BQ7Z3V4 1068 aa13□□□□□ -0.33
USP4-214ENST00000491791 PIGBQ92521 554 aa13□□□□□ -0.33
USP4-214ENST00000491791 IL25Q9H293 177 aa13□□□□□ -0.33
USP4-214ENST00000491791 PALD1Q9ULE6 856 aa13□□□□□ -0.33
USP4-214ENST00000491791 STARD3NLO95772 234 aa12.99□□□□□ -0.33
USP4-214ENST00000491791 HSP90AA1P07900 732 aaKnown RBP12.99□□□□□ -0.33
USP4-214ENST00000491791 NEK4P51957 841 aa12.99□□□□□ -0.33
USP4-214ENST00000491791 SPRYD3Q8NCJ5 442 aa12.99□□□□□ -0.33
USP4-214ENST00000491791 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.99□□□□□ -0.33
USP4-214ENST00000491791 NHSQ6T4R5 1651 aa12.99□□□□□ -0.33
USP4-214ENST00000491791 IL15P40933 162 aaPredicted RBP12.98□□□□□ -0.33
USP4-214ENST00000491791 TNNI3KQ59H18 835 aa12.98□□□□□ -0.33
USP4-214ENST00000491791 KIAA1211Q6ZU35 1233 aa12.98□□□□□ -0.33
USP4-214ENST00000491791 TMX3Q96JJ7 454 aa12.98□□□□□ -0.33
USP4-214ENST00000491791 TTC14Q96N46 770 aa12.98□□□□□ -0.33
USP4-214ENST00000491791 SYT17Q9BSW7 474 aa12.98□□□□□ -0.33
USP4-214ENST00000491791 FHDC1Q9C0D6 1143 aaPredicted RBP12.98□□□□□ -0.33
USP4-214ENST00000491791 DIAPH3Q9NSV4 1193 aa12.98□□□□□ -0.33
USP4-214ENST00000491791 ISY1Q9ULR0 285 aaKnown RBP12.98□□□□□ -0.33
USP4-214ENST00000491791 FPGT-TNNI3KV9GXZ4 949 aa12.98□□□□□ -0.33
USP4-214ENST00000491791 SPEF2Q9C093 1822 aa12.97□□□□□ -0.33
USP4-214ENST00000491791 MED23Q9ULK4 1368 aa12.97□□□□□ -0.33
USP4-214ENST00000491791 CDHR2Q9BYE9 1310 aa12.97□□□□□ -0.33
USP4-214ENST00000491791 KAT6BQ8WYB5 2073 aa12.97□□□□□ -0.33
USP4-214ENST00000491791 ATP5J2-PTCD1G3V325 749 aa12.97□□□□□ -0.33
USP4-214ENST00000491791 PTCD1O75127 700 aaKnown RBP12.97□□□□□ -0.33
USP4-214ENST00000491791 PCCAP05165 728 aaPredicted RBP12.97□□□□□ -0.33
USP4-214ENST00000491791 NECTIN1Q15223 517 aa12.97□□□□□ -0.33
USP4-214ENST00000491791 TSGA10IPQ3SY00 556 aa12.97□□□□□ -0.33
USP4-214ENST00000491791 HSP90AB3PQ58FF7 597 aa12.97□□□□□ -0.33
USP4-214ENST00000491791 LMBR1LQ6UX01 489 aa12.97□□□□□ -0.33
USP4-214ENST00000491791 ATG9AQ7Z3C6 839 aa12.97□□□□□ -0.33
USP4-214ENST00000491791 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.97□□□□□ -0.33
USP4-214ENST00000491791 MAP4K1Q92918 833 aa12.97□□□□□ -0.33
USP4-214ENST00000491791 ARXQ96QS3 562 aa12.97□□□□□ -0.33
USP4-214ENST00000491791 BCL11AQ9H165 835 aa12.97□□□□□ -0.33
USP4-214ENST00000491791 ALDH8A1Q9H2A2 487 aaPredicted RBP12.97□□□□□ -0.33
USP4-214ENST00000491791 SNX14Q9Y5W7 946 aa12.97□□□□□ -0.33
USP4-214ENST00000491791 ZNF831Q5JPB2 1677 aa12.96□□□□□ -0.33
USP4-214ENST00000491791 ERVV-1B6SEH8 477 aa12.96□□□□□ -0.33
USP4-214ENST00000491791 TRAK2O60296 914 aa12.96□□□□□ -0.33
USP4-214ENST00000491791 CSF1RP07333 972 aa12.96□□□□□ -0.33
USP4-214ENST00000491791 CYP19A1P11511 503 aaPredicted RBP12.96□□□□□ -0.33
USP4-214ENST00000491791 PIP4K2AP48426 406 aaPredicted RBP12.96□□□□□ -0.33
USP4-214ENST00000491791 DBNLQ9UJU6 430 aaKnown RBP12.96□□□□□ -0.33
USP4-214ENST00000491791 ASAP1Q9ULH1 1129 aa12.96□□□□□ -0.33
USP4-214ENST00000491791 CCDC171Q6TFL3 1326 aa12.95□□□□□ -0.34
USP4-214ENST00000491791 MAP3K15Q6ZN16 1313 aa12.95□□□□□ -0.34
USP4-214ENST00000491791 ANKRD36CQ5JPF3 1778 aa12.95□□□□□ -0.34
USP4-214ENST00000491791 EYA2O00167 538 aa12.95□□□□□ -0.34
USP4-214ENST00000491791 TFCP2Q12800 502 aa12.95□□□□□ -0.34
USP4-214ENST00000491791 SLC27A3Q5K4L6 730 aa12.95□□□□□ -0.34
USP4-214ENST00000491791 CWC27Q6UX04 472 aaKnown RBP12.95□□□□□ -0.34
USP4-214ENST00000491791 GIGYF2Q6Y7W6 1299 aaKnown RBP12.95□□□□□ -0.34
USP4-214ENST00000491791 DNAJC10Q8IXB1 793 aa12.95□□□□□ -0.34
USP4-214ENST00000491791 HAUS7Q99871 368 aa12.95□□□□□ -0.34
USP4-214ENST00000491791 CCDC8Q9H0W5 538 aaPredicted RBP12.95□□□□□ -0.34
USP4-214ENST00000491791 ABCC12Q96J65 1359 aa12.94□□□□□ -0.34
USP4-214ENST00000491791 FSD2A1L4K1 749 aa12.94□□□□□ -0.34
USP4-214ENST00000491791 BAG4O95429 457 aaKnown RBP12.94□□□□□ -0.34
USP4-214ENST00000491791 MAP4K4O95819 1239 aaPredicted RBP12.94□□□□□ -0.34
USP4-214ENST00000491791 POLD1P28340 1107 aa12.94□□□□□ -0.34
USP4-214ENST00000491791 IL6STP40189 918 aaPredicted RBP12.94□□□□□ -0.34
USP4-214ENST00000491791 VPS53Q5VIR6 699 aa12.94□□□□□ -0.34
USP4-214ENST00000491791 USPL1Q5W0Q7 1092 aa12.94□□□□□ -0.34
USP4-214ENST00000491791 KIF6Q6ZMV9 814 aa12.94□□□□□ -0.34
USP4-214ENST00000491791 ZBTB38Q8NAP3 1195 aaPredicted RBP12.94□□□□□ -0.34
USP4-214ENST00000491791 KLHDC4Q8TBB5 520 aa12.94□□□□□ -0.34
USP4-214ENST00000491791 SLC16A10Q8TF71 515 aa12.94□□□□□ -0.34
USP4-214ENST00000491791 AK7Q96M32 723 aa12.94□□□□□ -0.34
USP4-214ENST00000491791 SGIP1Q9BQI5 828 aa12.94□□□□□ -0.34
USP4-214ENST00000491791 SIL1Q9H173 461 aa12.94□□□□□ -0.34
USP4-214ENST00000491791 ZSWIM6Q9HCJ5 1215 aa12.94□□□□□ -0.34
USP4-214ENST00000491791 TLR7Q9NYK1 1049 aaKnown RBP12.94□□□□□ -0.34
USP4-214ENST00000491791 PALLDQ8WX93 1383 aa12.94□□□□□ -0.34
USP4-214ENST00000491791 UTRNP46939 3433 aa12.93□□□□□ -0.34
USP4-214ENST00000491791 SSFA2P28290 1259 aa12.93□□□□□ -0.34
USP4-214ENST00000491791 RASEFQ8IZ41 740 aa12.93□□□□□ -0.34
USP4-214ENST00000491791 ZNF784Q8NCA9 323 aaPredicted RBP12.93□□□□□ -0.34
USP4-214ENST00000491791 SYTL4Q96C24 671 aaPredicted RBP12.93□□□□□ -0.34
USP4-214ENST00000491791 SLC4A9Q96Q91 983 aa12.93□□□□□ -0.34
USP4-214ENST00000491791 HMG20BQ9P0W2 317 aa12.93□□□□□ -0.34
USP4-214ENST00000491791 ZNF609O15014 1411 aa12.93□□□□□ -0.34
USP4-214ENST00000491791 RPAP1Q9BWH6 1393 aaPredicted RBP12.93□□□□□ -0.34
USP4-214ENST00000491791 BTAF1O14981 1849 aa12.92□□□□□ -0.34
USP4-214ENST00000491791 GOLGA6L22H0YM25 854 aa12.92□□□□□ -0.34
USP4-214ENST00000491791 RGL2O15211 777 aa12.92□□□□□ -0.34
USP4-214ENST00000491791 BRD1O95696 1058 aa12.92□□□□□ -0.34
USP4-214ENST00000491791 PDIA4P13667 645 aaKnown RBP12.92□□□□□ -0.34
USP4-214ENST00000491791 NMIQ13287 307 aaPredicted RBP12.92□□□□□ -0.34
USP4-214ENST00000491791 ZNF827Q17R98 1081 aa12.92□□□□□ -0.34
USP4-214ENST00000491791 ZSCAN31Q96LW9 406 aaPredicted RBP12.92□□□□□ -0.34
USP4-214ENST00000491791 ZBTB3Q9H5J0 574 aa12.92□□□□□ -0.34
USP4-214ENST00000491791 ZDHHC9Q9Y397 364 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms