RNA–Protein interactions for RNA: ENST00000487428.1

PTPRE-209, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 3

Gene PTPRE, Length 325 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-209ENST00000487428 ZC3H4Q9UPT8 1303 aaKnown RBP8.4□□□□□ -1.06
PTPRE-209ENST00000487428 A0A0G2JLW4 131 aa8.4□□□□□ -1.06
PTPRE-209ENST00000487428 CTSWP56202 376 aa8.4□□□□□ -1.06
PTPRE-209ENST00000487428 MTX1Q13505 466 aa8.4□□□□□ -1.06
PTPRE-209ENST00000487428 CCDC152Q4G0S7 254 aa8.4□□□□□ -1.06
PTPRE-209ENST00000487428 UBE3BQ7Z3V4 1068 aa8.4□□□□□ -1.06
PTPRE-209ENST00000487428 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.4□□□□□ -1.06
PTPRE-209ENST00000487428 TTLL11Q8NHH1 800 aa8.4□□□□□ -1.06
PTPRE-209ENST00000487428 RBM17Q96I25 401 aaKnown RBP8.4□□□□□ -1.06
PTPRE-209ENST00000487428 BCL2L13Q9BXK5 485 aa8.4□□□□□ -1.06
PTPRE-209ENST00000487428 CHMP4BQ9H444 224 aaKnown RBP8.4□□□□□ -1.06
PTPRE-209ENST00000487428 DCAF8L1A6NGE4 600 aa8.39□□□□□ -1.07
PTPRE-209ENST00000487428 GNAI3P08754 354 aa8.39□□□□□ -1.07
PTPRE-209ENST00000487428 CHRNA5P30532 468 aa8.39□□□□□ -1.07
PTPRE-209ENST00000487428 FOXO4P98177 505 aa8.39□□□□□ -1.07
PTPRE-209ENST00000487428 GRAPQ13588 217 aa8.39□□□□□ -1.07
PTPRE-209ENST00000487428 SP8Q8IXZ3 490 aa8.39□□□□□ -1.07
PTPRE-209ENST00000487428 DZIP1LQ8IYY4 767 aaKnown RBP8.39□□□□□ -1.07
PTPRE-209ENST00000487428 SYNE4Q8N205 404 aa8.39□□□□□ -1.07
PTPRE-209ENST00000487428 GRAPLQ8TC17 118 aaPredicted RBP8.39□□□□□ -1.07
PTPRE-209ENST00000487428 RPGRQ92834 1020 aaKnown RBP8.39□□□□□ -1.07
PTPRE-209ENST00000487428 KAZALD1Q96I82 304 aa8.39□□□□□ -1.07
PTPRE-209ENST00000487428 PSMD1Q99460 953 aa8.39□□□□□ -1.07
PTPRE-209ENST00000487428 C9orf78Q9NZ63 289 aaPredicted RBP8.39□□□□□ -1.07
PTPRE-209ENST00000487428 FBXO3Q9UK99 471 aa8.39□□□□□ -1.07
PTPRE-209ENST00000487428 ZBTB22O15209 634 aa8.38□□□□□ -1.07
PTPRE-209ENST00000487428 NBPF7P0C2Y1 421 aaPredicted RBP8.38□□□□□ -1.07
PTPRE-209ENST00000487428 HCLS1P14317 486 aaPredicted RBP8.38□□□□□ -1.07
PTPRE-209ENST00000487428 YBX3P16989 372 aaKnown RBP eCLIP8.38□□□□□ -1.07
PTPRE-209ENST00000487428 AAMPQ13685 434 aa8.38□□□□□ -1.07
PTPRE-209ENST00000487428 PRPF40BQ6NWY9 871 aaKnown RBP8.38□□□□□ -1.07
PTPRE-209ENST00000487428 SLC4A10Q6U841 1118 aa8.38□□□□□ -1.07
PTPRE-209ENST00000487428 C3orf67Q6ZVT6 689 aa8.38□□□□□ -1.07
PTPRE-209ENST00000487428 DDX46Q7L014 1031 aaKnown RBP8.38□□□□□ -1.07
PTPRE-209ENST00000487428 RTKN2Q8IZC4 609 aa8.38□□□□□ -1.07
PTPRE-209ENST00000487428 CDC5LQ99459 802 aaKnown RBP8.38□□□□□ -1.07
PTPRE-209ENST00000487428 RTFDC1Q9BY42 306 aaPredicted RBP8.38□□□□□ -1.07
PTPRE-209ENST00000487428 PODXL2Q9NZ53 605 aa8.38□□□□□ -1.07
PTPRE-209ENST00000487428 ATP6V0A2Q9Y487 856 aa8.38□□□□□ -1.07
PTPRE-209ENST00000487428 TIAM2Q8IVF5 1701 aa8.37□□□□□ -1.07
PTPRE-209ENST00000487428 COL4A1P02462 1669 aa8.37□□□□□ -1.07
PTPRE-209ENST00000487428 DUOX1Q9NRD9 1551 aa8.37□□□□□ -1.07
PTPRE-209ENST00000487428 ZBTB7BO15156 539 aaPredicted RBP8.37□□□□□ -1.07
PTPRE-209ENST00000487428 RPS8P62241 208 aaKnown RBP8.37□□□□□ -1.07
PTPRE-209ENST00000487428 BSDC1Q9NW68 430 aaPredicted RBP8.37□□□□□ -1.07
PTPRE-209ENST00000487428 DDX19BQ9UMR2 479 aa8.37□□□□□ -1.07
PTPRE-209ENST00000487428 FAM177BA6PVY3 158 aa8.36□□□□□ -1.07
PTPRE-209ENST00000487428 UBTFL1P0CB47 393 aaPredicted RBP8.36□□□□□ -1.07
PTPRE-209ENST00000487428 CCDC93Q567U6 631 aa8.36□□□□□ -1.07
PTPRE-209ENST00000487428 FTSJ3Q8IY81 847 aaKnown RBP8.36□□□□□ -1.07
PTPRE-209ENST00000487428 TMEM57Q8N5G2 664 aa8.36□□□□□ -1.07
PTPRE-209ENST00000487428 ZNF622Q969S3 477 aaKnown RBP eCLIP8.36□□□□□ -1.07
PTPRE-209ENST00000487428 BCS1LQ9Y276 419 aa8.36□□□□□ -1.07
PTPRE-209ENST00000487428 ZNF646O15015 1829 aaPredicted RBP8.36□□□□□ -1.07
PTPRE-209ENST00000487428 ARAP2Q8WZ64 1704 aa8.35□□□□□ -1.07
PTPRE-209ENST00000487428 PPEF1O14829 653 aaPredicted RBP8.35□□□□□ -1.07
PTPRE-209ENST00000487428 RLBP1P12271 317 aa8.35□□□□□ -1.07
PTPRE-209ENST00000487428 FKBP4Q02790 459 aaKnown RBP eCLIP8.35□□□□□ -1.07
PTPRE-209ENST00000487428 MVPQ14764 893 aaKnown RBP8.35□□□□□ -1.07
PTPRE-209ENST00000487428 GPR162Q16538 588 aa8.35□□□□□ -1.07
PTPRE-209ENST00000487428 ANKRD18AQ8IVF6 992 aa8.35□□□□□ -1.07
PTPRE-209ENST00000487428 KLHL34Q8N239 644 aa8.35□□□□□ -1.07
PTPRE-209ENST00000487428 CCDC24Q8N4L8 307 aa8.35□□□□□ -1.07
PTPRE-209ENST00000487428 ANKRD44Q8N8A2 993 aa8.35□□□□□ -1.07
PTPRE-209ENST00000487428 FRAT1Q92837 279 aaPredicted RBP8.35□□□□□ -1.07
PTPRE-209ENST00000487428 SUCLG2Q96I99 432 aa8.35□□□□□ -1.07
PTPRE-209ENST00000487428 GREM2Q9H772 168 aa8.35□□□□□ -1.07
PTPRE-209ENST00000487428 SCN4AP35499 1836 aa8.35□□□□□ -1.07
PTPRE-209ENST00000487428 ZNF609O15014 1411 aa8.35□□□□□ -1.07
PTPRE-209ENST00000487428 MYH13Q9UKX3 1938 aa8.35□□□□□ -1.07
PTPRE-209ENST00000487428 ANKRD18BA2A2Z9 1011 aa8.34□□□□□ -1.07
PTPRE-209ENST00000487428 NFKBIEO00221 500 aa8.34□□□□□ -1.07
PTPRE-209ENST00000487428 GNAI2P04899 355 aa8.34□□□□□ -1.07
PTPRE-209ENST00000487428 ITGA6P23229 1130 aa8.34□□□□□ -1.07
PTPRE-209ENST00000487428 RFX5P48382 616 aaPredicted RBP8.34□□□□□ -1.07
PTPRE-209ENST00000487428 IFIT5Q13325 482 aaKnown RBP8.34□□□□□ -1.07
PTPRE-209ENST00000487428 EPHA10Q5JZY3 1008 aa8.34□□□□□ -1.07
PTPRE-209ENST00000487428 LMBR1LQ6UX01 489 aa8.34□□□□□ -1.07
PTPRE-209ENST00000487428 C15orf52Q6ZUT6 534 aaKnown RBP8.34□□□□□ -1.07
PTPRE-209ENST00000487428 SUPT20HQ8NEM7 779 aa8.34□□□□□ -1.07
PTPRE-209ENST00000487428 CELF1Q92879 486 aaKnown RBP8.34□□□□□ -1.07
PTPRE-209ENST00000487428 MEIS3Q99687 375 aa8.34□□□□□ -1.07
PTPRE-209ENST00000487428 TMX4Q9H1E5 349 aaPredicted RBP8.34□□□□□ -1.07
PTPRE-209ENST00000487428 BICC1Q9H694 974 aaKnown RBP8.34□□□□□ -1.07
PTPRE-209ENST00000487428 COPRSQ9NQ92 184 aa8.34□□□□□ -1.07
PTPRE-209ENST00000487428 ZBTB40Q9NUA8 1239 aa8.34□□□□□ -1.07
PTPRE-209ENST00000487428 SCN9AQ15858 1988 aa8.33□□□□□ -1.08
PTPRE-209ENST00000487428 XDHP47989 1333 aa8.33□□□□□ -1.08
PTPRE-209ENST00000487428 C21orf2O43822 256 aa8.33□□□□□ -1.08
PTPRE-209ENST00000487428 CIAO1O76071 339 aa8.33□□□□□ -1.08
PTPRE-209ENST00000487428 LMNB1P20700 586 aa8.33□□□□□ -1.08
PTPRE-209ENST00000487428 IGHMBP2P38935 993 aaKnown RBP8.33□□□□□ -1.08
PTPRE-209ENST00000487428 RRP1P56182 461 aaKnown RBP8.33□□□□□ -1.08
PTPRE-209ENST00000487428 CCDC57Q2TAC2 916 aa8.33□□□□□ -1.08
PTPRE-209ENST00000487428 FAM161AQ3B820 660 aa8.33□□□□□ -1.08
PTPRE-209ENST00000487428 WDR90Q96KV7 1748 aa8.33□□□□□ -1.08
PTPRE-209ENST00000487428 ANKRD2Q9GZV1 360 aa8.33□□□□□ -1.08
PTPRE-209ENST00000487428 TAOK3Q9H2K8 898 aa8.33□□□□□ -1.08
PTPRE-209ENST00000487428 SEC31BQ9NQW1 1179 aa8.33□□□□□ -1.08
PTPRE-209ENST00000487428 MROH5Q6ZUA9 1318 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms