RNA–Protein interactions for RNA: ENST00000487984.1

SDC3-204, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 355 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-204ENST00000487984 MPNDQ8N594 471 aa15.88■□□□□ 0.13
SDC3-204ENST00000487984 SUPT20HQ8NEM7 779 aa15.88■□□□□ 0.13
SDC3-204ENST00000487984 VPS33BQ9H267 617 aa15.88■□□□□ 0.13
SDC3-204ENST00000487984 IRS4O14654 1257 aaPredicted RBP15.87■□□□□ 0.13
SDC3-204ENST00000487984 SF3B3Q15393 1217 aaKnown RBP15.87■□□□□ 0.13
SDC3-204ENST00000487984 IFFO2Q5TF58 517 aa15.87■□□□□ 0.13
SDC3-204ENST00000487984 PNMA8AQ86V59 439 aaPredicted RBP15.87■□□□□ 0.13
SDC3-204ENST00000487984 MYD88Q99836 296 aa15.87■□□□□ 0.13
SDC3-204ENST00000487984 CREBZFQ9NS37 354 aa15.87■□□□□ 0.13
SDC3-204ENST00000487984 PASKQ96RG2 1323 aa15.87■□□□□ 0.13
SDC3-204ENST00000487984 DDX60Q8IY21 1712 aaKnown RBP15.86■□□□□ 0.13
SDC3-204ENST00000487984 SCNN1DP51172 638 aa15.86■□□□□ 0.13
SDC3-204ENST00000487984 TMC4Q7Z404 712 aa15.86■□□□□ 0.13
SDC3-204ENST00000487984 ZBTB38Q8NAP3 1195 aaPredicted RBP15.86■□□□□ 0.13
SDC3-204ENST00000487984 CELF1Q92879 486 aaKnown RBP15.86■□□□□ 0.13
SDC3-204ENST00000487984 CHMP4AQ9BY43 222 aa15.86■□□□□ 0.13
SDC3-204ENST00000487984 CLEC11AQ9Y240 323 aa15.86■□□□□ 0.13
SDC3-204ENST00000487984 ITGBL1O95965 494 aaPredicted RBP15.85■□□□□ 0.13
SDC3-204ENST00000487984 LMOD1P29536 600 aaPredicted RBP15.85■□□□□ 0.13
SDC3-204ENST00000487984 KIAA2012Q0VF49 1180 aa15.85■□□□□ 0.13
SDC3-204ENST00000487984 ZNRF3Q9ULT6 936 aa15.85■□□□□ 0.13
SDC3-204ENST00000487984 ADAMTSL1Q8N6G6 1762 aa15.85■□□□□ 0.13
SDC3-204ENST00000487984 PCNTO95613 3336 aa15.84■□□□□ 0.13
SDC3-204ENST00000487984 DDX58O95786 925 aaKnown RBP15.84■□□□□ 0.13
SDC3-204ENST00000487984 EPS15P42566 896 aa15.84■□□□□ 0.13
SDC3-204ENST00000487984 NCBP3Q53F19 620 aaKnown RBP15.84■□□□□ 0.13
SDC3-204ENST00000487984 MAP1SQ66K74 1059 aaPredicted RBP15.84■□□□□ 0.13
SDC3-204ENST00000487984 CCDC191Q8NCU4 936 aa15.84■□□□□ 0.13
SDC3-204ENST00000487984 METTL22Q9BUU2 404 aaPredicted RBP15.84■□□□□ 0.13
SDC3-204ENST00000487984 LTBP1Q14766 1721 aa15.84■□□□□ 0.13
SDC3-204ENST00000487984 IL16Q14005 1332 aa15.84■□□□□ 0.13
SDC3-204ENST00000487984 DUOX1Q9NRD9 1551 aa15.83■□□□□ 0.13
SDC3-204ENST00000487984 COL4A1P02462 1669 aa15.83■□□□□ 0.13
SDC3-204ENST00000487984 PCCAP05165 728 aaPredicted RBP15.83■□□□□ 0.12
SDC3-204ENST00000487984 CXCL9Q07325 125 aa15.83■□□□□ 0.12
SDC3-204ENST00000487984 TWISTNBQ3B726 338 aaPredicted RBP15.83■□□□□ 0.12
SDC3-204ENST00000487984 CWC25Q9NXE8 425 aaPredicted RBP15.83■□□□□ 0.12
SDC3-204ENST00000487984 MAP3K2Q9Y2U5 619 aa15.83■□□□□ 0.12
SDC3-204ENST00000487984 CNTROBQ8N137 903 aa15.82■□□□□ 0.12
SDC3-204ENST00000487984 JARID2Q92833 1246 aaPredicted RBP15.82■□□□□ 0.12
SDC3-204ENST00000487984 STK31Q9BXU1 1019 aa15.82■□□□□ 0.12
SDC3-204ENST00000487984 MKRN1Q9UHC7 482 aaKnown RBP15.82■□□□□ 0.12
SDC3-204ENST00000487984 LRRC37AA6NMS7 1700 aa15.82■□□□□ 0.12
SDC3-204ENST00000487984 TAF1P21675 1872 aa15.82■□□□□ 0.12
SDC3-204ENST00000487984 PI4KAP2A4QPH2 592 aa15.81■□□□□ 0.12
SDC3-204ENST00000487984 HSP90B1P14625 803 aaKnown RBP15.81■□□□□ 0.12
SDC3-204ENST00000487984 RPS8P62241 208 aaKnown RBP15.81■□□□□ 0.12
SDC3-204ENST00000487984 GPSM2P81274 684 aa15.81■□□□□ 0.12
SDC3-204ENST00000487984 KSR2Q6VAB6 950 aa15.81■□□□□ 0.12
SDC3-204ENST00000487984 PI4KAP1Q8N8J0 262 aa15.81■□□□□ 0.12
SDC3-204ENST00000487984 SEC31BQ9NQW1 1179 aa15.81■□□□□ 0.12
SDC3-204ENST00000487984 FANCIQ9NVI1 1328 aa15.81■□□□□ 0.12
SDC3-204ENST00000487984 GPRC5DQ9NZD1 345 aa15.81■□□□□ 0.12
SDC3-204ENST00000487984 NSFL1CQ9UNZ2 370 aaKnown RBP15.81■□□□□ 0.12
SDC3-204ENST00000487984 SALL2Q9Y467 1007 aaPredicted RBP15.81■□□□□ 0.12
SDC3-204ENST00000487984 TMEM88BA6NKF7 163 aa15.8■□□□□ 0.12
SDC3-204ENST00000487984 YDJCA8MPS7 323 aa15.8■□□□□ 0.12
SDC3-204ENST00000487984 RAD17O75943 681 aa15.8■□□□□ 0.12
SDC3-204ENST00000487984 IGKV5-2P06315 115 aa15.8■□□□□ 0.12
SDC3-204ENST00000487984 GMPSP49915 693 aaPredicted RBP15.8■□□□□ 0.12
SDC3-204ENST00000487984 CIAPIN1Q6FI81 312 aa15.8■□□□□ 0.12
SDC3-204ENST00000487984 USP50Q70EL3 339 aaPredicted RBP15.8■□□□□ 0.12
SDC3-204ENST00000487984 G2E3Q7L622 706 aa15.8■□□□□ 0.12
SDC3-204ENST00000487984 POLLQ9UGP5 575 aa15.8■□□□□ 0.12
SDC3-204ENST00000487984 CNTNAP1P78357 1384 aa15.79■□□□□ 0.12
SDC3-204ENST00000487984 PDE8AO60658 829 aa15.79■□□□□ 0.12
SDC3-204ENST00000487984 SLC4A2P04920 1241 aa15.79■□□□□ 0.12
SDC3-204ENST00000487984 WASHC4Q2M389 1173 aa15.79■□□□□ 0.12
SDC3-204ENST00000487984 CCDC152Q4G0S7 254 aa15.79■□□□□ 0.12
SDC3-204ENST00000487984 ADARB2Q9NS39 739 aaKnown RBP15.79■□□□□ 0.12
SDC3-204ENST00000487984 CDHR2Q9BYE9 1310 aa15.78■□□□□ 0.12
SDC3-204ENST00000487984 C6orf229H3BNL8 230 aa15.78■□□□□ 0.12
SDC3-204ENST00000487984 HSPA1AP0DMV8 641 aaKnown RBP15.78■□□□□ 0.12
SDC3-204ENST00000487984 HSPA1BP0DMV9 641 aaKnown RBP15.78■□□□□ 0.12
SDC3-204ENST00000487984 TNIP1Q15025 636 aa15.78■□□□□ 0.12
SDC3-204ENST00000487984 WDR63Q8IWG1 891 aa15.78■□□□□ 0.12
SDC3-204ENST00000487984 CCDC85AQ96PX6 553 aaPredicted RBP15.78■□□□□ 0.12
SDC3-204ENST00000487984 RIMBP2O15034 1052 aa15.77■□□□□ 0.12
SDC3-204ENST00000487984 NEXNQ0ZGT2 675 aa15.77■□□□□ 0.12
SDC3-204ENST00000487984 CWF19L2Q2TBE0 894 aaKnown RBP15.77■□□□□ 0.12
SDC3-204ENST00000487984 TBC1D16Q8TBP0 767 aa15.77■□□□□ 0.12
SDC3-204ENST00000487984 GPR101Q96P66 508 aaPredicted RBP15.77■□□□□ 0.12
SDC3-204ENST00000487984 BCL2L13Q9BXK5 485 aa15.77■□□□□ 0.12
SDC3-204ENST00000487984 DBNDD1Q9H9R9 158 aa15.77■□□□□ 0.12
SDC3-204ENST00000487984 NEURL1BA8MQ27 555 aa15.76■□□□□ 0.11
SDC3-204ENST00000487984 CTSWP56202 376 aa15.76■□□□□ 0.11
SDC3-204ENST00000487984 FMR1Q06787 632 aaKnown RBP eCLIP15.76■□□□□ 0.11
SDC3-204ENST00000487984 FLIIQ13045 1269 aa15.76■□□□□ 0.11
SDC3-204ENST00000487984 EYA3Q99504 573 aa15.76■□□□□ 0.11
SDC3-204ENST00000487984 PODXL2Q9NZ53 605 aa15.76■□□□□ 0.11
SDC3-204ENST00000487984 SHTN1A0MZ66 631 aa15.75■□□□□ 0.11
SDC3-204ENST00000487984 PSMD14O00487 310 aa15.75■□□□□ 0.11
SDC3-204ENST00000487984 ECE2O60344 883 aa15.75■□□□□ 0.11
SDC3-204ENST00000487984 VAMP4O75379 141 aa15.75■□□□□ 0.11
SDC3-204ENST00000487984 VEGFBP49765 207 aa15.75■□□□□ 0.11
SDC3-204ENST00000487984 DOK7Q18PE1 504 aa15.75■□□□□ 0.11
SDC3-204ENST00000487984 COL13A1Q5TAT6 717 aaPredicted RBP15.75■□□□□ 0.11
SDC3-204ENST00000487984 FAM9BQ8IZU0 186 aa15.75■□□□□ 0.11
SDC3-204ENST00000487984 SPINK5Q9NQ38 1064 aaPredicted RBP15.75■□□□□ 0.11
SDC3-204ENST00000487984 ANKIB1Q9P2G1 1089 aa15.75■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms