RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP18.9■□□□□ 0.62
COL7A1-210ENST00000487017 NAA15Q9BXJ9 866 aaKnown RBP18.9■□□□□ 0.62
COL7A1-210ENST00000487017 ZPR1O75312 459 aa18.9■□□□□ 0.62
COL7A1-210ENST00000487017 VAMP4O75379 141 aa18.9■□□□□ 0.62
COL7A1-210ENST00000487017 ZFYP08048 801 aaPredicted RBP18.89■□□□□ 0.62
COL7A1-210ENST00000487017 DESP17661 470 aa18.89■□□□□ 0.62
COL7A1-210ENST00000487017 PPIP5K1Q6PFW1 1433 aa18.89■□□□□ 0.62
COL7A1-210ENST00000487017 SEC24BO95487 1268 aa18.89■□□□□ 0.61
COL7A1-210ENST00000487017 RBM25P49756 843 aaKnown RBP18.89■□□□□ 0.61
COL7A1-210ENST00000487017 MCMDC2Q4G0Z9 681 aa18.89■□□□□ 0.61
COL7A1-210ENST00000487017 Q6ZUG5 572 aa18.89■□□□□ 0.61
COL7A1-210ENST00000487017 LRRC2Q9BYS8 371 aa18.89■□□□□ 0.61
COL7A1-210ENST00000487017 CCDC113Q9H0I3 377 aa18.89■□□□□ 0.61
COL7A1-210ENST00000487017 TMOD2Q9NZR1 351 aa18.89■□□□□ 0.61
COL7A1-210ENST00000487017 MAP2K1Q02750 393 aaPredicted RBP18.89■□□□□ 0.61
COL7A1-210ENST00000487017 FAM107BQ9H098 131 aa18.89■□□□□ 0.61
COL7A1-210ENST00000487017 ANKRD24Q8TF21 1146 aa18.89■□□□□ 0.61
COL7A1-210ENST00000487017 CCDC96Q2M329 555 aa18.88■□□□□ 0.61
COL7A1-210ENST00000487017 UBE2Q2Q8WVN8 375 aa18.88■□□□□ 0.61
COL7A1-210ENST00000487017 JARID2Q92833 1246 aaPredicted RBP18.88■□□□□ 0.61
COL7A1-210ENST00000487017 DNAJC25Q9H1X3 360 aa18.88■□□□□ 0.61
COL7A1-210ENST00000487017 TTC41PQ6P2S7 1318 aa18.88■□□□□ 0.61
COL7A1-210ENST00000487017 MICALCLQ6ZW33 695 aa18.88■□□□□ 0.61
COL7A1-210ENST00000487017 PLEKHM2Q8IWE5 1019 aa18.88■□□□□ 0.61
COL7A1-210ENST00000487017 UQCRFS1P1P0C7P4 283 aa18.88■□□□□ 0.61
COL7A1-210ENST00000487017 CTR9Q6PD62 1173 aa18.88■□□□□ 0.61
COL7A1-210ENST00000487017 CCDC97Q96F63 343 aaPredicted RBP18.88■□□□□ 0.61
COL7A1-210ENST00000487017 ARHGEF12Q9NZN5 1544 aa18.87■□□□□ 0.61
COL7A1-210ENST00000487017 UBA7P41226 1012 aa18.87■□□□□ 0.61
COL7A1-210ENST00000487017 KRT222Q8N1A0 295 aa18.87■□□□□ 0.61
COL7A1-210ENST00000487017 PUS7Q96PZ0 661 aaKnown RBP18.87■□□□□ 0.61
COL7A1-210ENST00000487017 ALG1Q9BT22 464 aa18.87■□□□□ 0.61
COL7A1-210ENST00000487017 GRM8O00222 908 aa18.87■□□□□ 0.61
COL7A1-210ENST00000487017 SF3B2Q13435 895 aaKnown RBP18.87■□□□□ 0.61
COL7A1-210ENST00000487017 EHBP1Q8NDI1 1231 aa18.87■□□□□ 0.61
COL7A1-210ENST00000487017 INTS4Q96HW7 963 aaKnown RBP18.87■□□□□ 0.61
COL7A1-210ENST00000487017 POLKQ9UBT6 870 aa18.87■□□□□ 0.61
COL7A1-210ENST00000487017 N4BP3O15049 544 aa18.87■□□□□ 0.61
COL7A1-210ENST00000487017 CFAP43Q8NDM7 1665 aa18.87■□□□□ 0.61
COL7A1-210ENST00000487017 NMIQ13287 307 aaPredicted RBP18.87■□□□□ 0.61
COL7A1-210ENST00000487017 EIF4A2Q14240 407 aaKnown RBP18.87■□□□□ 0.61
COL7A1-210ENST00000487017 CCDC40Q4G0X9 1142 aa18.87■□□□□ 0.61
COL7A1-210ENST00000487017 SYCP2Q9BX26 1530 aa18.87■□□□□ 0.61
COL7A1-210ENST00000487017 INCENPQ9NQS7 918 aa18.87■□□□□ 0.61
COL7A1-210ENST00000487017 RMND1Q9NWS8 449 aa18.87■□□□□ 0.61
COL7A1-210ENST00000487017 ZNF608Q9ULD9 1512 aaPredicted RBP18.86■□□□□ 0.61
COL7A1-210ENST00000487017 ZBTB43O43298 467 aa18.86■□□□□ 0.61
COL7A1-210ENST00000487017 PDE4BQ07343 736 aa18.86■□□□□ 0.61
COL7A1-210ENST00000487017 ZGPATQ8N5A5 531 aaKnown RBP18.86■□□□□ 0.61
COL7A1-210ENST00000487017 AOPEPQ8N6M6 819 aa18.86■□□□□ 0.61
COL7A1-210ENST00000487017 TSPYL6Q8N831 410 aa18.86■□□□□ 0.61
COL7A1-210ENST00000487017 GOPCQ9HD26 462 aa18.86■□□□□ 0.61
COL7A1-210ENST00000487017 AK2P54819 239 aa18.86■□□□□ 0.61
COL7A1-210ENST00000487017 CHMP4BP1P59074 171 aa18.86■□□□□ 0.61
COL7A1-210ENST00000487017 KSR2Q6VAB6 950 aa18.86■□□□□ 0.61
COL7A1-210ENST00000487017 KRT28Q7Z3Y7 464 aa18.86■□□□□ 0.61
COL7A1-210ENST00000487017 CTAGE1Q96RT6 745 aa18.86■□□□□ 0.61
COL7A1-210ENST00000487017 TTC12Q9H892 705 aaPredicted RBP18.86■□□□□ 0.61
COL7A1-210ENST00000487017 KAT14Q9H8E8 782 aa18.86■□□□□ 0.61
COL7A1-210ENST00000487017 TYRO3Q06418 890 aa18.86■□□□□ 0.61
COL7A1-210ENST00000487017 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP18.86■□□□□ 0.61
COL7A1-210ENST00000487017 SLF2Q8IX21 1173 aa18.86■□□□□ 0.61
COL7A1-210ENST00000487017 NUP153P49790 1475 aaKnown RBP18.86■□□□□ 0.61
COL7A1-210ENST00000487017 PLCH2O75038 1416 aa18.86■□□□□ 0.61
COL7A1-210ENST00000487017 WTAPQ15007 396 aa18.85■□□□□ 0.61
COL7A1-210ENST00000487017 KRT23Q9C075 422 aa18.85■□□□□ 0.61
COL7A1-210ENST00000487017 ZSWIM4Q9H7M6 989 aa18.85■□□□□ 0.61
COL7A1-210ENST00000487017 TSPY2A6NKD2 308 aa18.85■□□□□ 0.61
COL7A1-210ENST00000487017 USP26Q9BXU7 913 aa18.85■□□□□ 0.61
COL7A1-210ENST00000487017 BMP15O95972 392 aa18.85■□□□□ 0.61
COL7A1-210ENST00000487017 CUL5Q93034 780 aa18.85■□□□□ 0.61
COL7A1-210ENST00000487017 CDC5LQ99459 802 aaKnown RBP18.85■□□□□ 0.61
COL7A1-210ENST00000487017 IDEP14735 1019 aa18.85■□□□□ 0.61
COL7A1-210ENST00000487017 LMAN1P49257 510 aa18.85■□□□□ 0.61
COL7A1-210ENST00000487017 BCCIPQ9P287 314 aaKnown RBP eCLIP18.85■□□□□ 0.61
COL7A1-210ENST00000487017 ATP10BO94823 1461 aa18.85■□□□□ 0.61
COL7A1-210ENST00000487017 GCOM1H8Y6P7 765 aaPredicted RBP18.85■□□□□ 0.61
COL7A1-210ENST00000487017 MYZAPP0CAP1 466 aa18.85■□□□□ 0.61
COL7A1-210ENST00000487017 HLTFQ14527 1009 aaKnown RBP eCLIP18.85■□□□□ 0.61
COL7A1-210ENST00000487017 XAGE3Q8WTP9 111 aa18.85■□□□□ 0.61
COL7A1-210ENST00000487017 JADE2Q9NQC1 790 aa18.85■□□□□ 0.61
COL7A1-210ENST00000487017 ZHX1Q9UKY1 873 aaPredicted RBP18.84■□□□□ 0.61
COL7A1-210ENST00000487017 GIMAP7Q8NHV1 300 aa18.84■□□□□ 0.61
COL7A1-210ENST00000487017 DNAI1Q9UI46 699 aa18.84■□□□□ 0.61
COL7A1-210ENST00000487017 TUBB4AP04350 444 aa18.84■□□□□ 0.61
COL7A1-210ENST00000487017 TRIM47Q96LD4 638 aa18.84■□□□□ 0.61
COL7A1-210ENST00000487017 CTTNBP2Q8WZ74 1663 aa18.84■□□□□ 0.61
COL7A1-210ENST00000487017 ZFYVE9O95405 1425 aa18.84■□□□□ 0.61
COL7A1-210ENST00000487017 TRERF1Q96PN7 1200 aa18.83■□□□□ 0.61
COL7A1-210ENST00000487017 RTL1A6NKG5 1358 aa18.83■□□□□ 0.61
COL7A1-210ENST00000487017 RNF187Q5TA31 235 aaPredicted RBP18.83■□□□□ 0.61
COL7A1-210ENST00000487017 RRAGBQ5VZM2 374 aa18.83■□□□□ 0.61
COL7A1-210ENST00000487017 CARD14Q9BXL6 1004 aa18.83■□□□□ 0.61
COL7A1-210ENST00000487017 CCDC91Q7Z6B0 441 aa18.83■□□□□ 0.6
COL7A1-210ENST00000487017 TMTC2Q8N394 836 aa18.83■□□□□ 0.6
COL7A1-210ENST00000487017 CNNM2Q9H8M5 875 aa18.83■□□□□ 0.6
COL7A1-210ENST00000487017 PER1O15534 1290 aaPredicted RBP18.83■□□□□ 0.6
COL7A1-210ENST00000487017 TMCO5BA8MYB1 307 aa18.82■□□□□ 0.6
COL7A1-210ENST00000487017 CHMLP26374 656 aa18.82■□□□□ 0.6
COL7A1-210ENST00000487017 COPS6Q7L5N1 327 aa18.82■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms