RNA–Protein interactions for RNA: ENST00000487245.5

HLA-C-208, Transcript of major histocompatibility complex, class I, C, humanhuman

Gene HLA-C, Length 1,880 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-C-208ENST00000487245 NUP188Q5SRE5 1749 aa31.22■■■□□ 2.59
HLA-C-208ENST00000487245 FOXO4P98177 505 aa31.21■■■□□ 2.59
HLA-C-208ENST00000487245 LMBR1LQ6UX01 489 aa31.21■■■□□ 2.59
HLA-C-208ENST00000487245 JCADQ9P266 1359 aa31.21■■■□□ 2.59
HLA-C-208ENST00000487245 DBNLQ9UJU6 430 aaKnown RBP31.21■■■□□ 2.59
HLA-C-208ENST00000487245 MED23Q9ULK4 1368 aa31.21■■■□□ 2.59
HLA-C-208ENST00000487245 NOL7Q9UMY1 257 aaKnown RBP31.21■■■□□ 2.59
HLA-C-208ENST00000487245 GADD45BO75293 160 aaPredicted RBP31.21■■■□□ 2.59
HLA-C-208ENST00000487245 PDIA4P13667 645 aaKnown RBP31.21■■■□□ 2.59
HLA-C-208ENST00000487245 DDX54Q8TDD1 881 aaKnown RBP31.21■■■□□ 2.59
HLA-C-208ENST00000487245 ZNF335Q9H4Z2 1342 aaPredicted RBP31.2■■■□□ 2.58
HLA-C-208ENST00000487245 F13A1P00488 732 aa31.2■■■□□ 2.58
HLA-C-208ENST00000487245 TTLL7Q6ZT98 887 aa31.2■■■□□ 2.58
HLA-C-208ENST00000487245 TICAM2Q86XR7 235 aa31.2■■■□□ 2.58
HLA-C-208ENST00000487245 SHANK3Q9BYB0 1731 aa31.2■■■□□ 2.58
HLA-C-208ENST00000487245 ADCK5Q3MIX3 580 aa31.19■■■□□ 2.58
HLA-C-208ENST00000487245 ALDH8A1Q9H2A2 487 aaPredicted RBP31.19■■■□□ 2.58
HLA-C-208ENST00000487245 GPR108Q9NPR9 543 aa31.19■■■□□ 2.58
HLA-C-208ENST00000487245 A0A0D9SFI3 127 aa31.18■■■□□ 2.58
HLA-C-208ENST00000487245 A1BGP04217 495 aa31.18■■■□□ 2.58
HLA-C-208ENST00000487245 MSNP26038 577 aaKnown RBP31.18■■■□□ 2.58
HLA-C-208ENST00000487245 HMG20BQ9P0W2 317 aa31.18■■■□□ 2.58
HLA-C-208ENST00000487245 SLC27A2O14975 620 aa31.18■■■□□ 2.58
HLA-C-208ENST00000487245 LETM1O95202 739 aaPredicted RBP31.18■■■□□ 2.58
HLA-C-208ENST00000487245 STRN4Q9NRL3 753 aa31.18■■■□□ 2.58
HLA-C-208ENST00000487245 LARGE1O95461 756 aa31.17■■■□□ 2.58
HLA-C-208ENST00000487245 MCM5P33992 734 aa31.17■■■□□ 2.58
HLA-C-208ENST00000487245 TEX13AQ9BXU3 409 aaPredicted RBP31.17■■■□□ 2.58
HLA-C-208ENST00000487245 TSGA10IPQ3SY00 556 aa31.16■■■□□ 2.58
HLA-C-208ENST00000487245 HAUS7Q99871 368 aa31.16■■■□□ 2.58
HLA-C-208ENST00000487245 NHSL1Q5SYE7 1610 aa31.16■■■□□ 2.58
HLA-C-208ENST00000487245 UBE2HP62256 183 aa31.16■■■□□ 2.58
HLA-C-208ENST00000487245 CCDC183Q5T5S1 534 aa31.16■■■□□ 2.58
HLA-C-208ENST00000487245 FAM184AQ8NB25 1140 aa31.16■■■□□ 2.58
HLA-C-208ENST00000487245 ATG3Q9NT62 314 aa31.16■■■□□ 2.58
HLA-C-208ENST00000487245 CPA1P15085 419 aa31.15■■■□□ 2.58
HLA-C-208ENST00000487245 ANKRD1Q15327 319 aa31.15■■■□□ 2.58
HLA-C-208ENST00000487245 CSPP1Q1MSJ5 1256 aa31.15■■■□□ 2.58
HLA-C-208ENST00000487245 GDPD2Q9HCC8 539 aa31.15■■■□□ 2.58
HLA-C-208ENST00000487245 ZNF500O60304 480 aaPredicted RBP31.14■■■□□ 2.58
HLA-C-208ENST00000487245 UVSSAQ2YD98 709 aa31.14■■■□□ 2.58
HLA-C-208ENST00000487245 TMOD3Q9NYL9 352 aa31.14■■■□□ 2.58
HLA-C-208ENST00000487245 CNPY2Q9Y2B0 182 aa31.14■■■□□ 2.58
HLA-C-208ENST00000487245 GJB2P29033 226 aa31.14■■■□□ 2.58
HLA-C-208ENST00000487245 IL15P40933 162 aaPredicted RBP31.14■■■□□ 2.58
HLA-C-208ENST00000487245 OFD1O75665 1012 aa31.13■■■□□ 2.57
HLA-C-208ENST00000487245 CCDC83Q8IWF9 413 aa31.13■■■□□ 2.57
HLA-C-208ENST00000487245 DBNDD2Q9BQY9 259 aa31.13■■■□□ 2.57
HLA-C-208ENST00000487245 CCDC39Q9UFE4 941 aa31.13■■■□□ 2.57
HLA-C-208ENST00000487245 MTMR6Q9Y217 621 aa31.13■■■□□ 2.57
HLA-C-208ENST00000487245 CHMP3Q9Y3E7 222 aa31.13■■■□□ 2.57
HLA-C-208ENST00000487245 TJP1Q07157 1748 aa31.13■■■□□ 2.57
HLA-C-208ENST00000487245 VSIG10Q8N0Z9 540 aa31.12■■■□□ 2.57
HLA-C-208ENST00000487245 TAF5LO75529 589 aa31.12■■■□□ 2.57
HLA-C-208ENST00000487245 ST3GAL1Q11201 340 aa31.12■■■□□ 2.57
HLA-C-208ENST00000487245 KRT32Q14532 448 aa31.12■■■□□ 2.57
HLA-C-208ENST00000487245 USPL1Q5W0Q7 1092 aa31.12■■■□□ 2.57
HLA-C-208ENST00000487245 BLOC1S2Q6QNY1 142 aa31.11■■■□□ 2.57
HLA-C-208ENST00000487245 ZBTB3Q9H5J0 574 aa31.11■■■□□ 2.57
HLA-C-208ENST00000487245 CIAO1O76071 339 aa31.1■■■□□ 2.57
HLA-C-208ENST00000487245 ME3Q16798 604 aa31.1■■■□□ 2.57
HLA-C-208ENST00000487245 ATG9AQ7Z3C6 839 aa31.1■■■□□ 2.57
HLA-C-208ENST00000487245 LARP6Q9BRS8 491 aaKnown RBP31.1■■■□□ 2.57
HLA-C-208ENST00000487245 ISCA1Q9BUE6 129 aa31.1■■■□□ 2.57
HLA-C-208ENST00000487245 EIF2AK3Q9NZJ5 1116 aaKnown RBP31.1■■■□□ 2.57
HLA-C-208ENST00000487245 ZKSCAN5Q9Y2L8 839 aa31.1■■■□□ 2.57
HLA-C-208ENST00000487245 TRIM28Q13263 835 aaKnown RBP31.09■■■□□ 2.57
HLA-C-208ENST00000487245 FOXD4L6Q3SYB3 417 aaPredicted RBP31.09■■■□□ 2.57
HLA-C-208ENST00000487245 FOXD4L3Q6VB84 417 aaPredicted RBP31.09■■■□□ 2.57
HLA-C-208ENST00000487245 TPM2P07951 284 aa31.08■■■□□ 2.57
HLA-C-208ENST00000487245 PDZRN4Q6ZMN7 1036 aaPredicted RBP31.08■■■□□ 2.57
HLA-C-208ENST00000487245 U3KPZ7 1027 aaPredicted RBP31.08■■■□□ 2.57
HLA-C-208ENST00000487245 EYA2O00167 538 aa31.08■■■□□ 2.57
HLA-C-208ENST00000487245 TERF1P54274 439 aa31.08■■■□□ 2.57
HLA-C-208ENST00000487245 TCIRG1Q13488 830 aa31.08■■■□□ 2.57
HLA-C-208ENST00000487245 ZNF589Q86UQ0 364 aaPredicted RBP31.08■■■□□ 2.57
HLA-C-208ENST00000487245 RPS6KB1P23443 525 aa31.07■■■□□ 2.56
HLA-C-208ENST00000487245 MCMDC2Q4G0Z9 681 aa31.07■■■□□ 2.56
HLA-C-208ENST00000487245 KBTBD3Q8NAB2 608 aa31.07■■■□□ 2.56
HLA-C-208ENST00000487245 EDC3Q96F86 508 aaKnown RBP31.07■■■□□ 2.56
HLA-C-208ENST00000487245 DNAJC2Q99543 621 aaKnown RBP31.07■■■□□ 2.56
HLA-C-208ENST00000487245 FBXO3Q9UK99 471 aa31.07■■■□□ 2.56
HLA-C-208ENST00000487245 TOGARAM1Q9Y4F4 1720 aa31.07■■■□□ 2.56
HLA-C-208ENST00000487245 TPCN1Q9ULQ1 816 aa31.06■■■□□ 2.56
HLA-C-208ENST00000487245 RNF214Q8ND24 703 aa31.06■■■□□ 2.56
HLA-C-208ENST00000487245 PALLDQ8WX93 1383 aa31.05■■■□□ 2.56
HLA-C-208ENST00000487245 SH3TC1Q8TE82 1336 aa31.04■■■□□ 2.56
HLA-C-208ENST00000487245 STARD3NLO95772 234 aa31.04■■■□□ 2.56
HLA-C-208ENST00000487245 KIF6Q6ZMV9 814 aa31.04■■■□□ 2.56
HLA-C-208ENST00000487245 NEUROD6Q96NK8 337 aa31.04■■■□□ 2.56
HLA-C-208ENST00000487245 PDCP20941 246 aa31.03■■■□□ 2.56
HLA-C-208ENST00000487245 ZNF609O15014 1411 aa31.02■■■□□ 2.56
HLA-C-208ENST00000487245 PPIL4Q8WUA2 492 aaKnown RBP eCLIP31.02■■■□□ 2.56
HLA-C-208ENST00000487245 HELLSQ9NRZ9 838 aa31.02■■■□□ 2.56
HLA-C-208ENST00000487245 PIGBQ92521 554 aa31.01■■■□□ 2.55
HLA-C-208ENST00000487245 PLA2G12BQ9BX93 195 aa31.01■■■□□ 2.55
HLA-C-208ENST00000487245 PAG1Q9NWQ8 432 aa31.01■■■□□ 2.55
HLA-C-208ENST00000487245 FIBPO43427 364 aa31■■■□□ 2.55
HLA-C-208ENST00000487245 PCCAP05165 728 aaPredicted RBP31■■■□□ 2.55
HLA-C-208ENST00000487245 DNM1Q05193 864 aaKnown RBP30.99■■■□□ 2.55
Retrieved 100 of 20,778 RNA–protein pairs in 283 ms