RNA–Protein interactions for RNA: ENST00000491581.5

HDAC3-211, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 777 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-211ENST00000491581 ITGBL1O95965 494 aaPredicted RBP11.59□□□□□ -0.55
HDAC3-211ENST00000491581 IFFO2Q5TF58 517 aa11.59□□□□□ -0.55
HDAC3-211ENST00000491581 G2E3Q7L622 706 aa11.59□□□□□ -0.55
HDAC3-211ENST00000491581 PLBD2Q8NHP8 589 aa11.59□□□□□ -0.55
HDAC3-211ENST00000491581 MYD88Q99836 296 aa11.59□□□□□ -0.55
HDAC3-211ENST00000491581 HACL1Q9UJ83 578 aa11.59□□□□□ -0.55
HDAC3-211ENST00000491581 ATP6V0A2Q9Y487 856 aa11.59□□□□□ -0.55
HDAC3-211ENST00000491581 SH3TC1Q8TE82 1336 aa11.59□□□□□ -0.55
HDAC3-211ENST00000491581 PASKQ96RG2 1323 aa11.59□□□□□ -0.55
HDAC3-211ENST00000491581 YDJCA8MPS7 323 aa11.58□□□□□ -0.56
HDAC3-211ENST00000491581 TRAF5O00463 557 aa11.58□□□□□ -0.56
HDAC3-211ENST00000491581 SEC31BQ9NQW1 1179 aa11.58□□□□□ -0.56
HDAC3-211ENST00000491581 KCNQ5Q9NR82 932 aa11.58□□□□□ -0.56
HDAC3-211ENST00000491581 DBF4Q9UBU7 674 aaPredicted RBP11.58□□□□□ -0.56
HDAC3-211ENST00000491581 SCN9AQ15858 1988 aa11.58□□□□□ -0.56
HDAC3-211ENST00000491581 RIMBP2O15034 1052 aa11.57□□□□□ -0.56
HDAC3-211ENST00000491581 RAD17O75943 681 aa11.57□□□□□ -0.56
HDAC3-211ENST00000491581 HSPA1AP0DMV8 641 aaKnown RBP11.57□□□□□ -0.56
HDAC3-211ENST00000491581 HSPA1BP0DMV9 641 aaKnown RBP11.57□□□□□ -0.56
HDAC3-211ENST00000491581 CXCL9Q07325 125 aa11.57□□□□□ -0.56
HDAC3-211ENST00000491581 LDHDQ86WU2 507 aa11.57□□□□□ -0.56
HDAC3-211ENST00000491581 GPC2Q8N158 579 aa11.57□□□□□ -0.56
HDAC3-211ENST00000491581 JDP2Q8WYK2 163 aa11.57□□□□□ -0.56
HDAC3-211ENST00000491581 IFT57Q9NWB7 429 aa11.57□□□□□ -0.56
HDAC3-211ENST00000491581 EIF6P56537 245 aaKnown RBP11.56□□□□□ -0.56
HDAC3-211ENST00000491581 GPSM2P81274 684 aa11.56□□□□□ -0.56
HDAC3-211ENST00000491581 GRAPQ13588 217 aa11.56□□□□□ -0.56
HDAC3-211ENST00000491581 HSP90AB3PQ58FF7 597 aa11.56□□□□□ -0.56
HDAC3-211ENST00000491581 DPP8Q6V1X1 898 aaPredicted RBP11.56□□□□□ -0.56
HDAC3-211ENST00000491581 DDX46Q7L014 1031 aaKnown RBP11.56□□□□□ -0.56
HDAC3-211ENST00000491581 RIC3Q7Z5B4 369 aa11.56□□□□□ -0.56
HDAC3-211ENST00000491581 NIM1KQ8IY84 436 aa11.56□□□□□ -0.56
HDAC3-211ENST00000491581 GRAPLQ8TC17 118 aaPredicted RBP11.56□□□□□ -0.56
HDAC3-211ENST00000491581 ZBTB12Q9Y330 459 aaPredicted RBP11.56□□□□□ -0.56
HDAC3-211ENST00000491581 IQCA1LA6NCM1 817 aa11.55□□□□□ -0.56
HDAC3-211ENST00000491581 IRS4O14654 1257 aaPredicted RBP11.55□□□□□ -0.56
HDAC3-211ENST00000491581 CAPN15O75808 1086 aa11.55□□□□□ -0.56
HDAC3-211ENST00000491581 GMPSP49915 693 aaPredicted RBP11.55□□□□□ -0.56
HDAC3-211ENST00000491581 GNAI1P63096 354 aa11.55□□□□□ -0.56
HDAC3-211ENST00000491581 DOK7Q18PE1 504 aa11.55□□□□□ -0.56
HDAC3-211ENST00000491581 SP8Q8IXZ3 490 aa11.55□□□□□ -0.56
HDAC3-211ENST00000491581 CNTROBQ8N137 903 aa11.55□□□□□ -0.56
HDAC3-211ENST00000491581 MPNDQ8N594 471 aa11.55□□□□□ -0.56
HDAC3-211ENST00000491581 DBNDD1Q9H9R9 158 aa11.55□□□□□ -0.56
HDAC3-211ENST00000491581 SPINK5Q9NQ38 1064 aaPredicted RBP11.55□□□□□ -0.56
HDAC3-211ENST00000491581 HYPKQ9NX55 129 aa11.55□□□□□ -0.56
HDAC3-211ENST00000491581 POLLQ9UGP5 575 aa11.55□□□□□ -0.56
HDAC3-211ENST00000491581 U3KPZ7 1027 aaPredicted RBP11.55□□□□□ -0.56
HDAC3-211ENST00000491581 EGFRP00533 1210 aa11.54□□□□□ -0.56
HDAC3-211ENST00000491581 HOXB7P09629 217 aa11.54□□□□□ -0.56
HDAC3-211ENST00000491581 HIRAP54198 1017 aaPredicted RBP11.54□□□□□ -0.56
HDAC3-211ENST00000491581 CWF19L2Q2TBE0 894 aaKnown RBP11.54□□□□□ -0.56
HDAC3-211ENST00000491581 CC2D2BQ6DHV5 1058 aa11.54□□□□□ -0.56
HDAC3-211ENST00000491581 WWC1Q8IX03 1113 aa11.54□□□□□ -0.56
HDAC3-211ENST00000491581 TRPM4Q8TD43 1214 aa11.54□□□□□ -0.56
HDAC3-211ENST00000491581 RTFDC1Q9BY42 306 aaPredicted RBP11.54□□□□□ -0.56
HDAC3-211ENST00000491581 MRS2Q9HD23 443 aa11.54□□□□□ -0.56
HDAC3-211ENST00000491581 CREBZFQ9NS37 354 aa11.54□□□□□ -0.56
HDAC3-211ENST00000491581 NSFL1CQ9UNZ2 370 aaKnown RBP11.54□□□□□ -0.56
HDAC3-211ENST00000491581 MAP3K2Q9Y2U5 619 aa11.54□□□□□ -0.56
HDAC3-211ENST00000491581 TRPM7Q96QT4 1865 aa11.54□□□□□ -0.56
HDAC3-211ENST00000491581 MYH3P11055 1940 aa11.54□□□□□ -0.56
HDAC3-211ENST00000491581 ZNF646O15015 1829 aaPredicted RBP11.53□□□□□ -0.56
HDAC3-211ENST00000491581 BBOX1O75936 387 aa11.53□□□□□ -0.56
HDAC3-211ENST00000491581 IGKV5-2P06315 115 aa11.53□□□□□ -0.56
HDAC3-211ENST00000491581 VEGFBP49765 207 aa11.53□□□□□ -0.56
HDAC3-211ENST00000491581 POLR2AP24928 1970 aaKnown RBP11.53□□□□□ -0.56
HDAC3-211ENST00000491581 CNTNAP1P78357 1384 aa11.53□□□□□ -0.56
HDAC3-211ENST00000491581 PI4KAP2A4QPH2 592 aa11.52□□□□□ -0.57
HDAC3-211ENST00000491581 GOLGA2Q08379 1002 aa11.52□□□□□ -0.57
HDAC3-211ENST00000491581 KIAA2012Q0VF49 1180 aa11.52□□□□□ -0.57
HDAC3-211ENST00000491581 GRM1Q13255 1194 aa11.52□□□□□ -0.57
HDAC3-211ENST00000491581 SF3B3Q15393 1217 aaKnown RBP11.52□□□□□ -0.57
HDAC3-211ENST00000491581 CST9Q5W186 159 aa11.52□□□□□ -0.57
HDAC3-211ENST00000491581 PI4KAP1Q8N8J0 262 aa11.52□□□□□ -0.57
HDAC3-211ENST00000491581 GPRC5DQ9NZD1 345 aa11.52□□□□□ -0.57
HDAC3-211ENST00000491581 ZNRF3Q9ULT6 936 aa11.52□□□□□ -0.57
HDAC3-211ENST00000491581 RTL9Q8NET4 1388 aa11.52□□□□□ -0.57
HDAC3-211ENST00000491581 ZNF316A6NFI3 1004 aaPredicted RBP11.51□□□□□ -0.57
HDAC3-211ENST00000491581 TMEM88BA6NKF7 163 aa11.51□□□□□ -0.57
HDAC3-211ENST00000491581 C6orf229H3BNL8 230 aa11.51□□□□□ -0.57
HDAC3-211ENST00000491581 FOXN1O15353 648 aa11.51□□□□□ -0.57
HDAC3-211ENST00000491581 LMOD1P29536 600 aaPredicted RBP11.51□□□□□ -0.57
HDAC3-211ENST00000491581 SAMD7Q7Z3H4 446 aa11.51□□□□□ -0.57
HDAC3-211ENST00000491581 ZBTB38Q8NAP3 1195 aaPredicted RBP11.51□□□□□ -0.57
HDAC3-211ENST00000491581 METTL22Q9BUU2 404 aaPredicted RBP11.51□□□□□ -0.57
HDAC3-211ENST00000491581 GLIS2Q9BZE0 524 aaPredicted RBP11.51□□□□□ -0.57
HDAC3-211ENST00000491581 SCAF8Q9UPN6 1271 aaKnown RBP11.51□□□□□ -0.57
HDAC3-211ENST00000491581 ASTN2O75129 1339 aaPredicted RBP11.51□□□□□ -0.57
HDAC3-211ENST00000491581 FANCIQ9NVI1 1328 aa11.51□□□□□ -0.57
HDAC3-211ENST00000491581 A0A1B0GUL6 1792 aa11.51□□□□□ -0.57
HDAC3-211ENST00000491581 PSMD14O00487 310 aa11.5□□□□□ -0.57
HDAC3-211ENST00000491581 TWISTNBQ3B726 338 aaPredicted RBP11.5□□□□□ -0.57
HDAC3-211ENST00000491581 CIAPIN1Q6FI81 312 aa11.5□□□□□ -0.57
HDAC3-211ENST00000491581 FAM9BQ8IZU0 186 aa11.5□□□□□ -0.57
HDAC3-211ENST00000491581 TBC1D16Q8TBP0 767 aa11.5□□□□□ -0.57
HDAC3-211ENST00000491581 PSME4Q14997 1843 aa11.49□□□□□ -0.57
HDAC3-211ENST00000491581 ECE2O60344 883 aa11.49□□□□□ -0.57
HDAC3-211ENST00000491581 NPM3O75607 178 aaKnown RBP11.49□□□□□ -0.57
HDAC3-211ENST00000491581 RPS8P62241 208 aaKnown RBP11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 89.8 ms