RNA–Protein interactions for RNA: ENST00000487062.1

SF3A3-206, Transcript of splicing factor 3a subunit 3, humanhuman

TSL 2

Gene SF3A3, Length 775 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-206ENST00000487062 CHMP3Q9Y3E7 222 aa8.65□□□□□ -1.02
SF3A3-206ENST00000487062 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.64□□□□□ -1.03
SF3A3-206ENST00000487062 IFIT2P09913 472 aaKnown RBP8.64□□□□□ -1.03
SF3A3-206ENST00000487062 GSPT1P15170 499 aaKnown RBP8.64□□□□□ -1.03
SF3A3-206ENST00000487062 FOXO4P98177 505 aa8.64□□□□□ -1.03
SF3A3-206ENST00000487062 PARP10Q53GL7 1025 aa8.64□□□□□ -1.03
SF3A3-206ENST00000487062 NLRP10Q86W26 655 aa8.64□□□□□ -1.03
SF3A3-206ENST00000487062 ZNF34Q8IZ26 560 aa8.64□□□□□ -1.03
SF3A3-206ENST00000487062 LINC00116Q8NCU8 138 aa8.64□□□□□ -1.03
SF3A3-206ENST00000487062 OTUD7AQ8TE49 926 aaPredicted RBP8.64□□□□□ -1.03
SF3A3-206ENST00000487062 ZFP91Q96JP5 570 aaPredicted RBP8.64□□□□□ -1.03
SF3A3-206ENST00000487062 PLA2G12BQ9BX93 195 aa8.64□□□□□ -1.03
SF3A3-206ENST00000487062 TRMT112Q9UI30 125 aaKnown RBP8.64□□□□□ -1.03
SF3A3-206ENST00000487062 CCNL1Q9UK58 526 aaPredicted RBP8.64□□□□□ -1.03
SF3A3-206ENST00000487062 SCN7AQ01118 1682 aa8.63□□□□□ -1.03
SF3A3-206ENST00000487062 TTC41PQ6P2S7 1318 aa8.63□□□□□ -1.03
SF3A3-206ENST00000487062 ERC2O15083 957 aa8.63□□□□□ -1.03
SF3A3-206ENST00000487062 SDSP20132 328 aa8.63□□□□□ -1.03
SF3A3-206ENST00000487062 GPTP24298 496 aa8.63□□□□□ -1.03
SF3A3-206ENST00000487062 RFX5P48382 616 aaPredicted RBP8.63□□□□□ -1.03
SF3A3-206ENST00000487062 MFAP1P55081 439 aaKnown RBP8.63□□□□□ -1.03
SF3A3-206ENST00000487062 PTPN12Q05209 780 aaKnown RBP8.63□□□□□ -1.03
SF3A3-206ENST00000487062 RTL5Q5HYW3 569 aaPredicted RBP8.63□□□□□ -1.03
SF3A3-206ENST00000487062 FAM182BQ5T319 152 aa8.63□□□□□ -1.03
SF3A3-206ENST00000487062 CLEC4GQ6UXB4 293 aa8.63□□□□□ -1.03
SF3A3-206ENST00000487062 AK7Q96M32 723 aa8.63□□□□□ -1.03
SF3A3-206ENST00000487062 IPO9Q96P70 1041 aaKnown RBP8.63□□□□□ -1.03
SF3A3-206ENST00000487062 SIL1Q9H173 461 aa8.63□□□□□ -1.03
SF3A3-206ENST00000487062 LAMB2P55268 1798 aa8.63□□□□□ -1.03
SF3A3-206ENST00000487062 C4BP0C0L5 1744 aa8.63□□□□□ -1.03
SF3A3-206ENST00000487062 USP42Q9H9J4 1324 aaKnown RBP8.62□□□□□ -1.03
SF3A3-206ENST00000487062 TRIM6-TRIM34B2RNG4 842 aa8.62□□□□□ -1.03
SF3A3-206ENST00000487062 PDE8AO60658 829 aa8.62□□□□□ -1.03
SF3A3-206ENST00000487062 RPS6KA4O75676 772 aa8.62□□□□□ -1.03
SF3A3-206ENST00000487062 GLRX3O76003 335 aaKnown RBP8.62□□□□□ -1.03
SF3A3-206ENST00000487062 SASH1O94885 1247 aa8.62□□□□□ -1.03
SF3A3-206ENST00000487062 CAMTA2O94983 1202 aa8.62□□□□□ -1.03
SF3A3-206ENST00000487062 SEC24BO95487 1268 aa8.62□□□□□ -1.03
SF3A3-206ENST00000487062 CCDC57Q2TAC2 916 aa8.62□□□□□ -1.03
SF3A3-206ENST00000487062 TBC1D9Q6ZT07 1266 aa8.62□□□□□ -1.03
SF3A3-206ENST00000487062 AACSQ86V21 672 aa8.62□□□□□ -1.03
SF3A3-206ENST00000487062 NUTM1Q86Y26 1132 aa8.62□□□□□ -1.03
SF3A3-206ENST00000487062 FAM212AQ96EL1 285 aa8.62□□□□□ -1.03
SF3A3-206ENST00000487062 FAM89AQ96GI7 184 aa8.62□□□□□ -1.03
SF3A3-206ENST00000487062 STK24Q9Y6E0 443 aa8.62□□□□□ -1.03
SF3A3-206ENST00000487062 IRS4O14654 1257 aaPredicted RBP8.61□□□□□ -1.03
SF3A3-206ENST00000487062 CIAO1O76071 339 aa8.61□□□□□ -1.03
SF3A3-206ENST00000487062 CSF1RP07333 972 aa8.61□□□□□ -1.03
SF3A3-206ENST00000487062 IL15P40933 162 aaPredicted RBP8.61□□□□□ -1.03
SF3A3-206ENST00000487062 MNX1P50219 401 aaPredicted RBP8.61□□□□□ -1.03
SF3A3-206ENST00000487062 IFIT5Q13325 482 aaKnown RBP8.61□□□□□ -1.03
SF3A3-206ENST00000487062 TAF7LQ5H9L4 462 aa8.61□□□□□ -1.03
SF3A3-206ENST00000487062 PTF1AQ7RTS3 328 aa8.61□□□□□ -1.03
SF3A3-206ENST00000487062 CNTROBQ8N137 903 aa8.61□□□□□ -1.03
SF3A3-206ENST00000487062 RILPL2Q969X0 211 aa8.61□□□□□ -1.03
SF3A3-206ENST00000487062 TBC1D32Q96NH3 1257 aa8.61□□□□□ -1.03
SF3A3-206ENST00000487062 UTP14AQ9BVJ6 771 aaKnown RBP8.61□□□□□ -1.03
SF3A3-206ENST00000487062 C22orf23Q9BZE7 217 aa8.61□□□□□ -1.03
SF3A3-206ENST00000487062 ECHDC1Q9NTX5 307 aa8.61□□□□□ -1.03
SF3A3-206ENST00000487062 RTCBQ9Y3I0 505 aaKnown RBP8.61□□□□□ -1.03
SF3A3-206ENST00000487062 DDX60Q8IY21 1712 aaKnown RBP8.6□□□□□ -1.03
SF3A3-206ENST00000487062 UBN2Q6ZU65 1347 aa8.6□□□□□ -1.03
SF3A3-206ENST00000487062 SH3TC1Q8TE82 1336 aa8.6□□□□□ -1.03
SF3A3-206ENST00000487062 ANKRD18BA2A2Z9 1011 aa8.6□□□□□ -1.03
SF3A3-206ENST00000487062 EYA2O00167 538 aa8.6□□□□□ -1.03
SF3A3-206ENST00000487062 GNPATO15228 680 aa8.6□□□□□ -1.03
SF3A3-206ENST00000487062 ZPR1O75312 459 aa8.6□□□□□ -1.03
SF3A3-206ENST00000487062 CTSWP56202 376 aa8.6□□□□□ -1.03
SF3A3-206ENST00000487062 SLC27A3Q5K4L6 730 aa8.6□□□□□ -1.03
SF3A3-206ENST00000487062 KLHDC4Q8TBB5 520 aa8.6□□□□□ -1.03
SF3A3-206ENST00000487062 GPR108Q9NPR9 543 aa8.6□□□□□ -1.03
SF3A3-206ENST00000487062 NARFQ9UHQ1 456 aa8.6□□□□□ -1.03
SF3A3-206ENST00000487062 NIP7Q9Y221 180 aaKnown RBP eCLIP8.6□□□□□ -1.03
SF3A3-206ENST00000487062 REC8O95072 547 aa8.59□□□□□ -1.03
SF3A3-206ENST00000487062 RXRBP28702 533 aa8.59□□□□□ -1.03
SF3A3-206ENST00000487062 KCNQ4P56696 695 aa8.59□□□□□ -1.03
SF3A3-206ENST00000487062 TFCP2Q12800 502 aa8.59□□□□□ -1.03
SF3A3-206ENST00000487062 BECN1Q14457 450 aa8.59□□□□□ -1.03
SF3A3-206ENST00000487062 TNNI3KQ59H18 835 aa8.59□□□□□ -1.03
SF3A3-206ENST00000487062 SUSD4Q5VX71 490 aa8.59□□□□□ -1.03
SF3A3-206ENST00000487062 TSHZ3Q63HK5 1081 aa8.59□□□□□ -1.03
SF3A3-206ENST00000487062 TTLL11Q8NHH1 800 aa8.59□□□□□ -1.03
SF3A3-206ENST00000487062 PI4K2BQ8TCG2 481 aa8.59□□□□□ -1.03
SF3A3-206ENST00000487062 EAF2Q96CJ1 260 aaPredicted RBP8.59□□□□□ -1.03
SF3A3-206ENST00000487062 CCDC8Q9H0W5 538 aaPredicted RBP8.59□□□□□ -1.03
SF3A3-206ENST00000487062 CEP126Q9P2H0 1117 aa8.59□□□□□ -1.03
SF3A3-206ENST00000487062 AKAP2Q9Y2D5 859 aa8.59□□□□□ -1.03
SF3A3-206ENST00000487062 FPGT-TNNI3KV9GXZ4 949 aa8.59□□□□□ -1.03
SF3A3-206ENST00000487062 C4AP0C0L4 1744 aa8.59□□□□□ -1.03
SF3A3-206ENST00000487062 CASZ1Q86V15 1759 aa8.58□□□□□ -1.04
SF3A3-206ENST00000487062 UBR3Q6ZT12 1888 aa8.58□□□□□ -1.04
SF3A3-206ENST00000487062 COL24A1Q17RW2 1714 aa8.58□□□□□ -1.04
SF3A3-206ENST00000487062 TRIM37O94972 964 aa8.58□□□□□ -1.04
SF3A3-206ENST00000487062 TRAPPC3LQ5T215 181 aa8.58□□□□□ -1.04
SF3A3-206ENST00000487062 ATG9AQ7Z3C6 839 aa8.58□□□□□ -1.04
SF3A3-206ENST00000487062 FBXO41Q8TF61 875 aa8.58□□□□□ -1.04
SF3A3-206ENST00000487062 NYXQ9GZU5 481 aa8.58□□□□□ -1.04
SF3A3-206ENST00000487062 FAM177BA6PVY3 158 aa8.57□□□□□ -1.04
SF3A3-206ENST00000487062 HIP1O00291 1037 aa8.57□□□□□ -1.04
SF3A3-206ENST00000487062 NTSR2O95665 410 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 102.5 ms