RNA–Protein interactions for RNA: ENST00000486941.1

SNRNP40-205, Transcript of small nuclear ribonucleoprotein U5 subunit 40, human

TSL 2

Gene SNRNP40, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNRNP40-205	ENST00000486941	ADGRE1	Q14246	886 aa		7.95	□□□□□ -1.14
SNRNP40-205	ENST00000486941	MBTPS1	Q14703	1052 aa		7.95	□□□□□ -1.14
SNRNP40-205	ENST00000486941	ZNF777	Q9ULD5	760 aa	Predicted RBP	7.95	□□□□□ -1.14
SNRNP40-205	ENST00000486941	MICAL2	O94851	1124 aa		7.94	□□□□□ -1.14
SNRNP40-205	ENST00000486941	FAM26D	Q5JW98	314 aa		7.94	□□□□□ -1.14
SNRNP40-205	ENST00000486941	KRT25	Q7Z3Z0	450 aa		7.94	□□□□□ -1.14
SNRNP40-205	ENST00000486941	DMRTC2	Q8IXT2	367 aa	Predicted RBP	7.94	□□□□□ -1.14
SNRNP40-205	ENST00000486941	LPIN3	Q9BQK8	851 aa		7.94	□□□□□ -1.14
SNRNP40-205	ENST00000486941	KRTAP4-8	Q9BYQ9	185 aa		7.94	□□□□□ -1.14
SNRNP40-205	ENST00000486941	SASH3	O75995	380 aa		7.93	□□□□□ -1.14
SNRNP40-205	ENST00000486941	PERM1	Q5SV97	790 aa		7.93	□□□□□ -1.14
SNRNP40-205	ENST00000486941	MYO19	Q96H55	970 aa		7.93	□□□□□ -1.14
SNRNP40-205	ENST00000486941	EFCC1	Q9HA90	598 aa		7.93	□□□□□ -1.14
SNRNP40-205	ENST00000486941	MAP3K6	O95382	1288 aa		7.92	□□□□□ -1.14
SNRNP40-205	ENST00000486941	CPB1	P15086	417 aa		7.92	□□□□□ -1.14
SNRNP40-205	ENST00000486941	ELN	P15502	786 aa		7.92	□□□□□ -1.14
SNRNP40-205	ENST00000486941	MLLT1	Q03111	559 aa	Predicted RBP	7.92	□□□□□ -1.14
SNRNP40-205	ENST00000486941	FAM69C	Q0P6D2	419 aa		7.92	□□□□□ -1.14
SNRNP40-205	ENST00000486941	HIF1A	Q16665	826 aa		7.92	□□□□□ -1.14
SNRNP40-205	ENST00000486941	FKBP5	Q13451	457 aa	Predicted RBP	7.91	□□□□□ -1.14
SNRNP40-205	ENST00000486941	C11orf91	Q3C1V1	193 aa		7.91	□□□□□ -1.14
SNRNP40-205	ENST00000486941	COX20	Q5RI15	118 aa		7.91	□□□□□ -1.14
SNRNP40-205	ENST00000486941	ZMYM1	Q5SVZ6	1142 aa		7.91	□□□□□ -1.14
SNRNP40-205	ENST00000486941	FAM35A	Q86V20	835 aa		7.91	□□□□□ -1.14
SNRNP40-205	ENST00000486941	FMR1NB	Q8N0W7	255 aa	Predicted RBP	7.91	□□□□□ -1.14
SNRNP40-205	ENST00000486941	TRPM4	Q8TD43	1214 aa		7.91	□□□□□ -1.14
SNRNP40-205	ENST00000486941	LENG1	Q96BZ8	264 aa	Predicted RBP	7.91	□□□□□ -1.14
SNRNP40-205	ENST00000486941	SSBP4	Q9BWG4	385 aa	Predicted RBP	7.91	□□□□□ -1.14
SNRNP40-205	ENST00000486941	FOXO3	O43524	673 aa		7.9	□□□□□ -1.14
SNRNP40-205	ENST00000486941	RGS9	O75916	674 aa	Predicted RBP	7.9	□□□□□ -1.14
SNRNP40-205	ENST00000486941	SRPK2	P78362	688 aa	Known RBP	7.9	□□□□□ -1.14
SNRNP40-205	ENST00000486941	PRSS36	Q5K4E3	855 aa		7.9	□□□□□ -1.14
SNRNP40-205	ENST00000486941	CAPN12	Q6ZSI9	719 aa		7.9	□□□□□ -1.14
SNRNP40-205	ENST00000486941	DHX32	Q7L7V1	743 aa	Known RBP	7.9	□□□□□ -1.14
SNRNP40-205	ENST00000486941	PRIMPOL	Q96LW4	560 aa		7.9	□□□□□ -1.14
SNRNP40-205	ENST00000486941	PNMA5	Q96PV4	448 aa		7.9	□□□□□ -1.14
SNRNP40-205	ENST00000486941	SAP130	Q9H0E3	1048 aa		7.9	□□□□□ -1.14
SNRNP40-205	ENST00000486941	ZMIZ1	Q9ULJ6	1067 aa		7.9	□□□□□ -1.14
SNRNP40-205	ENST00000486941	C9orf172	C9J069	976 aa		7.89	□□□□□ -1.15
SNRNP40-205	ENST00000486941	ARSD	P51689	593 aa		7.89	□□□□□ -1.15
SNRNP40-205	ENST00000486941	OCLN	Q16625	522 aa		7.89	□□□□□ -1.15
SNRNP40-205	ENST00000486941	MSL1	Q68DK7	614 aa		7.89	□□□□□ -1.15
SNRNP40-205	ENST00000486941	HFE2	Q6ZVN8	426 aa		7.89	□□□□□ -1.15
SNRNP40-205	ENST00000486941	FAM200A	Q8TCP9	573 aa		7.89	□□□□□ -1.15
SNRNP40-205	ENST00000486941	NACC1	Q96RE7	527 aa		7.89	□□□□□ -1.15
SNRNP40-205	ENST00000486941	RTCB	Q9Y3I0	505 aa	Known RBP	7.89	□□□□□ -1.15
SNRNP40-205	ENST00000486941	KCNMB2	Q9Y691	235 aa		7.89	□□□□□ -1.15
SNRNP40-205	ENST00000486941	DEAF1	O75398	565 aa	Predicted RBP	7.88	□□□□□ -1.15
SNRNP40-205	ENST00000486941	RFX1	P22670	979 aa		7.88	□□□□□ -1.15
SNRNP40-205	ENST00000486941	NRG1	Q02297	640 aa	Predicted RBP	7.88	□□□□□ -1.15
SNRNP40-205	ENST00000486941	TXNRD3	Q86VQ6	643 aa		7.88	□□□□□ -1.15
SNRNP40-205	ENST00000486941	EGFR	P00533	1210 aa		7.87	□□□□□ -1.15
SNRNP40-205	ENST00000486941	GPLD1	P80108	840 aa		7.87	□□□□□ -1.15
SNRNP40-205	ENST00000486941	TREML1	Q86YW5	311 aa		7.87	□□□□□ -1.15
SNRNP40-205	ENST00000486941	ETFBKMT	Q8IXQ9	262 aa		7.87	□□□□□ -1.15
SNRNP40-205	ENST00000486941	FRRS1L	Q9P0K9	344 aa		7.87	□□□□□ -1.15
SNRNP40-205	ENST00000486941	NOVA2	Q9UNW9	492 aa	Known RBP	7.87	□□□□□ -1.15
SNRNP40-205	ENST00000486941		J3QW42	95 aa		7.86	□□□□□ -1.15
SNRNP40-205	ENST00000486941	RARA	P10276	462 aa		7.86	□□□□□ -1.15
SNRNP40-205	ENST00000486941	RAC1	P63000	192 aa		7.86	□□□□□ -1.15
SNRNP40-205	ENST00000486941	FBXO11	Q86XK2	927 aa		7.86	□□□□□ -1.15
SNRNP40-205	ENST00000486941	STK32A	Q8WU08	396 aa		7.86	□□□□□ -1.15
SNRNP40-205	ENST00000486941	C11orf16	Q9NQ32	467 aa		7.86	□□□□□ -1.15
SNRNP40-205	ENST00000486941	EPB42	P16452	691 aa		7.85	□□□□□ -1.15
SNRNP40-205	ENST00000486941	RGL4	Q8IZJ4	473 aa		7.85	□□□□□ -1.15
SNRNP40-205	ENST00000486941	TTC9	Q92623	222 aa		7.85	□□□□□ -1.15
SNRNP40-205	ENST00000486941	SMG9	Q9H0W8	520 aa	Known RBP	7.85	□□□□□ -1.15
SNRNP40-205	ENST00000486941	TLR7	Q9NYK1	1049 aa	Known RBP	7.85	□□□□□ -1.15
SNRNP40-205	ENST00000486941	SLAIN2	Q9P270	581 aa		7.85	□□□□□ -1.15
SNRNP40-205	ENST00000486941	TNFRSF10B	O14763	440 aa		7.84	□□□□□ -1.15
SNRNP40-205	ENST00000486941	PRMT3	O60678	531 aa		7.84	□□□□□ -1.15
SNRNP40-205	ENST00000486941	MMP20	O60882	483 aa		7.84	□□□□□ -1.15
SNRNP40-205	ENST00000486941	XYLB	O75191	536 aa		7.84	□□□□□ -1.15
SNRNP40-205	ENST00000486941	H2AFB1	P0C5Y9	115 aa		7.84	□□□□□ -1.15
SNRNP40-205	ENST00000486941	H2AFB2	P0C5Z0	115 aa		7.84	□□□□□ -1.15
SNRNP40-205	ENST00000486941	NOS3	P29474	1203 aa		7.84	□□□□□ -1.15
SNRNP40-205	ENST00000486941	TRIP4	Q15650	581 aa	Predicted RBP	7.84	□□□□□ -1.15
SNRNP40-205	ENST00000486941	KRTAP9-1	A8MXZ3	250 aa	Predicted RBP	7.83	□□□□□ -1.16
SNRNP40-205	ENST00000486941	ELMSAN1	Q6PJG2	1045 aa		7.83	□□□□□ -1.16
SNRNP40-205	ENST00000486941	CMTR1	Q8N1G2	835 aa	Known RBP	7.83	□□□□□ -1.16
SNRNP40-205	ENST00000486941	WFDC12	Q8WWY7	111 aa		7.83	□□□□□ -1.16
SNRNP40-205	ENST00000486941	IREB2	P48200	963 aa	Known RBP	7.82	□□□□□ -1.16
SNRNP40-205	ENST00000486941	NRL	P54845	237 aa		7.82	□□□□□ -1.16
SNRNP40-205	ENST00000486941	ADAMTSL4	Q6UY14	1074 aa		7.82	□□□□□ -1.16
SNRNP40-205	ENST00000486941	TP53INP1	Q96A56	240 aa		7.82	□□□□□ -1.16
SNRNP40-205	ENST00000486941	KRTAP9-2	Q9BYQ4	174 aa		7.82	□□□□□ -1.16
SNRNP40-205	ENST00000486941	USP21	Q9UK80	565 aa		7.82	□□□□□ -1.16
SNRNP40-205	ENST00000486941	ACIN1	Q9UKV3	1341 aa	Known RBP	7.81	□□□□□ -1.16
SNRNP40-205	ENST00000486941	LOC102724428	A0A0B4J2F2	783 aa		7.81	□□□□□ -1.16
SNRNP40-205	ENST00000486941	DLL1	O00548	723 aa		7.81	□□□□□ -1.16
SNRNP40-205	ENST00000486941	SIK1	P57059	783 aa		7.81	□□□□□ -1.16
SNRNP40-205	ENST00000486941	ARTN	Q5T4W7	220 aa		7.81	□□□□□ -1.16
SNRNP40-205	ENST00000486941	COL13A1	Q5TAT6	717 aa	Predicted RBP	7.81	□□□□□ -1.16
SNRNP40-205	ENST00000486941	VTI1A	Q96AJ9	217 aa		7.81	□□□□□ -1.16
SNRNP40-205	ENST00000486941	MEGF10	Q96KG7	1140 aa		7.81	□□□□□ -1.16
SNRNP40-205	ENST00000486941	TRBV21OR9-2	A0A075B6F4	123 aa	Predicted RBP	7.8	□□□□□ -1.16
SNRNP40-205	ENST00000486941	ZBTB39	O15060	712 aa		7.8	□□□□□ -1.16
SNRNP40-205	ENST00000486941	ELOA	Q14241	798 aa	Known RBP	7.8	□□□□□ -1.16
SNRNP40-205	ENST00000486941	PCSK7	Q16549	785 aa		7.8	□□□□□ -1.16
SNRNP40-205	ENST00000486941	WFDC8	Q8IUA0	241 aa		7.8	□□□□□ -1.16

Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms