RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 KLF15Q9UIH9 416 aa9.53□□□□□ -0.88
USP48-209ENST00000487880 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.53□□□□□ -0.88
USP48-209ENST00000487880 NFKB1P19838 968 aa9.52□□□□□ -0.89
USP48-209ENST00000487880 TARSP26639 723 aaKnown RBP9.52□□□□□ -0.89
USP48-209ENST00000487880 ALKBH8Q96BT7 664 aaKnown RBP9.52□□□□□ -0.89
USP48-209ENST00000487880 CNTNAP3BQ96NU0 1288 aa9.52□□□□□ -0.89
USP48-209ENST00000487880 CNTNAP3Q9BZ76 1288 aa9.52□□□□□ -0.89
USP48-209ENST00000487880 ELP3Q9H9T3 547 aa9.52□□□□□ -0.89
USP48-209ENST00000487880 PRR12Q9ULL5 1215 aa9.52□□□□□ -0.89
USP48-209ENST00000487880 TREHO43280 583 aa9.51□□□□□ -0.89
USP48-209ENST00000487880 SIN3BO75182 1162 aa9.51□□□□□ -0.89
USP48-209ENST00000487880 SLURP2P0DP57 97 aa9.51□□□□□ -0.89
USP48-209ENST00000487880 MFAP1P55081 439 aaKnown RBP9.51□□□□□ -0.89
USP48-209ENST00000487880 NEUROD1Q13562 356 aa9.51□□□□□ -0.89
USP48-209ENST00000487880 DSC3Q14574 896 aa9.51□□□□□ -0.89
USP48-209ENST00000487880 ZNF438Q7Z4V0 828 aa9.51□□□□□ -0.89
USP48-209ENST00000487880 SYT9Q86SS6 491 aa9.51□□□□□ -0.89
USP48-209ENST00000487880 ZSCAN29Q8IWY8 852 aaPredicted RBP9.51□□□□□ -0.89
USP48-209ENST00000487880 BHMTQ93088 406 aa9.51□□□□□ -0.89
USP48-209ENST00000487880 MDFIQ99750 246 aa9.51□□□□□ -0.89
USP48-209ENST00000487880 TMEM63CQ9P1W3 806 aa9.51□□□□□ -0.89
USP48-209ENST00000487880 ADAMTS2O95450 1211 aa9.5□□□□□ -0.89
USP48-209ENST00000487880 RARAP10276 462 aa9.5□□□□□ -0.89
USP48-209ENST00000487880 HOXD8P13378 290 aaPredicted RBP9.5□□□□□ -0.89
USP48-209ENST00000487880 KRT25Q7Z3Z0 450 aa9.5□□□□□ -0.89
USP48-209ENST00000487880 TTC16Q8NEE8 873 aa9.5□□□□□ -0.89
USP48-209ENST00000487880 PNMA5Q96PV4 448 aa9.5□□□□□ -0.89
USP48-209ENST00000487880 PODXL2Q9NZ53 605 aa9.5□□□□□ -0.89
USP48-209ENST00000487880 MMP20O60882 483 aa9.49□□□□□ -0.89
USP48-209ENST00000487880 TNFRSF21O75509 655 aa9.49□□□□□ -0.89
USP48-209ENST00000487880 ADH6P28332 368 aa9.49□□□□□ -0.89
USP48-209ENST00000487880 PCBP4P57723 403 aaKnown RBP9.49□□□□□ -0.89
USP48-209ENST00000487880 ABI2Q9NYB9 513 aaPredicted RBP9.49□□□□□ -0.89
USP48-209ENST00000487880 FMR1Q06787 632 aaKnown RBP eCLIP9.48□□□□□ -0.89
USP48-209ENST00000487880 SLCO4C1Q6ZQN7 724 aa9.48□□□□□ -0.89
USP48-209ENST00000487880 TMC1Q8TDI8 760 aa9.48□□□□□ -0.89
USP48-209ENST00000487880 SNX29Q8TEQ0 813 aa9.48□□□□□ -0.89
USP48-209ENST00000487880 TNFRSF25Q93038 417 aa9.48□□□□□ -0.89
USP48-209ENST00000487880 ACDQ96AP0 544 aa9.48□□□□□ -0.89
USP48-209ENST00000487880 OXCT2Q9BYC2 517 aaPredicted RBP9.48□□□□□ -0.89
USP48-209ENST00000487880 TLR7Q9NYK1 1049 aaKnown RBP9.48□□□□□ -0.89
USP48-209ENST00000487880 ANKRD33BA6NCL7 494 aa9.47□□□□□ -0.89
USP48-209ENST00000487880 ERCC3P19447 782 aa9.47□□□□□ -0.89
USP48-209ENST00000487880 SOX18P35713 384 aa9.47□□□□□ -0.89
USP48-209ENST00000487880 FCHSD1Q86WN1 690 aa9.47□□□□□ -0.89
USP48-209ENST00000487880 NPAS4Q8IUM7 802 aa9.47□□□□□ -0.89
USP48-209ENST00000487880 GOLGA6L1Q8N7Z2 621 aa9.47□□□□□ -0.89
USP48-209ENST00000487880 OR13H1Q8NG92 308 aa9.47□□□□□ -0.89
USP48-209ENST00000487880 CHRDQ9H2X0 955 aa9.47□□□□□ -0.89
USP48-209ENST00000487880 CNTN3Q9P232 1028 aa9.47□□□□□ -0.89
USP48-209ENST00000487880 FOXD3Q9UJU5 478 aaPredicted RBP9.47□□□□□ -0.89
USP48-209ENST00000487880 GGA1Q9UJY5 639 aa9.47□□□□□ -0.89
USP48-209ENST00000487880 GDF2Q9UK05 429 aaPredicted RBP9.47□□□□□ -0.89
USP48-209ENST00000487880 ADARB2-AS1A8MUL3 147 aa9.46□□□□□ -0.9
USP48-209ENST00000487880 DHX32Q7L7V1 743 aaKnown RBP9.46□□□□□ -0.9
USP48-209ENST00000487880 NIF3L1Q9GZT8 377 aa9.46□□□□□ -0.9
USP48-209ENST00000487880 NEURL1BA8MQ27 555 aa9.45□□□□□ -0.9
USP48-209ENST00000487880 COL19A1Q14993 1142 aa9.45□□□□□ -0.9
USP48-209ENST00000487880 TTC39BQ5VTQ0 682 aaPredicted RBP9.45□□□□□ -0.9
USP48-209ENST00000487880 TRPM4Q8TD43 1214 aa9.45□□□□□ -0.9
USP48-209ENST00000487880 CCDC9Q9Y3X0 531 aaKnown RBP9.45□□□□□ -0.9
USP48-209ENST00000487880 NRLP54845 237 aa9.44□□□□□ -0.9
USP48-209ENST00000487880 GPLD1P80108 840 aa9.44□□□□□ -0.9
USP48-209ENST00000487880 ORC1Q13415 861 aa9.44□□□□□ -0.9
USP48-209ENST00000487880 C1orf127Q8N9H9 656 aa9.44□□□□□ -0.9
USP48-209ENST00000487880 LRRC4BQ9NT99 713 aa9.44□□□□□ -0.9
USP48-209ENST00000487880 PHACTR2O75167 634 aa9.43□□□□□ -0.9
USP48-209ENST00000487880 CYP2E1P05181 493 aaPredicted RBP9.43□□□□□ -0.9
USP48-209ENST00000487880 NEFLP07196 543 aa9.43□□□□□ -0.9
USP48-209ENST00000487880 P4HBP07237 508 aaKnown RBP9.43□□□□□ -0.9
USP48-209ENST00000487880 PSAPP07602 524 aa9.43□□□□□ -0.9
USP48-209ENST00000487880 EPXP11678 715 aa9.43□□□□□ -0.9
USP48-209ENST00000487880 PLCB3Q01970 1234 aa9.43□□□□□ -0.9
USP48-209ENST00000487880 PLAURQ03405 335 aa9.43□□□□□ -0.9
USP48-209ENST00000487880 C1orf229Q6ZS94 237 aaPredicted RBP9.43□□□□□ -0.9
USP48-209ENST00000487880 ZFYVE28Q9HCC9 887 aa9.43□□□□□ -0.9
USP48-209ENST00000487880 DNAJB12Q9NXW2 375 aaKnown RBP9.43□□□□□ -0.9
USP48-209ENST00000487880 ZBTB42B2RXF5 422 aa9.42□□□□□ -0.9
USP48-209ENST00000487880 KIF4AO95239 1232 aa9.42□□□□□ -0.9
USP48-209ENST00000487880 ADH7P40394 386 aa9.42□□□□□ -0.9
USP48-209ENST00000487880 CSRNP1Q96S65 589 aa9.42□□□□□ -0.9
USP48-209ENST00000487880 DNAJC25Q9H1X3 360 aa9.42□□□□□ -0.9
USP48-209ENST00000487880 ELOA3CA0A087WX78 387 aaPredicted RBP9.41□□□□□ -0.9
USP48-209ENST00000487880 ELOA3DA6NLF2 546 aaPredicted RBP9.41□□□□□ -0.9
USP48-209ENST00000487880 EIF1AYO14602 144 aaKnown RBP9.41□□□□□ -0.9
USP48-209ENST00000487880 OIP5O43482 229 aa9.41□□□□□ -0.9
USP48-209ENST00000487880 ENOX2Q16206 610 aaKnown RBP9.41□□□□□ -0.9
USP48-209ENST00000487880 PCSK7Q16549 785 aa9.41□□□□□ -0.9
USP48-209ENST00000487880 ELOA3BQ3SY89 546 aa9.41□□□□□ -0.9
USP48-209ENST00000487880 COL13A1Q5TAT6 717 aaPredicted RBP9.41□□□□□ -0.9
USP48-209ENST00000487880 RGS22Q8NE09 1264 aa9.41□□□□□ -0.9
USP48-209ENST00000487880 ELOA3Q8NG57 546 aa9.41□□□□□ -0.9
USP48-209ENST00000487880 WHAMMQ8TF30 809 aa9.41□□□□□ -0.9
USP48-209ENST00000487880 PMEPA1Q969W9 287 aa9.41□□□□□ -0.9
USP48-209ENST00000487880 UBE2OQ9C0C9 1292 aaKnown RBP9.41□□□□□ -0.9
USP48-209ENST00000487880 SLC6A14Q9UN76 642 aa9.41□□□□□ -0.9
USP48-209ENST00000487880 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.41□□□□□ -0.9
USP48-209ENST00000487880 EREGO14944 169 aa9.4□□□□□ -0.9
USP48-209ENST00000487880 CPNE3O75131 537 aaKnown RBP9.4□□□□□ -0.9
USP48-209ENST00000487880 CELA2BP08218 269 aaPredicted RBP9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms