RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 CCDC85AQ96PX6 553 aaPredicted RBP18.74■□□□□ 0.59
USP4-212ENST00000486549 TAOK3Q9H2K8 898 aa18.74■□□□□ 0.59
USP4-212ENST00000486549 TIAM2Q8IVF5 1701 aa18.74■□□□□ 0.59
USP4-212ENST00000486549 KIF3CO14782 793 aa18.73■□□□□ 0.59
USP4-212ENST00000486549 PDE8AO60658 829 aa18.73■□□□□ 0.59
USP4-212ENST00000486549 TOMM70O94826 608 aa18.73■□□□□ 0.59
USP4-212ENST00000486549 SF3B3Q15393 1217 aaKnown RBP18.73■□□□□ 0.59
USP4-212ENST00000486549 C16orf71Q8IYS4 520 aaPredicted RBP18.73■□□□□ 0.59
USP4-212ENST00000486549 COL4A1P02462 1669 aa18.73■□□□□ 0.59
USP4-212ENST00000486549 H7C1W4 665 aa18.72■□□□□ 0.59
USP4-212ENST00000486549 PRELPP51888 382 aa18.72■□□□□ 0.59
USP4-212ENST00000486549 RARSP54136 660 aaKnown RBP18.72■□□□□ 0.59
USP4-212ENST00000486549 GRAPQ13588 217 aa18.72■□□□□ 0.59
USP4-212ENST00000486549 GRAPLQ8TC17 118 aaPredicted RBP18.72■□□□□ 0.59
USP4-212ENST00000486549 SRCIN1Q9C0H9 1055 aa18.71■□□□□ 0.59
USP4-212ENST00000486549 TMX4Q9H1E5 349 aaPredicted RBP18.71■□□□□ 0.59
USP4-212ENST00000486549 LTBP3Q9NS15 1303 aa18.71■□□□□ 0.59
USP4-212ENST00000486549 DICER1Q9UPY3 1922 aaKnown RBP18.7■□□□□ 0.58
USP4-212ENST00000486549 CTSWP56202 376 aa18.7■□□□□ 0.58
USP4-212ENST00000486549 CCDC152Q4G0S7 254 aa18.7■□□□□ 0.58
USP4-212ENST00000486549 DPY19L2Q6NUT2 758 aa18.7■□□□□ 0.58
USP4-212ENST00000486549 RTKN2Q8IZC4 609 aa18.7■□□□□ 0.58
USP4-212ENST00000486549 CELF1Q92879 486 aaKnown RBP18.7■□□□□ 0.58
USP4-212ENST00000486549 SEC31BQ9NQW1 1179 aa18.7■□□□□ 0.58
USP4-212ENST00000486549 NOB1Q9ULX3 412 aaKnown RBP18.7■□□□□ 0.58
USP4-212ENST00000486549 SPEF2Q9C093 1822 aa18.7■□□□□ 0.58
USP4-212ENST00000486549 ALDH1L1O75891 902 aa18.69■□□□□ 0.58
USP4-212ENST00000486549 BBOX1O75936 387 aa18.69■□□□□ 0.58
USP4-212ENST00000486549 FKBP4Q02790 459 aaKnown RBP eCLIP18.69■□□□□ 0.58
USP4-212ENST00000486549 CC2D2BQ6DHV5 1058 aa18.69■□□□□ 0.58
USP4-212ENST00000486549 C9orf78Q9NZ63 289 aaPredicted RBP18.69■□□□□ 0.58
USP4-212ENST00000486549 ATP6V0A2Q9Y487 856 aa18.69■□□□□ 0.58
USP4-212ENST00000486549 SNED1Q8TER0 1413 aa18.68■□□□□ 0.58
USP4-212ENST00000486549 GRM8O00222 908 aa18.68■□□□□ 0.58
USP4-212ENST00000486549 HSPA6P17066 643 aa18.68■□□□□ 0.58
USP4-212ENST00000486549 CASP7P55210 303 aa18.68■□□□□ 0.58
USP4-212ENST00000486549 ZNF277Q9NRM2 450 aaPredicted RBP18.68■□□□□ 0.58
USP4-212ENST00000486549 LRRC37AA6NMS7 1700 aa18.68■□□□□ 0.58
USP4-212ENST00000486549 KIF16BQ96L93 1317 aa18.68■□□□□ 0.58
USP4-212ENST00000486549 GLTPD2A6NH11 291 aa18.67■□□□□ 0.58
USP4-212ENST00000486549 GRIPAP1Q4V328 841 aa18.67■□□□□ 0.58
USP4-212ENST00000486549 TTLL11Q8NHH1 800 aa18.67■□□□□ 0.58
USP4-212ENST00000486549 RBM46Q8TBY0 533 aaKnown RBP18.67■□□□□ 0.58
USP4-212ENST00000486549 NMRK2Q9NPI5 230 aa18.67■□□□□ 0.58
USP4-212ENST00000486549 BCAR3O75815 825 aa18.66■□□□□ 0.58
USP4-212ENST00000486549 BRPF1P55201 1214 aaPredicted RBP18.66■□□□□ 0.58
USP4-212ENST00000486549 SP8Q8IXZ3 490 aa18.66■□□□□ 0.58
USP4-212ENST00000486549 API5Q9BZZ5 524 aaKnown RBP18.66■□□□□ 0.58
USP4-212ENST00000486549 GREM2Q9H772 168 aa18.66■□□□□ 0.58
USP4-212ENST00000486549 RPS8P62241 208 aaKnown RBP18.65■□□□□ 0.58
USP4-212ENST00000486549 FSTL1Q12841 308 aa18.65■□□□□ 0.58
USP4-212ENST00000486549 TMC4Q7Z404 712 aa18.65■□□□□ 0.58
USP4-212ENST00000486549 FRAT1Q92837 279 aaPredicted RBP18.65■□□□□ 0.58
USP4-212ENST00000486549 PSMD1Q99460 953 aa18.65■□□□□ 0.58
USP4-212ENST00000486549 PLA2G12BQ9BX93 195 aa18.65■□□□□ 0.58
USP4-212ENST00000486549 VEGFAP15692 232 aaPredicted RBP18.64■□□□□ 0.57
USP4-212ENST00000486549 IARSP41252 1262 aaKnown RBP18.64■□□□□ 0.57
USP4-212ENST00000486549 FAM161AQ3B820 660 aa18.64■□□□□ 0.57
USP4-212ENST00000486549 DPP8Q6V1X1 898 aaPredicted RBP18.64■□□□□ 0.57
USP4-212ENST00000486549 MPNDQ8N594 471 aa18.64■□□□□ 0.57
USP4-212ENST00000486549 CHMP3Q9Y3E7 222 aa18.64■□□□□ 0.57
USP4-212ENST00000486549 NBPF7P0C2Y1 421 aaPredicted RBP18.63■□□□□ 0.57
USP4-212ENST00000486549 APLP1P51693 650 aa18.63■□□□□ 0.57
USP4-212ENST00000486549 ANKRD18AQ8IVF6 992 aa18.63■□□□□ 0.57
USP4-212ENST00000486549 YTHDC1Q96MU7 727 aaKnown RBP18.63■□□□□ 0.57
USP4-212ENST00000486549 CDC5LQ99459 802 aaKnown RBP18.63■□□□□ 0.57
USP4-212ENST00000486549 RRAGCQ9HB90 399 aa18.63■□□□□ 0.57
USP4-212ENST00000486549 EPHA10Q5JZY3 1008 aa18.62■□□□□ 0.57
USP4-212ENST00000486549 SUCLG2Q96I99 432 aa18.62■□□□□ 0.57
USP4-212ENST00000486549 RTL9Q8NET4 1388 aa18.62■□□□□ 0.57
USP4-212ENST00000486549 DUOX1Q9NRD9 1551 aa18.61■□□□□ 0.57
USP4-212ENST00000486549 ITGA6P23229 1130 aa18.61■□□□□ 0.57
USP4-212ENST00000486549 CCT4P50991 539 aaKnown RBP18.61■□□□□ 0.57
USP4-212ENST00000486549 FOXO4P98177 505 aa18.61■□□□□ 0.57
USP4-212ENST00000486549 NSFL1CQ9UNZ2 370 aaKnown RBP18.61■□□□□ 0.57
USP4-212ENST00000486549 TNNQ9UQP3 1299 aa18.61■□□□□ 0.57
USP4-212ENST00000486549 COL4A5P29400 1685 aa18.6■□□□□ 0.57
USP4-212ENST00000486549 IPO8O15397 1037 aaKnown RBP18.6■□□□□ 0.57
USP4-212ENST00000486549 PPIP5K2O43314 1243 aa18.6■□□□□ 0.57
USP4-212ENST00000486549 CSF1RP07333 972 aa18.6■□□□□ 0.57
USP4-212ENST00000486549 GPSM2P81274 684 aa18.6■□□□□ 0.57
USP4-212ENST00000486549 LMBR1LQ6UX01 489 aa18.6■□□□□ 0.57
USP4-212ENST00000486549 LARGE2Q8N3Y3 721 aa18.6■□□□□ 0.57
USP4-212ENST00000486549 SMC1BQ8NDV3 1235 aa18.6■□□□□ 0.57
USP4-212ENST00000486549 SUPT20HQ8NEM7 779 aa18.6■□□□□ 0.57
USP4-212ENST00000486549 ARHGAP45Q92619 1136 aa18.6■□□□□ 0.57
USP4-212ENST00000486549 LTBP1Q14766 1721 aa18.6■□□□□ 0.57
USP4-212ENST00000486549 UTYO14607 1347 aa18.59■□□□□ 0.57
USP4-212ENST00000486549 TRIM27P14373 513 aa18.59■□□□□ 0.57
USP4-212ENST00000486549 IGHMBP2P38935 993 aaKnown RBP18.59■□□□□ 0.57
USP4-212ENST00000486549 AOC3Q16853 763 aa18.59■□□□□ 0.57
USP4-212ENST00000486549 JDP2Q8WYK2 163 aa18.59■□□□□ 0.57
USP4-212ENST00000486549 CLUAP1Q96AJ1 413 aa18.59■□□□□ 0.57
USP4-212ENST00000486549 USP44Q9H0E7 712 aa18.59■□□□□ 0.57
USP4-212ENST00000486549 ANKRD18BA2A2Z9 1011 aa18.58■□□□□ 0.56
USP4-212ENST00000486549 C6orf229H3BNL8 230 aa18.58■□□□□ 0.56
USP4-212ENST00000486549 IFIT5Q13325 482 aaKnown RBP18.58■□□□□ 0.56
USP4-212ENST00000486549 ZKSCAN2Q63HK3 967 aa18.58■□□□□ 0.56
USP4-212ENST00000486549 ATF7IPQ6VMQ6 1270 aa18.58■□□□□ 0.56
USP4-212ENST00000486549 RTFDC1Q9BY42 306 aaPredicted RBP18.58■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 721.2 ms